Chmp2a (charged multivesicular body protein 2A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Chmp2a (charged multivesicular body protein 2A) Rattus norvegicus
Analyze
Symbol: Chmp2a
Name: charged multivesicular body protein 2A
RGD ID: 1305050
Description: Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromatin modifying protein 2A; LOC365191; RGD1305050; similar to RIKEN cDNA 1500016L11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,731,212 - 82,735,088 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl182,732,231 - 82,738,613 (-)EnsemblGRCr8
mRatBN7.2173,660,045 - 73,662,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,040,454 - 79,042,837 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,604,795 - 87,607,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,795,536 - 80,797,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd182,225,456 - 82,227,970 (-)NCBI
Lyon_Normotensive185,950,946 - 85,953,460 (-)NCBI
Lyon_Hypertensive183,749,458 - 83,751,970 (-)NCBI
F344_StmMcwi180,906,807 - 80,909,321 (-)NCBI
Rnor_6.0165,540,808 - 65,543,708 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0166,352,033 - 66,354,941 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4172,889,349 - 72,891,734 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera160,177,374 - 60,179,759 (+)NCBICelera
RGSC_v3.1172,966,677 - 72,969,771 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14505570   PMID:14557245   PMID:15173323   PMID:17928862   PMID:18687924   PMID:19056867   PMID:19946888   PMID:20458337   PMID:20616062   PMID:22660413   PMID:23045692  
PMID:23051622   PMID:23376485   PMID:23533145   PMID:24107264   PMID:24878737   PMID:26040712   PMID:28242692  


Genomics

Comparative Map Data
Chmp2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,731,212 - 82,735,088 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl182,732,231 - 82,738,613 (-)EnsemblGRCr8
mRatBN7.2173,660,045 - 73,662,894 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,040,454 - 79,042,837 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,604,795 - 87,607,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,795,536 - 80,797,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd182,225,456 - 82,227,970 (-)NCBI
Lyon_Normotensive185,950,946 - 85,953,460 (-)NCBI
Lyon_Hypertensive183,749,458 - 83,751,970 (-)NCBI
F344_StmMcwi180,906,807 - 80,909,321 (-)NCBI
Rnor_6.0165,540,808 - 65,543,708 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0166,352,033 - 66,354,941 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4172,889,349 - 72,891,734 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera160,177,374 - 60,179,759 (+)NCBICelera
RGSC_v3.1172,966,677 - 72,969,771 (+)NCBI
Cytogenetic Map1q21NCBI
CHMP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,551,566 - 58,555,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,551,452 - 58,555,129 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371959,062,933 - 59,066,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,754,745 - 63,758,298 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1956,106,112 - 56,109,665 (-)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,373,170 - 55,376,723 (-)NCBIHuRef
CHM1_11959,056,762 - 59,060,315 (-)NCBICHM1_1
T2T-CHM13v2.01961,649,242 - 61,652,782 (-)NCBIT2T-CHM13v2.0
Chmp2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,765,933 - 12,768,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,761,363 - 12,768,759 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38713,032,006 - 13,034,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,032,010 - 13,034,807 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37713,617,355 - 13,620,126 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36711,932,198 - 11,934,923 (-)NCBIMGSCv36mm8
Celera710,659,197 - 10,661,968 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.73NCBI
Chmp2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,156,828 - 1,160,056 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049555841,156,828 - 1,160,056 (-)NCBIChiLan1.0ChiLan1.0
CHMP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,837,136 - 64,840,736 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,620,025 - 66,623,594 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,564,622 - 55,568,214 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,377,986 - 64,381,641 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,377,986 - 64,381,417 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CHMP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,405,322 - 99,408,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,405,337 - 99,410,163 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha199,803,589 - 99,806,504 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01100,018,434 - 100,021,349 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,019,387 - 100,021,348 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,663,797 - 99,666,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,376,629 - 99,379,542 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,131,268 - 100,134,183 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chmp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1151,025,469 - 1,028,458 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024405118217,983,013 - 217,986,001 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937062133,371 - 136,380 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004937062133,361 - 136,329 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,102,156 - 63,104,943 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1663,102,155 - 63,105,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHMP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1674,821 - 78,356 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660454,133,029 - 4,160,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1650,827,200 - 50,830,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,827,284 - 50,830,702 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Chmp2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483245,293 - 48,314 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Chmp2a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12174,151,624 - 174,154,507 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Chmp2a
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:35
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000030931
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
Ubc-rs2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,663,058 - 73,663,265 (-)MAPPERmRatBN7.2
Rnor_6.0165,540,488 - 65,540,694NCBIRnor6.0
Rnor_5.0166,351,721 - 66,351,927UniSTSRnor5.0
RGSC_v3.4172,888,515 - 72,888,721UniSTSRGSC3.4
Celera160,176,540 - 60,176,746UniSTS
Cytogenetic Map1q21UniSTS
MARC_7283-7284:996687724:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8182,735,865 - 82,736,565 (+)Marker Load Pipeline
mRatBN7.2173,663,680 - 73,664,380 (-)MAPPERmRatBN7.2
Rnor_6.0165,539,373 - 65,540,072NCBIRnor6.0
Rnor_5.0166,350,606 - 66,351,305UniSTSRnor5.0
RGSC_v3.4172,887,400 - 72,888,099UniSTSRGSC3.4
Celera160,175,425 - 60,176,124UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
277 156 729 1591 4066 1011 1727 133 874 494 856 156 5395 2595 448 3979 38 1393 741 908 160 158

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006228117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000030931   ⟹   ENSRNOP00000038229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl182,732,231 - 82,734,041 (-)Ensembl
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)Ensembl
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097443   ⟹   ENSRNOP00000082830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl182,732,231 - 82,734,041 (-)Ensembl
mRatBN7.2 Ensembl173,660,046 - 73,662,452 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108453   ⟹   ENSRNOP00000083234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl182,734,761 - 82,738,613 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163068   ⟹   ENSRNOP00000103297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl182,733,828 - 82,737,754 (-)Ensembl
RefSeq Acc Id: NM_001108906   ⟹   NP_001102376
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,230 - 82,734,618 (-)NCBI
mRatBN7.2173,660,045 - 73,662,433 (-)NCBI
Dahl_SR_JrHsd182,225,456 - 82,227,844 (-)NCBI
Lyon_Normotensive185,950,946 - 85,953,334 (-)NCBI
Lyon_Hypertensive183,749,458 - 83,751,844 (-)NCBI
F344_StmMcwi180,906,807 - 80,909,195 (-)NCBI
Rnor_6.0165,541,322 - 65,543,707 (+)NCBI
Rnor_5.0166,352,033 - 66,354,941 (+)NCBI
RGSC_v3.4172,889,349 - 72,891,734 (+)RGD
Celera160,177,374 - 60,179,759 (+)RGD
Sequence:
RefSeq Acc Id: NM_001416000   ⟹   NP_001402929
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,230 - 82,734,744 (-)NCBI
mRatBN7.2173,660,045 - 73,662,559 (-)NCBI
Dahl_SR_JrHsd182,225,456 - 82,227,970 (-)NCBI
Lyon_Normotensive185,950,946 - 85,953,460 (-)NCBI
Lyon_Hypertensive183,749,458 - 83,751,970 (-)NCBI
F344_StmMcwi180,906,807 - 80,909,321 (-)NCBI
RefSeq Acc Id: XM_006228117   ⟹   XP_006228179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,732,234 - 82,735,088 (-)NCBI
mRatBN7.2173,660,045 - 73,662,894 (-)NCBI
Rnor_6.0165,540,808 - 65,543,708 (+)NCBI
Rnor_5.0166,352,033 - 66,354,941 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063269019   ⟹   XP_063125089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,731,212 - 82,735,088 (-)NCBI
RefSeq Acc Id: XM_063269023   ⟹   XP_063125093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8182,731,212 - 82,735,088 (-)NCBI
RefSeq Acc Id: NP_001102376   ⟸   NM_001108906
- UniProtKB: B2RZB5 (UniProtKB/TrEMBL),   A6KQL1 (UniProtKB/TrEMBL),   A0ACM8QDD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228179   ⟸   XM_006228117
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZY10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038229   ⟸   ENSRNOT00000030931
Ensembl Acc Id: ENSRNOP00000082830   ⟸   ENSRNOT00000097443
RefSeq Acc Id: NP_001402929   ⟸   NM_001416000
- UniProtKB: B2RZB5 (UniProtKB/TrEMBL),   A6KQL1 (UniProtKB/TrEMBL),   A0ACM8QDD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125093   ⟸   XM_063269023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063125089   ⟸   XM_063269019
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000103297   ⟸   ENSRNOT00000163068
Ensembl Acc Id: ENSRNOP00000083234   ⟸   ENSRNOT00000108453
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZB5-F1-model_v2 AlphaFold B2RZB5 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689670
Promoter ID:EPDNEW_R195
Type:initiation region
Name:Chmp2a_1
Description:charged multivesicular body protein 2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0165,541,306 - 65,541,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305050 AgrOrtholog
BioCyc Gene G2FUF-60691 BioCyc
Ensembl Genes ENSRNOG00000043328 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030931 ENTREZGENE
  ENSRNOT00000030931.7 UniProtKB/TrEMBL
  ENSRNOT00000097443 ENTREZGENE
  ENSRNOT00000097443.2 UniProtKB/TrEMBL
  ENSRNOT00000108453.2 UniProtKB/TrEMBL
  ENSRNOT00000163068.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1230 UniProtKB/TrEMBL
  Ubiquitin Conjugating Enzyme UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9088608 IMAGE-MGC_LOAD
InterPro Snf7 UniProtKB/TrEMBL
  Ub_conjugating_enzyme UniProtKB/TrEMBL
  UBC UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report rno:361509 UniProtKB/TrEMBL
  rno:365191 UniProtKB/TrEMBL
MGC_CLONE MGC:189527 IMAGE-MGC_LOAD
NCBI Gene 365191 ENTREZGENE
PANTHER PTHR10476 UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
Pfam Snf7 UniProtKB/TrEMBL
  UQ_con UniProtKB/TrEMBL
PhenoGen Chmp2a PhenoGen
PROSITE UBC_1 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043328 RatGTEx
SMART UBCc UniProtKB/TrEMBL
Superfamily-SCOP UBC-like UniProtKB/TrEMBL
UniProt A0A8I5ZY10 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYZ8_RAT UniProtKB/TrEMBL
  A0ABK0LPE1_RAT UniProtKB/TrEMBL
  A0ACM8QDD6 ENTREZGENE, UniProtKB/TrEMBL
  A6KQL1 ENTREZGENE, UniProtKB/TrEMBL
  B2RZB5 ENTREZGENE
UniProt Secondary B2RZB5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-29 Chmp2a  charged multivesicular body protein 2A  Chmp2a  chromatin modifying protein 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Chmp2a  chromatin modifying protein 2A  RGD1305050_predicted  similar to RIKEN cDNA 1500016L11 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305050_predicted  similar to RIKEN cDNA 1500016L11 (predicted)  LOC365191_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365191_predicted  similar to RIKEN cDNA 1500016L11 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL