Wdr27 (WD repeat domain 27) - Rat Genome Database

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Gene: Wdr27 (WD repeat domain 27) Rattus norvegicus
Analyze
Symbol: Wdr27
Name: WD repeat domain 27
RGD ID: 1309633
Description: Predicted to be located in nucleoplasm. Orthologous to human WDR27 (WD repeat domain 27); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102547091; LOC308222; RGD1309633; similar to RIKEN cDNA 0610012K18; uncharacterized LOC102547091; WD repeat-containing protein 27
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,505,375 - 64,623,573 (-)NCBIGRCr8
mRatBN7.2155,832,240 - 55,950,457 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,832,248 - 55,969,038 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,806,051 - 56,949,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,808,450 - 56,942,556 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,072,847 - 58,132,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,786,186 - 53,872,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,755,651 - 53,875,323 (-)NCBI
Celera152,046,593 - 52,162,304 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Wdr27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,505,375 - 64,623,573 (-)NCBIGRCr8
mRatBN7.2155,832,240 - 55,950,457 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,832,248 - 55,969,038 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,806,051 - 56,949,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,808,450 - 56,942,556 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,072,847 - 58,132,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,786,186 - 53,872,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,755,651 - 53,875,323 (-)NCBI
Celera152,046,593 - 52,162,304 (-)NCBICelera
Cytogenetic Map1q12NCBI
WDR27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,426,420 - 169,702,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,457,212 - 169,702,067 (-)EnsemblGRCh38hg38GRCh38
GRCh376169,857,307 - 170,102,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,599,232 - 169,844,084 (-)NCBINCBI36Build 36hg18NCBI36
Celera6170,567,481 - 170,812,344 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,278,708 - 167,521,934 (-)NCBIHuRef
CHM1_16170,119,555 - 170,364,373 (-)NCBICHM1_1
T2T-CHM13v2.06170,780,064 - 171,055,943 (-)NCBIT2T-CHM13v2.0
Wdr27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,005,092 - 15,163,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,038,781 - 15,163,420 (-)EnsemblGRCm39 Ensembl
GRCm381714,784,829 - 14,943,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,818,519 - 14,943,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371714,955,679 - 15,080,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,555,250 - 14,679,700 (-)NCBIMGSCv36mm8
Celera1715,613,111 - 15,743,823 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Wdr27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,934,842 - 4,125,395 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,928,775 - 4,123,191 (+)NCBIChiLan1.0ChiLan1.0
WDR27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25189,715,422 - 189,952,751 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,599,066 - 187,836,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,533,231 - 167,774,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,372,009 - 172,606,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,372,379 - 172,594,078 (-)Ensemblpanpan1.1panPan2
WDR27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,573,432 - 56,787,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,565,696 - 56,788,150 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,362,791 - 57,583,191 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,755,050 - 56,969,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,755,069 - 56,969,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,649,807 - 56,864,141 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,497,428 - 56,712,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,125,038 - 57,341,209 (-)NCBIUU_Cfam_GSD_1.0
Wdr27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,751,167 - 150,902,951 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648917,968,684 - 18,154,912 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,023,695 - 18,154,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1578,480 - 653,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11578,491 - 720,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21955,861 - 1,224,451 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,241,421 - 97,500,147 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604069,235,900 - 69,505,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248505,443,035 - 5,632,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr27
878 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000021141
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat

Markers in Region
D1Rat256  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8164,622,856 - 64,623,081 (+)Marker Load Pipeline
mRatBN7.2155,949,736 - 55,949,961 (+)MAPPERmRatBN7.2
Rnor_6.0156,949,000 - 56,949,224NCBIRnor6.0
Rnor_5.0158,132,346 - 58,132,570UniSTSRnor5.0
RGSC_v3.4153,871,755 - 53,872,145RGDRGSC3.4
RGSC_v3.4153,871,782 - 53,872,006UniSTSRGSC3.4
RGSC_v3.1153,874,727 - 53,874,951RGD
Celera152,161,621 - 52,161,847UniSTS
RH 3.4 Map1658.1UniSTS
RH 3.4 Map1658.1RGD
RH 2.0 Map1385.1RGD
SHRSP x BN Map128.3399RGD
Cytogenetic Map1q12UniSTS
RH132671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,951,797 - 55,952,002 (+)MAPPERmRatBN7.2
Rnor_6.0156,951,061 - 56,951,265NCBIRnor6.0
Rnor_5.0158,134,407 - 58,134,611UniSTSRnor5.0
RGSC_v3.4153,873,843 - 53,874,047UniSTSRGSC3.4
Celera152,163,684 - 52,163,888UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020889   ⟹   ENSRNOP00000020889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl155,832,248 - 55,969,038 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000021141   ⟹   ENSRNOP00000021141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl155,832,268 - 55,950,435 (-)Ensembl
Rnor_6.0 Ensembl156,808,450 - 56,942,556 (-)Ensembl
RefSeq Acc Id: XM_008758807   ⟹   XP_008757029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,563 (-)NCBI
mRatBN7.2155,832,248 - 55,950,446 (-)NCBI
Rnor_6.0156,806,051 - 56,949,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758811   ⟹   XP_008757033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,075 (-)NCBI
mRatBN7.2155,832,240 - 55,949,957 (-)NCBI
Rnor_6.0156,806,051 - 56,949,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758812   ⟹   XP_008757034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
mRatBN7.2155,832,248 - 55,950,457 (-)NCBI
Rnor_6.0156,806,051 - 56,949,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758813   ⟹   XP_008757035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,419 (-)NCBI
mRatBN7.2155,832,240 - 55,950,323 (-)NCBI
Rnor_6.0156,806,051 - 56,949,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589899   ⟹   XP_017445388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,617,097 (-)NCBI
mRatBN7.2155,832,240 - 55,947,465 (-)NCBI
Rnor_6.0156,806,051 - 56,949,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100016   ⟹   XP_038955944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,617,097 (-)NCBI
mRatBN7.2155,832,240 - 55,949,008 (-)NCBI
RefSeq Acc Id: XM_039100027   ⟹   XP_038955955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,458 (-)NCBI
mRatBN7.2155,832,240 - 55,949,959 (-)NCBI
RefSeq Acc Id: XM_039100031   ⟹   XP_038955959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,617,097 (-)NCBI
mRatBN7.2155,832,240 - 55,947,465 (-)NCBI
RefSeq Acc Id: XM_039100059   ⟹   XP_038955987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,616,169 (-)NCBI
mRatBN7.2155,832,240 - 55,943,049 (-)NCBI
RefSeq Acc Id: XM_039100071   ⟹   XP_038955999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,617,097 (-)NCBI
mRatBN7.2155,832,240 - 55,947,465 (-)NCBI
RefSeq Acc Id: XM_039100076   ⟹   XP_038956004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
mRatBN7.2155,832,248 - 55,950,457 (-)NCBI
RefSeq Acc Id: XM_063280892   ⟹   XP_063136962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,572 (-)NCBI
RefSeq Acc Id: XM_063280893   ⟹   XP_063136963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,563 (-)NCBI
RefSeq Acc Id: XM_063280894   ⟹   XP_063136964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,563 (-)NCBI
RefSeq Acc Id: XM_063280895   ⟹   XP_063136965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,572 (-)NCBI
RefSeq Acc Id: XM_063280896   ⟹   XP_063136966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
RefSeq Acc Id: XM_063280897   ⟹   XP_063136967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,563 (-)NCBI
RefSeq Acc Id: XM_063280898   ⟹   XP_063136968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
RefSeq Acc Id: XM_063280899   ⟹   XP_063136969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
RefSeq Acc Id: XM_063280900   ⟹   XP_063136970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
RefSeq Acc Id: XM_063280901   ⟹   XP_063136971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,505,375 - 64,623,573 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001419112 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419113 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419114 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419115 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419116 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419117 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419118 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419119 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419120 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419121 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419122 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419123 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419124 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419125 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419126 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757029 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757033 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757034 (Get FASTA)   NCBI Sequence Viewer  
  XP_008757035 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445388 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956004 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136962 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136964 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136965 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136966 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136967 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136968 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136969 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136971 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99841 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020889.5
  ENSRNOP00000021141.7
RefSeq Acc Id: XP_008757034   ⟸   XM_008758812
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008757029   ⟸   XM_008758807
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008757035   ⟸   XM_008758813
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008757033   ⟸   XM_008758811
- Peptide Label: isoform X6
- UniProtKB: A0A8L2QBP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445388   ⟸   XM_017589899
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000021141   ⟸   ENSRNOT00000021141
RefSeq Acc Id: XP_038955955   ⟸   XM_039100027
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955944   ⟸   XM_039100016
- Peptide Label: isoform X1
- UniProtKB: F1M8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955999   ⟸   XM_039100071
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038955959   ⟸   XM_039100031
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955987   ⟸   XM_039100059
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038956004   ⟸   XM_039100076
- Peptide Label: isoform X14
Ensembl Acc Id: ENSRNOP00000020889   ⟸   ENSRNOT00000020889
RefSeq Acc Id: XP_063136970   ⟸   XM_063280900
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063136969   ⟸   XM_063280899
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063136971   ⟸   XM_063280901
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063136966   ⟸   XM_063280896
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063136968   ⟸   XM_063280898
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063136965   ⟸   XM_063280895
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063136962   ⟸   XM_063280892
- Peptide Label: isoform X1
- UniProtKB: F1M8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136967   ⟸   XM_063280897
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063136964   ⟸   XM_063280894
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063136963   ⟸   XM_063280893
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8Z5-F1-model_v2 AlphaFold F1M8Z5 1-818 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309633 AgrOrtholog
BioCyc Gene G2FUF-61328 BioCyc
Ensembl Genes ENSRNOG00000015609 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020889.6 UniProtKB/TrEMBL
  ENSRNOT00000021141.8 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Quinonprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR27 UniProtKB/TrEMBL
KEGG Report rno:308222 UniProtKB/TrEMBL
NCBI Gene 308222 ENTREZGENE
PANTHER PTHR44525 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 27 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Wdr27 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015609 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP Quin_alc_DH_like UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A8L2QBP9 ENTREZGENE, UniProtKB/TrEMBL
  F1M8Z5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Wdr27  WD repeat domain 27  LOC102547091  uncharacterized LOC102547091  Data merged from RGD:7706810 737654 PROVISIONAL
2013-12-18 LOC102547091  uncharacterized LOC102547091      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Wdr27  WD repeat domain 27   Wdr27_predicted  WD repeat domain 27 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Wdr27_predicted  WD repeat domain 27 (predicted)  RGD1309633_predicted  similar to RIKEN cDNA 0610012K18 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309633_predicted  similar to RIKEN cDNA 0610012K18 (predicted)  LOC308222_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308222_predicted  similar to RIKEN cDNA 0610012K18 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL