CHMP2A (charged multivesicular body protein 2A) - Rat Genome Database
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Gene: CHMP2A (charged multivesicular body protein 2A) Pan paniscus
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Symbol: CHMP2A
Name: charged multivesicular body protein 2A
RGD ID: 11746732
Description: ENCODES a protein that exhibits phosphatidylcholine binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN establishment of protein localization (ortholog); exit from mitosis (ortholog); membrane invagination (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); ESCRT III complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : CHMP2A (charged multivesicular body protein 2A)  HGNC  Alliance
Mus musculus (house mouse) : Chmp2a (charged multivesicular body protein 2A)  MGI  Alliance
Rattus norvegicus (Norway rat) : Chmp2a (charged multivesicular body protein 2A)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Chmp2a (charged multivesicular body protein 2A)
Canis lupus familiaris (dog) : CHMP2A (charged multivesicular body protein 2A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Chmp2a (charged multivesicular body protein 2A)
Sus scrofa (pig) : CHMP2A (charged multivesicular body protein 2A)
Chlorocebus sabaeus (African green monkey) : CHMP2A (charged multivesicular body protein 2A)
Heterocephalus glaber (naked mole-rat) : Chmp2a (charged multivesicular body protein 2A)
more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,377,986 - 64,381,641 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,377,986 - 64,381,417 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,564,622 - 55,568,214 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CHMP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,377,986 - 64,381,641 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,377,986 - 64,381,417 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,564,622 - 55,568,214 (-)NCBIMhudiblu_PPA_v0panPan3
CHMP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1958,551,566 - 58,555,105 (-)EnsemblGRCh38hg38GRCh38
GRCh381958,551,566 - 58,555,624 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371959,062,933 - 59,066,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,754,745 - 63,758,298 (-)NCBINCBI36hg18NCBI36
Celera1956,106,112 - 56,109,665 (-)NCBI
Cytogenetic Map19q13.43NCBI
HuRef1955,373,170 - 55,376,723 (-)NCBIHuRef
CHM1_11959,056,762 - 59,060,320 (-)NCBICHM1_1
Chmp2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,765,933 - 12,768,704 (-)NCBI
GRCm38713,032,006 - 13,034,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,032,010 - 13,034,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,617,355 - 13,620,126 (-)NCBIGRCm37mm9NCBIm37
MGSCv36711,932,198 - 11,934,923 (-)NCBImm8
Celera710,659,197 - 10,661,968 (-)NCBICelera
Cytogenetic Map7A1NCBI
Chmp2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0165,540,808 - 65,543,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,541,322 - 65,543,707 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,352,033 - 66,354,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,889,349 - 72,891,734 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1172,966,677 - 72,969,771 (+)NCBI
Celera160,177,374 - 60,179,759 (+)NCBICelera
Cytogenetic Map1q12NCBI
Chmp2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,156,828 - 1,160,056 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,156,828 - 1,160,056 (-)NCBIChiLan1.0ChiLan1.0
CHMP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl199,405,337 - 99,410,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1199,405,322 - 99,408,257 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Chmp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937062133,361 - 136,329 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,102,156 - 63,104,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,102,155 - 63,105,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHMP2A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl650,827,284 - 50,830,702 (-)Ensembl
ChlSab1.1650,827,200 - 50,830,730 (-)NCBI
Chmp2a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483245,293 - 48,314 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000058250   ⟹   ENSPPAP00000035362
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1964,377,986 - 64,381,417 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000058259   ⟹   ENSPPAP00000035371
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1964,378,069 - 64,380,638 (-)Ensembl
RefSeq Acc Id: XM_003816640   ⟹   XP_003816688
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11964,377,986 - 64,381,641 (-)NCBI
Mhudiblu_PPA_v01955,564,622 - 55,568,214 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003816641   ⟹   XP_003816689
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11964,377,986 - 64,381,432 (-)NCBI
Mhudiblu_PPA_v01955,564,624 - 55,568,177 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003816688 (Get FASTA)   NCBI Sequence Viewer  
  XP_003816689 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003816688   ⟸   XM_003816640
- Sequence:
RefSeq Acc Id: XP_003816689   ⟸   XM_003816641
- Sequence:
RefSeq Acc Id: ENSPPAP00000035371   ⟸   ENSPPAT00000058259
RefSeq Acc Id: ENSPPAP00000035362   ⟸   ENSPPAT00000058250


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040497 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000035362 UniProtKB/TrEMBL
  ENSPPAP00000035371 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000058250 UniProtKB/TrEMBL
  ENSPPAT00000058259 UniProtKB/TrEMBL
InterPro Snf7_fam UniProtKB/TrEMBL
KEGG Report pps:100978139 UniProtKB/TrEMBL
NCBI Gene CHMP2A ENTREZGENE
Pfam Snf7 UniProtKB/TrEMBL
UniProt A0A2R9C0C6_PANPA UniProtKB/TrEMBL
  A0A2R9C0W3_PANPA UniProtKB/TrEMBL