Tfpt (TCF3 fusion partner) - Rat Genome Database

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Gene: Tfpt (TCF3 fusion partner) Rattus norvegicus
Analyze
Symbol: Tfpt
Name: TCF3 fusion partner
RGD ID: 620839
Description: Enables DNA binding activity and protein kinase binding activity. Involved in apoptotic process; male gonad development; and positive regulation of apoptotic process. Located in cytoplasm and nucleus. Colocalizes with actin filament. Orthologous to human TFPT (TCF3 fusion partner); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2-methoxyethanol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Amida; TCF3 (E2A) fusion partner; TCF3 (E2A) fusion partner (in childhood leukemia); TCF3 fusion partner homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2165,587,855 - 65,597,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,035,758 - 71,045,530 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0179,458,734 - 79,468,506 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0172,785,631 - 72,795,369 (+)NCBIRnor_WKY
Rnor_6.0164,162,525 - 64,172,307 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,155,151 - 63,164,592 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,901,368 - 63,910,301NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,313,363 - 63,322,296 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin filament  (IDA)
cytoplasm  (IDA)
Ino80 complex  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Par-4-mediated recruitment of Amida to the actin cytoskeleton leads to the induction of apoptosis. Boosen M, etal., Exp Cell Res. 2005 Dec 10;311(2):177-91. Epub 2005 Oct 14.
2. Amida predominantly expressed and developmentally regulated in rat testis. Gan Y, etal., Biochem Biophys Res Commun 2001 Oct 26;288(2):407-12.
3. Arrest of cell cycle by amida which is phosphorylated by Cdc2 kinase. Gan Y, etal., Mol Cell Biochem. 2003 Apr;246(1-2):179-85.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Molecular cloning and characterization of Amida, a novel protein which interacts with a neuron-specific immediate early gene product arc, contains novel nuclear localization signals, and causes cell death in cultured cells. Irie Y, etal., J Biol Chem 2000 Jan 28;275(4):2647-53.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:15057822   PMID:17041757   PMID:17617061   PMID:21303910  


Genomics

Comparative Map Data
Tfpt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2165,587,855 - 65,597,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,035,758 - 71,045,530 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0179,458,734 - 79,468,506 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0172,785,631 - 72,795,369 (+)NCBIRnor_WKY
Rnor_6.0164,162,525 - 64,172,307 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,155,151 - 63,164,592 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,901,368 - 63,910,301NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,313,363 - 63,322,296 (+)NCBICelera
Cytogenetic Map1q12NCBI
TFPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,107,020 - 54,115,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1954,107,020 - 54,115,657 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,610,327 - 54,619,037 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,302,142 - 59,310,848 (-)NCBINCBI36Build 36hg18NCBI36
Build 341959,302,141 - 59,310,848NCBI
Celera1951,650,001 - 51,659,116 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,926,190 - 50,935,264 (-)NCBIHuRef
CHM1_11954,612,032 - 54,620,694 (-)NCBICHM1_1
T2T-CHM13v2.01957,185,717 - 57,194,354 (-)NCBIT2T-CHM13v2.0
Tfpt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,623,323 - 3,632,928 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,623,323 - 3,632,928 (-)EnsemblGRCm39 Ensembl
GRCm3873,620,324 - 3,629,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,620,324 - 3,629,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,571,926 - 3,581,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,223,411 - 3,232,971 (-)NCBIMGSCv36mm8
Celera73,532,119 - 3,541,804 (-)NCBICelera
Cytogenetic Map7A1NCBI
Tfpt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604136,427 - 139,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955604136,357 - 139,799 (+)NCBIChiLan1.0ChiLan1.0
TFPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11959,882,348 - 59,891,335 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,879,141 - 59,891,335 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01951,039,142 - 51,048,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TFPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,090,723 - 103,098,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,152,509 - 103,160,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,735,871 - 103,743,780 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,735,933 - 103,743,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,373,897 - 103,381,659 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,135,338 - 103,143,065 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,849,282 - 103,857,192 (+)NCBIUU_Cfam_GSD_1.0
Tfpt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,698,376 - 2,702,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994234,992 - 239,425 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936994234,978 - 239,425 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,011,491 - 56,018,169 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,011,496 - 56,018,166 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,199,501 - 53,206,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TFPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,782,622 - 46,790,461 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,781,471 - 46,790,804 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,871,578 - 26,880,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfpt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,455,422 - 2,459,367 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,455,643 - 2,459,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tfpt
86 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:82
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000018913
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat

Markers in Region
RH130105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,596,777 - 65,597,283 (+)MAPPERmRatBN7.2
Rnor_6.0164,171,678 - 64,172,183NCBIRnor6.0
Rnor_5.0163,163,960 - 63,164,465UniSTSRnor5.0
RGSC_v3.4163,909,707 - 63,910,212UniSTSRGSC3.4
Celera163,321,702 - 63,322,207UniSTS
RH 3.4 Map1741.9UniSTS
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 26 18 18 18 1 74 29 41 11
Low 14 31 23 1 23 8 10 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000089713   ⟹   ENSRNOP00000075123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,587,934 - 65,611,689 (+)Ensembl
Rnor_6.0 Ensembl164,162,672 - 64,172,470 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104939   ⟹   ENSRNOP00000082072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,582,359 - 65,611,689 (+)Ensembl
RefSeq Acc Id: NM_138870   ⟹   NP_620225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,588,439 - 65,597,372 (+)NCBI
Rnor_6.0164,163,339 - 64,172,272 (+)NCBI
Rnor_5.0163,155,151 - 63,164,592 (+)NCBI
RGSC_v3.4163,901,368 - 63,910,301 (+)RGD
Celera163,313,363 - 63,322,296 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228036   ⟹   XP_006228098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
Rnor_6.0164,162,525 - 64,172,307 (+)NCBI
Rnor_5.0163,155,151 - 63,164,592 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006228037   ⟹   XP_006228099
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
Rnor_6.0164,162,525 - 64,172,305 (+)NCBI
Rnor_5.0163,155,151 - 63,164,592 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092939   ⟹   XP_038948867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
RefSeq Acc Id: XM_039092940   ⟹   XP_038948868
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
RefSeq Acc Id: XM_039092941   ⟹   XP_038948869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,960 - 65,597,407 (+)NCBI
RefSeq Acc Id: XM_039092942   ⟹   XP_038948870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,588,555 - 65,597,407 (+)NCBI
RefSeq Acc Id: XR_005493656
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
RefSeq Acc Id: XR_005493658
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2165,587,855 - 65,597,405 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_620225   ⟸   NM_138870
- UniProtKB: Q9JMG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006228098   ⟸   XM_006228036
- Peptide Label: isoform X1
- UniProtKB: Q9JMG6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006228099   ⟸   XM_006228037
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K9T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075123   ⟸   ENSRNOT00000089713
RefSeq Acc Id: XP_038948867   ⟸   XM_039092939
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948868   ⟸   XM_039092940
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948869   ⟸   XM_039092941
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948870   ⟸   XM_039092942
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000082072   ⟸   ENSRNOT00000104939

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMG6-F1-model_v2 AlphaFold Q9JMG6 1-259 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689664
Promoter ID:EPDNEW_R189
Type:multiple initiation site
Name:Tfpt_1
Description:TCF3 fusion partner
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0164,162,849 - 64,162,909EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620839 AgrOrtholog
BioCyc Gene G2FUF-61034 BioCyc
Ensembl Genes ENSRNOG00000056098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000075123 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOP00000082072 ENTREZGENE
  ENSRNOP00000082072.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089713 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000104939 ENTREZGENE
  ENSRNOT00000104939.1 UniProtKB/TrEMBL
InterPro TFPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:85423 UniProtKB/Swiss-Prot
NCBI Gene 85423 ENTREZGENE
PANTHER PTHR35084 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tfpt PhenoGen
UniProt A0A0G2K9T8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV92_RAT UniProtKB/TrEMBL
  Q9JMG6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Tfpt  TCF3 fusion partner  Tfpt  TCF3 (E2A) fusion partner  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Tfpt  TCF3 (E2A) fusion partner    TCF3 (E2A) fusion partner (in childhood leukemia)  Name updated 1299863 APPROVED
2002-08-07 Tfpt  TCF3 (E2A) fusion partner (in childhood leukemia)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization forms a complex with Arc and transports it into the nucleus 634398