CHMP2A (charged multivesicular body protein 2A)

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Gene: CHMP2A (charged multivesicular body protein 2A) Sus scrofa

Analyze

Symbol:

CHMP2A

Name:

charged multivesicular body protein 2A

RGD ID:

14061157

Description:

ENCODES a protein that exhibits phosphatidylcholine binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN establishment of protein localization (ortholog); exit from mitosis (ortholog); membrane invagination (ortholog); FOUND IN chromatin (ortholog); membrane coat (ortholog); nuclear envelope (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,102,156 - 63,104,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,102,155 - 63,105,032 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Cellular Component

chromatin (ISO)

cytosol (IEA)

ESCRT III complex (IBA)

membrane coat (ISO)

multivesicular body (IBA)

nuclear envelope (ISO)

Molecular Function

phosphatidylcholine binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

CHMP2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,102,156 - 63,104,943 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,102,155 - 63,105,032 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CHMP2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	58,551,566 - 58,555,105 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	58,551,566 - 58,555,624 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	59,062,933 - 59,066,495 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,754,745 - 63,758,298 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	56,106,112 - 56,109,665 (-)	NCBI
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	55,373,170 - 55,376,723 (-)	NCBI		HuRef
CHM1_1	19	59,056,762 - 59,060,320 (-)	NCBI		CHM1_1

Chmp2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,765,933 - 12,768,704 (-)	NCBI	GRCm39		mm39
GRCm38	7	13,032,006 - 13,034,777 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	13,032,010 - 13,034,807 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,617,355 - 13,620,126 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	11,932,198 - 11,934,923 (-)	NCBI			mm8
Celera	7	10,659,197 - 10,661,968 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI

Chmp2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	65,540,808 - 65,543,708 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,541,322 - 65,543,707 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,352,033 - 66,354,941 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,889,349 - 72,891,734 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	72,966,677 - 72,969,771 (+)	NCBI
Celera	1	60,177,374 - 60,179,759 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

Chmp2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955584	1,156,828 - 1,160,056 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955584	1,156,828 - 1,160,056 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHMP2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	64,377,986 - 64,381,641 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	64,377,986 - 64,381,417 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	55,564,622 - 55,568,214 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CHMP2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	99,405,337 - 99,410,163 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	99,405,322 - 99,408,257 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Chmp2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004937062	133,361 - 136,329 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHMP2A
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,827,200 - 50,830,730 (-)	NCBI
ChlSab1.1 Ensembl	6	50,827,284 - 50,830,702 (-)	Ensembl

Chmp2a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	45,293 - 48,314 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021097415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK394084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01023086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000030728 ⟹ ENSSSCP00000027165

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	63,102,156 - 63,104,943 (-)	Ensembl

RefSeq Acc Id:

XM_021097415 ⟹ XP_020953074

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,102,155 - 63,105,032 (-)	NCBI

Sequence:

show sequence

TGACCTGCTGCGGAGACGCGGAAGGTGGTGCGCATGCGCCGGGAGGGGGGGCGGCGGCGGCCGT
TCCCCAGTACGTGCGCACGCGCGCTGTTGTCCCCTCCCAGCATTCCGGGTGCCGGCGGAGCGTG
TGACGTCAAGTGGTTTAATCCGGAAACGGCGGCGACGGCAGAGGCGACAGAACCAAGGGGCTGT
GGTTGGTGGGCGCTCCAGGGAGCCGAGCCAGAGGAGCGTGACCCGGAAGTGGAAGCGAACCCCC
GTCCCAGCTCCGCGAGACTTGCCCCAGGCCCACCGGTGGGCTCCTGCGGCCATGGACCTGTTGT
TTGGGCGCCGGAAGACGCCAGAGGAGCTGCTGCGCCAGAACCAGCGCGCCCTGAATCGTGCGAT
GCGAGAGCTGGACCGTGAGCGACAGAAGCTAGAGACCCAGGAGAAGAAGATCATTGCAGACATC
AAGAAGATGGCCAAGCAGGGCCAGATGGATGCGGTGCGCATCATGGCAAAAGACCTGGTGCGCA
CCCGGCGGTACGTGCGCAAGTTCGTGTTGATGCGGGCCAACATCCAGGCCGTGTCCCTCAAGAT
CCAGACGCTCAAGTCTAACAACTCCATGGCACAAGCCATGAAGGGCGTCACCAAGGCCATGGGC
ACCATGAACAGACAGCTCAAGCTGCCCCAGATCCAGAAGATCATGATGGAGTTTGAGCGGCAGG
CGGAGATCATGGACATGAAGGAGGAGATGATGAACGATGCCATCGACGACGCCATGGGGGACGA
GGAGGACGAGGAGGAGAGCGATGCCGTCGTGGCTCAGGTCCTGGATGAGCTGGGGTTGAGCCTG
ACAGATGAGCTGTCAAACCTCCCCTCCACCGGAGGTTCCCTCAGTGTGGCTGCCAGTGGGAAGA
AGGCCGAGGCCGCAGCCTCGGCCCTAGTTGATGCAGACGCAGATCTGGAGGAGCGGCTCAAGAA
CCTTCGAAGGGACTGATTGCTCCCTGTGCCACCCCAGGGAACCAGCAGATGGCCCAGCATTTTC
ACTGTACCTTCTGTAATAAAAGAGATTGAGCTCTA

