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Gene: Tcp10b (t-complex protein 10b) Rattus norvegicus

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Symbol:

Tcp10b

Name:

t-complex protein 10b

RGD ID:

1307454

Description:

Orthologous to several human genes including TCP10L (t-complex 10 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); clothianidin (ortholog); dimethylarsinic acid (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308169; putative t-complex protein 10A homolog 2; T-complex protein 10A homolog 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI		GRCr8
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	52,937,917 - 52,961,307 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	53,647,107 - 53,668,564 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	59,631,954 - 59,653,717 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	53,722,716 - 53,744,177 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	53,531,076 - 53,554,113 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	54,778,769 - 54,801,736 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	47,593,999 - 47,616,165 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	47,595,701 - 47,619,110 (+)	NCBI
Celera	1	48,699,259 - 48,721,149 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

clothianidin (ISO)

dimethylarsinic acid (ISO)

methylarsonic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

urethane (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14586771	PMID:15469726	PMID:17377852

Genomics

Comparative Map Data

Tcp10b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI		GRCr8
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	52,937,917 - 52,961,307 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	53,647,107 - 53,668,564 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	59,631,954 - 59,653,717 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	53,722,716 - 53,744,177 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	53,531,076 - 53,554,113 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	54,778,769 - 54,801,736 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	47,593,999 - 47,616,165 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	47,595,701 - 47,619,110 (+)	NCBI
Celera	1	48,699,259 - 48,721,149 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

TCP10L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	167,170,619 - 167,196,751 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	167,172,145 - 167,196,679 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	167,584,081 - 167,596,396 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	167,504,071 - 167,530,525 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	168,326,422 - 168,338,734 (+)	NCBI		Celera
Cytogenetic Map	6	q27	NCBI
HuRef	6	165,056,706 - 165,069,023 (+)	NCBI		HuRef
CHM1_1	6	167,846,465 - 167,858,780 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	168,553,298 - 168,579,422 (+)	NCBI		T2T-CHM13v2.0

Tcp10a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	7,592,055 - 7,613,259 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	7,592,045 - 7,613,373 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	7,324,656 - 7,345,860 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	7,324,646 - 7,345,974 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	7,529,046 - 7,549,539 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	7,174,355 - 7,194,848 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	17	A1	NCBI
cM Map	17	4.72	NCBI

LOC484082
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	54,994,465 - 55,019,872 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	55,784,902 - 55,809,444 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	55,176,193 - 55,200,735 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	55,073,101 - 55,097,643 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	54,921,550 - 54,946,405 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	55,547,120 - 55,571,353 (+)	NCBI		UU_Cfam_GSD_1.0

TCP10L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	1,982,111 - 1,999,232 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Variants

Variants in Tcp10b
183 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	59
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000018015
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	9856001	54856001	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	10992065	55992065	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	19333571	56983283	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

Markers in Region

BF389618

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	52,961,000 - 52,961,151 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	53,553,807 - 53,553,957	NCBI	Rnor6.0
Rnor_5.0	1	54,801,430 - 54,801,580	UniSTS	Rnor5.0
RGSC_v3.4	1	47,616,333 - 47,616,483	UniSTS	RGSC3.4
Celera	1	48,721,317 - 48,721,467	UniSTS
RH 3.4 Map	1	624.6	UniSTS
Cytogenetic Map	1	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	7	9	63	42	48	18	18	18	6	76	42	50	4	36	30

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001412638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018015 ⟹ ENSRNOP00000018015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	52,937,917 - 52,961,307 (+)	Ensembl
Rnor_6.0 Ensembl	1	53,531,076 - 53,554,113 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077340 ⟹ ENSRNOP00000070785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	52,937,917 - 52,961,307 (+)	Ensembl
Rnor_6.0 Ensembl	1	53,531,947 - 53,553,639 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109422 ⟹ ENSRNOP00000087403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	52,937,917 - 52,961,307 (+)	Ensembl

RefSeq Acc Id:

NM_001412638 ⟹ NP_001399567

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,411 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,880 - 52,961,307 (+)	NCBI

RefSeq Acc Id:

XM_006227927 ⟹ XP_006227989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI
Rnor_5.0	1	54,778,769 - 54,801,736 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGCCAGTGTACATACGGATAGAGGGGATGGATT
CTGAGAAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAG
TACAATGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAA
AAGGTTATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCAC
TTTCTGACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACAC
TTCAGAAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAAT
GCAGTGTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGG
ACACTACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGGTGGAGCGGTTGCT
CAGTGACGGGCGAACTATCATCACCTTCCCCAATGGGACCAGGAAAGAGATCAGTGCTGACAAG
AAGACCACCGTCATCAAGTTTTTTAATGGTGACATGAAGAAGGTCAAGTCCGATCAGAGAGTGG
AACAGCACGACCAGGAATACTTGGGAAGGAAAGACTTTATTTGGCTCACATGTCCCCATCATGA
TATCGAGGGAAATCACCATCATTGCAGGAAGTTGGAGATTTATTATTATGCGGACGCTCAGACG
ACGCACACAACCTACCCAGATGGTGTCGAAGTTGTGCAGTTTCCTAACAAGTGGACTGAAAAAT
TCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCTGATGGGACAGTGAAACAGCTCAAGGATGG
ATGTGAGGAGACTGTGTTCCCCGATGGGACATTTGTGACAGTGAAAAGGAATGGAGACAAAACC
ATCATGTTCAGCAACGGACAGAAAGAAATCCACACAGCCAGGTTCAAGCGGAGGGAATTCCCAG
ATGGCACCACCAAGACGGTGTACTGCAATGGCTGCCAGGAAACCAAGTATGCCTCAGGGAGGAT
CAGAGTCAAAGACGAGACGGGAACTGTCATCCTGGACTGGAAGTAGTACATCTAAAGGACTCAA
TGCCAGGCAGTAGCTTCAACTTCCAAATATAGTTTTGACTAAAATAGACAAAGCAACTCACATT
GATAGGTTCCCTCTGACAATCTTGGAGATCTCCTTATGCATGAGGAGTAAAGAGACATCCAAAA
ATTTGGAAAGAAAGAGACCATGTAGCCACCATCTTGGGAGAAAGGTCAGAGAAACAGTAGCCAG
AAATTAGGCCCGGGACATGGCCTTGTCCAGACCATGCCTTCTGTCAGAGCCTGGCCCTGGAGTA
GGGGGTATAAGGGAAGCAGCAACATCACTGCCAGCTAATTCCTGGGAGCAGCCATTAACAACAA
CTGTCTCCAAGTCTTGCTTGGCCAACGCCTACCTACCTGCATCTACTTCTACCCCCTTTAAGAG
TCCTTATAAGTAGGATCCTGGGGGATGTATCTTCACTGGTGCCTGATGTATCAATAAACATGAT
TAACCATC

hide sequence

RefSeq Acc Id:

XM_006227928 ⟹ XP_006227990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,824 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI
Rnor_5.0	1	54,778,769 - 54,801,736 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGCCAGTGTACATACGGATAGAGGGGATGGATT
CTGAGAAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAG
TACAATGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAA
AAGGTTATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCAC
TTTCTGACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACAC
TTCAGAAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAAT
GCAGTGTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGG
ACACTACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGGTGGAGCGGTTGCT
CAGTGACGGGCGAACTATCATCACCTTCCCCAATGGGACCAGGAAAGAGATCAGTGCTGACAAG
AAGACCACCGTCATCAAGTTTTTTAATGGTGACATGAAGAAGGTCAAGTCCGATCAGAGAGTGA
TTTATTATTATGCGGACGCTCAGACGACGCACACAACCTACCCAGATGGTGTCGAAGTTGTGCA
GTTTCCTAACAAGTGGACTGAAAAATTCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCTGAT
GGGACAGTGAAACAGCTCAAGGATGGATGTGAGGAGACTGTGTTCCCCGATGGGACATTTGTGA
CAGTGAAAAGGAATGGAGACAAAACCATCATGTTCAGCAACGGACAGAAAGAAATCCACACAGC
CAGGTTCAAGCGGAGGGAATTCCCAGATGGCACCACCAAGACGGTGTACTGCAATGGCTGCCAG
GAAACCAAGTATGCCTCAGGGAGGATCAGAGTCAAAGACGAGACGGGAACTGTCATCCTGGACT
GGAAGTAGTACATCTAAAGGACTCAATGCCAGGCAGTAGCTTCAACTTCCAAATATAGTTTTGA
CTAAAATAGACAAAGCAACTCACATTGATAGGTTCCCTCTGACAATCTTGGAGATCTCCTTATG
CATGAGGAGTAAAGAGACATCCAAAAATTTGGAAAGAAAGAGACCATGTAGCCACCATCTTGGG
AGAAAGGTCAGAGAAACAGTAGCCAGAAATTAGGCCCGGGACATGGCCTTGTCCAGACCATGCC
TTCTGTCAGAGCCTGGCCCTGGAGTAGGGGGTATAAGGGAAGCAGCAACATCACTGCCAGCTAA
TTCCTGGGAGCAGCCATTAACAACAACTGTCTCCAAGTCTTGCTTGGCCAACGCCTACCTACCT
GCATCTACTTCTACCCCCTTTAAGAGTCCTTATAAGTAGGATCCTGGGGGATGTATCTTCACTG
GTGCCTGATGTATCAATAAACATGATTAACCATC

hide sequence

RefSeq Acc Id:

XM_008758757 ⟹ XP_008756979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGGTACAGCAGATTTTCTGCATTACGGAGATAG
CAGCATACGAAGGATGCACCCTCCCATGTAGGCACAGTCTCCACTGGGTACCCCGTGAGGGCTT
AACGATTATAAATCACACAGAACTGACACCAGTGTACATACGGATAGAGGGGATGGATTCTGAG
AAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAGTACAA
TGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAAAAGGT
TATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCACTTTCT
GACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACACTTCAG
AAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAATGCAGT
GTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGGACACT
ACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGGTGGAGCGGTTGCTCAGTG
ACGGGCGAACTATCATCACCTTCCCCAATGGGACCAGGAAAGAGATCAGTGCTGACAAGAAGAC
CACCGTCATCAAGTTTTTTAATGGTGACATGAAGAAGGTCAAGTCCGATCAGAGAGTGATTTAT
TATTATGCGGACGCTCAGACGACGCACACAACCTACCCAGATGGTGTCGAAGTTGTGCAGTTTC
CTAACAAGTGGACTGAAAAATTCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCTGATGGGAC
AGTGAAACAGCTCAAGGATGGATGTGAGGAGACTGTGTTCCCCGATGGGACATTTGTGACAGTG
AAAAGGAATGGAGACAAAACCATCATGTTCAGCAACGGACAGAAAGAAATCCACACAGCCAGGT
TCAAGCGGAGGGAATTCCCAGATGGCACCACCAAGACGGTGTACTGCAATGGCTGCCAGGAAAC
CAAGTATGCCTCAGGGAGGATCAGAGTCAAAGACGAGACGGGAACTGTCATCCTGGACTGGAAG
TAGTACATCTAAAGGACTCAATGCCAGGCAGTAGCTTCAACTTCCAAATATAGTTTTGACTAAA
ATAGACAAAGCAACTCACATTGATAGGTTCCCTCTGACAATCTTGGAGATCTCCTTATGCATGA
GGAGTAAAGAGACATCCAAAAATTTGGAAAGAAAGAGACCATGTAGCCACCATCTTGGGAGAAA
GGTCAGAGAAACAGTAGCCAGAAATTAGGCCCGGGACATGGCCTTGTCCAGACCATGCCTTCTG
TCAGAGCCTGGCCCTGGAGTAGGGGGTATAAGGGAAGCAGCAACATCACTGCCAGCTAATTCCT
GGGAGCAGCCATTAACAACAACTGTCTCCAAGTCTTGCTTGGCCAACGCCTACCTACCTGCATC
TACTTCTACCCCCTTTAAGAGTCCTTATAAGTAGGATCCTGGGGGATGTATCTTCACTGGTGCC
TGATGTATCAATAAACATGATTAACCATC

hide sequence

RefSeq Acc Id:

XM_008758758 ⟹ XP_008756980

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGGTACAGCAGATTTTCTGCATTACGGAGATAG
CAGCATACGAAGGATGCACCCTCCCATGTAGGCACAGTCTCCACTGGGTACCCCGTGAGGGCTT
AACGATTATAAATCACACAGAACTGACACCAGTGTACATACGGATAGAGGGGATGGATTCTGAG
AAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAGTACAA
TGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAAAAGGT
TATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCACTTTCT
GACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACACTTCAG
AAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAATGCAGT
GTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGGACACT
ACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGATTTATTATTATGCGGACG
CTCAGACGACGCACACAACCTACCCAGATGGTGTCGAAGTTGTGCAGTTTCCTAACAAGTGGAC
TGAAAAATTCTACCCGGATGGCTCCAAGGAAACCGTGTTTCCTGATGGGACAGTGAAACAGCTC
AAGGATGGATGTGAGGAGACTGTGTTCCCCGATGGGACATTTGTGACAGTGAAAAGGAATGGAG
ACAAAACCATCATGTTCAGCAACGGACAGAAAGAAATCCACACAGCCAGGTTCAAGCGGAGGGA
ATTCCCAGATGGCACCACCAAGACGGTGTACTGCAATGGCTGCCAGGAAACCAAGTATGCCTCA
GGGAGGATCAGAGTCAAAGACGAGACGGGAACTGTCATCCTGGACTGGAAGTAGTACATCTAAA
GGACTCAATGCCAGGCAGTAGCTTCAACTTCCAAATATAGTTTTGACTAAAATAGACAAAGCAA
CTCACATTGATAGGTTCCCTCTGACAATCTTGGAGATCTCCTTATGCATGAGGAGTAAAGAGAC
ATCCAAAAATTTGGAAAGAAAGAGACCATGTAGCCACCATCTTGGGAGAAAGGTCAGAGAAACA
GTAGCCAGAAATTAGGCCCGGGACATGGCCTTGTCCAGACCATGCCTTCTGTCAGAGCCTGGCC
CTGGAGTAGGGGGTATAAGGGAAGCAGCAACATCACTGCCAGCTAATTCCTGGGAGCAGCCATT
AACAACAACTGTCTCCAAGTCTTGCTTGGCCAACGCCTACCTACCTGCATCTACTTCTACCCCC
TTTAAGAGTCCTTATAAGTAGGATCCTGGGGGATGTATCTTCACTGGTGCCTGATGTATCAATA
AACATGATTAACCATC

hide sequence

RefSeq Acc Id:

XM_008758759 ⟹ XP_008756981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGGTACAGCAGATTTTCTGCATTACGGAGATAG
CAGCATACGAAGGATGCACCCTCCCATGTAGGCACAGTCTCCACTGGGTACCCCGTGAGGGCTT
AACGATTATAAATCACACAGAACTGACACCAGTGTACATACGGATAGAGGGGATGGATTCTGAG
AAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAGTACAA
TGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAAAAGGT
TATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCACTTTCT
GACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACACTTCAG
AAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAATGCAGT
GTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGGACACT
ACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGGTGGAGCGGTTGCTCAGTG
ACGGGCGAACTATCATCACCTTCCCCAATGGGACCAGGAAAGAGATCAGTGCTGACAAGAAGAC
CACCGTCATCAAGTTTTTTAATGGTGACATGAAGAAGGTCAAGTCCGATCAGAGAGTGGAACAG
CACGACCAGGAATACTTGGGAAGGAAAGACTTTATTTGGCTCACATGTCCCCATCATGATATCG
AGGGAAATCACCATCATTGCAGGAAGTTGGAGATTTATTATTATGCGGACGCTCAGACGACGCA
CACAACCTACCCAGATGGTGTCGAAGTTGTGCAGTTTCCTAACAAGTGGACTGAAAAATTCTAC
CCGGATGGCTCCAAGGAAACCGTGTTTCCTGATGGGACAGTGAAACAGCTCAAGGATGGATGTG
AGGAGACTGTGTTCCCCGATGGGACATTTGTGACAGTGAAAAGGAATGGAGACAAAACCATCAT
GTTCAGCAACGGACAGAAAGAAATCCACACAGCCAGGTTCAAGCGGAGGGAATTCCCAGATGGC
ACCACCAAGACGGTGTACTGCAATGGCTGCCAGGAAACCAAGTATGCCTCAGGGAGGATCAGAG
TCAAAGACGAGACGGGAACTGTCATCCTGGACTGGAAGTAGTACATCTAAAGGACTCAATGCCA
GGCAGTAGCTTCAACTTCCAAATATAGTTTTGACTAAAATAGACAAAGCAACTCACATTGATAG
GTTCCCTCTGACAATCTTGGAGATCTCCTTATGCATGAGGAGTAAAGAGACATCCAAAAATTTG
GAAAGAAAGAGACCATGTAGCCACCATCTTGGGAGAAAGGTCAGAGAAACAGTAGCCAGAAATT
AGGCCCGGGACATGGCCTTGTCCAGACCATGCCTTCTGTCAGAGCCTGGCCCTGGAGTAGGGGG
TATAAGGGAAGCAGCAACATCACTGCCAGCTAATTCCTGGGAGCAGCCATTAACAACAACTGTC
TCCAAGTCTTGCTTGGCCAACGCCTACCTACCTGCATCTACTTCTACCCCCTTTAAGAGTCCTT
ATAAGTAGGATCCTGGGGGATGTATCTTCACTGGTGCCTGATGTATCAATAAACATGATTAACC
ATC

hide sequence

RefSeq Acc Id:

XM_017589093 ⟹ XP_017444582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI
mRatBN7.2	1	52,937,823 - 52,961,307 (+)	NCBI
Rnor_6.0	1	53,530,992 - 53,554,113 (+)	NCBI

Sequence:

show sequence

AATGGACAGGTTTCCTGAAGTTCTTAAGCTAGCTGTGTAGAGGGCGCAGAGAGCTGTTGGGATA
TGGCCTAGATGAGGAATATCCTGGTAGAAGTCACCATCTTAGGCTAGGCTATGGAGTTGTAAGT
TGGGGACCAGGGGTTTGTCCTGATGAGAGGCAGTCAAAGCTTCCACAGCAAGGGTCTGACGAAG
GACTAAGACCTCCCAGGTGCCCTCTCAAGGCCCTGCTCGCCTCAAGAATGCTTACTGGTCACCT
CGAGGCTAAGGAGTCAGCTGAAACAAATCATGTTAGAGGACCAGAGTCAGGGAGGAGGAGGGCC
CAACAATGAGAAGAAGAAGATGGAGGCCAAAGCCCAGGCCCCTGGGGAGGACAGCAAGACTGAT
GAGGTTGTGGGGCTGCAGAAGCAGATCTCTGACCTTGGGACAGAACTCACAAGACAGTCATCAT
GGTGGTGCGTAGCTCACAAAGACCTCCAGAGTCAGATCGATGCTCTGATAAAGGAGAACCAGGA
GATCCGTGCAGAGTTGCAGACCTTGAAGAAGCAGGACTCGGAGGCCCCAAAAGCCCCTACAGCC
TCACCATCCCCGCCAACAGCGACCAACACTCTGGTACAGCAGATTTTCTGCATTACGGAGATAG
CAGCATACGAAGGATGCACCCTCCCATGTAGGCACAGTCTCCACTGGGTACCCCGTGAGGGCTT
AACGATTATAAATCACACAGAACTGACACCAGTGTACATACGGATAGAGGGGATGGATTCTGAG
AAAACAACATCATGGGATGAAAGAGATGACGCGCCTTCTGGAAGTCCTCAAAACGGGAGTACAA
TGGCCACCGGAGGAACAGACTCTCTGGAGGAAAGACTGTCTTTTACATCTTTAGATGAAAAGGT
TATACACATGTCTTCCAAATTTCTGCAAAGAGGCTTTGGCAGACTGTCACCAGAACCACTTTCT
GACAGCACATTCCTGGACACAGAGTCACCGGCTGATATCTGGTCTTCCAATCCAGACACTTCAG
AAGGTGAGATTCTCCTGCAGGCCCGAGCAAGCAGGGTCCTCCCTTGTTTTCCCCCGAATGCAGT
GTGGCTGCAGAATATTCCAGCAAAGTCAAGAGTTCCTAAAGAAGTACAGCAAACCTCGGACACT
ACAAAGGAAGATGAGACACAGGAAAAGCGACACTCAAACGGCAAGGTGGAGCGGTTGCTCAGTG
ACGGGCGAACTATCATCACCTTCCCCAATGGGACCAGGAAAGAGATCAGTGCTGACAAGAAGAC
CACCGTCATCAAGTTTTTTAATGGTGACATGAAGAAGGTCAAGTCCGATCAGAGAGTGCACGAC
CAGGAATACTTGGGAAGGAAAGACTTTATTTGGCTCACATGTCCCCATCATGATATCGAGGGAA
ATCACCATCATTGCAGGAAGTTGGAGATTTATTATTATGCGGACGCTCAGACGACGCACACAAC
CTACCCAGATGGTGTCGAAGTTGTGCAGTTTCCTAACAAGTGGACTGAAAAATTCTACCCGGAT
GGCTCCAAGGAAACCGTGTTTCCTGATGGGACAGTGAAACAGCTCAAGGATGGATGTGAGGAGA
CTGTGTTCCCCGATGGGACATTTGTGACAGTGAAAAGGAATGGAGACAAAACCATCATGTTCAG
CAACGGACAGAAAGAAATCCACACAGCCAGGTTCAAGCGGAGGGAATTCCCAGATGGCACCACC
AAGACGGTGTACTGCAATGGCTGCCAGGAAACCAAGTATGCCTCAGGGAGGATCAGAGTCAAAG
ACGAGACGGGAACTGTCATCCTGGACTGGAAGTAGTACATCTAAAGGACTCAATGCCAGGCAGT
AGCTTCAACTTCCAAATATAGTTTTGACTAAAATAGACAAAGCAACTCACATTGATAGGTTCCC
TCTGACAATCTTGGAGATCTCCTTATGCATGAGGAGTAAAGAGACATCCAAAAATTTGGAAAGA
AAGAGACCATGTAGCCACCATCTTGGGAGAAAGGTCAGAGAAACAGTAGCCAGAAATTAGGCCC
GGGACATGGCCTTGTCCAGACCATGCCTTCTGTCAGAGCCTGGCCCTGGAGTAGGGGGTATAAG
GGAAGCAGCAACATCACTGCCAGCTAATTCCTGGGAGCAGCCATTAACAACAACTGTCTCCAAG
TCTTGCTTGGCCAACGCCTACCTACCTGCATCTACTTCTACCCCCTTTAAGAGTCCTTATAAGT
AGGATCCTGGGGGATGTATCTTCACTGGTGCCTGATGTATCAATAAACATGATTAACCATC

hide sequence

RefSeq Acc Id:

XM_063288520 ⟹ XP_063144590

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI

RefSeq Acc Id:

XM_063288521 ⟹ XP_063144591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	55,485,354 - 55,508,836 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001399567	(Get FASTA)	NCBI Sequence Viewer
	XP_006227989	(Get FASTA)	NCBI Sequence Viewer
	XP_006227990	(Get FASTA)	NCBI Sequence Viewer
	XP_008756979	(Get FASTA)	NCBI Sequence Viewer
	XP_008756980	(Get FASTA)	NCBI Sequence Viewer
	XP_008756981	(Get FASTA)	NCBI Sequence Viewer
	XP_017444582	(Get FASTA)	NCBI Sequence Viewer
	XP_063144590	(Get FASTA)	NCBI Sequence Viewer
	XP_063144591	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66440	(Get FASTA)	NCBI Sequence Viewer
	EDL83135	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018015.6
	ENSRNOP00000070785.1
	ENSRNOP00000087403.1

RefSeq Acc Id:	XP_006227989 ⟸ XM_006227927
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLPVYIRIEGMDSEKTTSWDER DDAPSGSPQNGSTMATGGTDSLEERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTE SPADIWSSNPDTSEGEILLQARASRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQE KRHSNGKVERLLSDGRTIITFPNGTRKEISADKKTTVIKFFNGDMKKVKSDQRVEQHDQEYLGR KDFIWLTCPHHDIEGNHHHCRKLEIYYYADAQTTHTTYPDGVEVVQFPNKWTEKFYPDGSKETV FPDGTVKQLKDGCEETVFPDGTFVTVKRNGDKTIMFSNGQKEIHTARFKRREFPDGTTKTVYCN GCQETKYASGRIRVKDETGTVILDWK hide sequence

RefSeq Acc Id:	XP_006227990 ⟸ XM_006227928
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6A4A8 (UniProtKB/TrEMBL), A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLPVYIRIEGMDSEKTTSWDER DDAPSGSPQNGSTMATGGTDSLEERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTE SPADIWSSNPDTSEGEILLQARASRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQE KRHSNGKVERLLSDGRTIITFPNGTRKEISADKKTTVIKFFNGDMKKVKSDQRVIYYYADAQTT HTTYPDGVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTFVTVKRNGDKTI MFSNGQKEIHTARFKRREFPDGTTKTVYCNGCQETKYASGRIRVKDETGTVILDWK hide sequence

RefSeq Acc Id:	XP_008756981 ⟸ XM_008758759
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLVQQIFCITEIAAYEGCTLPC RHSLHWVPREGLTIINHTELTPVYIRIEGMDSEKTTSWDERDDAPSGSPQNGSTMATGGTDSLE ERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTESPADIWSSNPDTSEGEILLQARA SRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQEKRHSNGKVERLLSDGRTIITFPN GTRKEISADKKTTVIKFFNGDMKKVKSDQRVEQHDQEYLGRKDFIWLTCPHHDIEGNHHHCRKL EIYYYADAQTTHTTYPDGVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTF VTVKRNGDKTIMFSNGQKEIHTARFKRREFPDGTTKTVYCNGCQETKYASGRIRVKDETGTVIL DWK hide sequence

RefSeq Acc Id:	XP_008756979 ⟸ XM_008758757
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLVQQIFCITEIAAYEGCTLPC RHSLHWVPREGLTIINHTELTPVYIRIEGMDSEKTTSWDERDDAPSGSPQNGSTMATGGTDSLE ERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTESPADIWSSNPDTSEGEILLQARA SRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQEKRHSNGKVERLLSDGRTIITFPN GTRKEISADKKTTVIKFFNGDMKKVKSDQRVIYYYADAQTTHTTYPDGVEVVQFPNKWTEKFYP DGSKETVFPDGTVKQLKDGCEETVFPDGTFVTVKRNGDKTIMFSNGQKEIHTARFKRREFPDGT TKTVYCNGCQETKYASGRIRVKDETGTVILDWK hide sequence

RefSeq Acc Id:	XP_008756980 ⟸ XM_008758758
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLVQQIFCITEIAAYEGCTLPC RHSLHWVPREGLTIINHTELTPVYIRIEGMDSEKTTSWDERDDAPSGSPQNGSTMATGGTDSLE ERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTESPADIWSSNPDTSEGEILLQARA SRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQEKRHSNGKIYYYADAQTTHTTYPD GVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTFVTVKRNGDKTIMFSNGQ KEIHTARFKRREFPDGTTKTVYCNGCQETKYASGRIRVKDETGTVILDWK hide sequence

RefSeq Acc Id:	XP_017444582 ⟸ XM_017589093
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEDQSQGGGGPNNEKKKMEAKAQAPGEDSKTDEVVGLQKQISDLGTELTRQSSWWCVAHKDLQ SQIDALIKENQEIRAELQTLKKQDSEAPKAPTASPSPPTATNTLVQQIFCITEIAAYEGCTLPC RHSLHWVPREGLTIINHTELTPVYIRIEGMDSEKTTSWDERDDAPSGSPQNGSTMATGGTDSLE ERLSFTSLDEKVIHMSSKFLQRGFGRLSPEPLSDSTFLDTESPADIWSSNPDTSEGEILLQARA SRVLPCFPPNAVWLQNIPAKSRVPKEVQQTSDTTKEDETQEKRHSNGKVERLLSDGRTIITFPN GTRKEISADKKTTVIKFFNGDMKKVKSDQRVHDQEYLGRKDFIWLTCPHHDIEGNHHHCRKLEI YYYADAQTTHTTYPDGVEVVQFPNKWTEKFYPDGSKETVFPDGTVKQLKDGCEETVFPDGTFVT VKRNGDKTIMFSNGQKEIHTARFKRREFPDGTTKTVYCNGCQETKYASGRIRVKDETGTVILDW K hide sequence

Ensembl Acc Id:

ENSRNOP00000018015 ⟸ ENSRNOT00000018015

Ensembl Acc Id:

ENSRNOP00000070785 ⟸ ENSRNOT00000077340

Ensembl Acc Id:

ENSRNOP00000087403 ⟸ ENSRNOT00000109422

RefSeq Acc Id:	NP_001399567 ⟸ NM_001412638
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL), B2GUX1 (UniProtKB/TrEMBL), D3ZUW1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144590 ⟸ XM_063288520
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JYT7 (UniProtKB/TrEMBL), A6KK47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144591 ⟸ XM_063288521
- Peptide Label:	isoform X8

Protein Domains

Centromere protein J C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JYT7-F1-model_v2	AlphaFold	A0A0G2JYT7	1-461	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689641

Promoter ID:

EPDNEW_R159

Type:

initiation region

Name:

Tcp10b_1

Description:

t-complex protein 10b

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	53,531,017 - 53,531,077	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307454	AgrOrtholog
BioCyc Gene	G2FUF-61500	BioCyc
Ensembl Genes	ENSRNOG00000013374	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018015.8	UniProtKB/TrEMBL
	ENSRNOT00000077340.2	UniProtKB/TrEMBL
	ENSRNOT00000109422.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.450.20	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7455355	IMAGE-MGC_LOAD
InterPro	Tcp10/CenJ_C	UniProtKB/TrEMBL
	Tcp10_C_sf	UniProtKB/TrEMBL
	TCP10_fam	UniProtKB/TrEMBL
MGC_CLONE	MGC:187531	IMAGE-MGC_LOAD
NCBI Gene	308169	ENTREZGENE
PANTHER	PTHR10331	UniProtKB/TrEMBL
	T-COMPLEX PROTEIN 10A-RELATED	UniProtKB/TrEMBL
Pfam	Tcp10_C	UniProtKB/TrEMBL
PhenoGen	Tcp10b	PhenoGen
RatGTEx	ENSRNOG00000013374	RatGTEx
UniProt	A0A0G2JYT7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4A8	ENTREZGENE, UniProtKB/TrEMBL
	A6KK47	ENTREZGENE, UniProtKB/TrEMBL
	B2GUX1	ENTREZGENE
	D3ZUW1	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B2GUX1	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tcp10b	t-complex protein 10b	Tcp10b_predicted	t-complex protein 10b (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tcp10b_predicted	t-complex protein 10b (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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