hide sequence

RefSeq Acc Id:

XM_021097416 ⟹ XP_020953075

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	63,102,155 - 63,104,901 (-)	NCBI

Sequence:

show sequence

CGTCAAGTGGTTTAATCCGGAAACGGCGGCGACGGCAGAGGCGACAGAACCAAGGGGCTGTGGT
TGGTGGGCGCTCCAGGGAGCCGAGCCAGAGGAGCGTGACCCGGAAGTGGAAGCGAACCCCCGTC
CCAGCTCCGCTCTGCCCCTCGCCCCCTTTCTGGGCCCCACGCCACCTTGCAGCGAGACTTGCCC
CAGGCCCACCGGTGGGCTCCTGCGGCCATGGACCTGTTGTTTGGGCGCCGGAAGACGCCAGAGG
AGCTGCTGCGCCAGAACCAGCGCGCCCTGAATCGTGCGATGCGAGAGCTGGACCGTGAGCGACA
GAAGCTAGAGACCCAGGAGAAGAAGATCATTGCAGACATCAAGAAGATGGCCAAGCAGGGCCAG
ATGGATGCGGTGCGCATCATGGCAAAAGACCTGGTGCGCACCCGGCGGTACGTGCGCAAGTTCG
TGTTGATGCGGGCCAACATCCAGGCCGTGTCCCTCAAGATCCAGACGCTCAAGTCTAACAACTC
CATGGCACAAGCCATGAAGGGCGTCACCAAGGCCATGGGCACCATGAACAGACAGCTCAAGCTG
CCCCAGATCCAGAAGATCATGATGGAGTTTGAGCGGCAGGCGGAGATCATGGACATGAAGGAGG
AGATGATGAACGATGCCATCGACGACGCCATGGGGGACGAGGAGGACGAGGAGGAGAGCGATGC
CGTCGTGGCTCAGGTCCTGGATGAGCTGGGGTTGAGCCTGACAGATGAGCTGTCAAACCTCCCC
TCCACCGGAGGTTCCCTCAGTGTGGCTGCCAGTGGGAAGAAGGCCGAGGCCGCAGCCTCGGCCC
TAGTTGATGCAGACGCAGATCTGGAGGAGCGGCTCAAGAACCTTCGAAGGGACTGATTGCTCCC
TGTGCCACCCCAGGGAACCAGCAGATGGCCCAGCATTTTCACTGTACCTTCTGTAATAAAAGAG
ATTGAGCTCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020953074	(Get FASTA)	NCBI Sequence Viewer
	XP_020953075	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_020953074 ⟸ XM_021097415

- Sequence:

show sequence

MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAK
DLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMME
FERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVAQVLDELGLSLTDELSNLPSTGGSLSVA
ASGKKAEAAASALVDADADLEERLKNLRRD

hide sequence

RefSeq Acc Id:

XP_020953075 ⟸ XM_021097416

- Sequence:

show sequence

MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAK
DLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMME
FERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVAQVLDELGLSLTDELSNLPSTGGSLSVA
ASGKKAEAAASALVDADADLEERLKNLRRD

hide sequence

RefSeq Acc Id:

ENSSSCP00000027165 ⟸ ENSSSCT00000030728

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000029362	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000027165	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000030728	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Snf7_fam	UniProtKB/TrEMBL
NCBI Gene	CHMP2A	ENTREZGENE
Pfam	Snf7	UniProtKB/TrEMBL
UniGene	Ssc.6281	ENTREZGENE
UniProt	I3LSS2_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:86649	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)