Wdr27 (WD repeat domain 27) - Rat Genome Database

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Gene: Wdr27 (WD repeat domain 27) Mus musculus
Analyze
Symbol: Wdr27
Name: WD repeat domain 27
RGD ID: 1552001
MGI Page MGI
Description: Predicted to be located in nucleoplasm. Orthologous to human WDR27 (WD repeat domain 27).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610012K18Rik; WD repeat-containing protein 27
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,005,092 - 15,163,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,038,781 - 15,163,420 (-)EnsemblGRCm39 Ensembl
GRCm381714,784,829 - 14,943,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,818,519 - 14,943,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371714,955,679 - 15,080,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,555,250 - 14,679,700 (-)NCBIMGSCv36mm8
Celera1715,613,111 - 15,743,823 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Wdr27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,005,092 - 15,163,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,038,781 - 15,163,420 (-)EnsemblGRCm39 Ensembl
GRCm381714,784,829 - 14,943,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,818,519 - 14,943,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371714,955,679 - 15,080,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,555,250 - 14,679,700 (-)NCBIMGSCv36mm8
Celera1715,613,111 - 15,743,823 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
WDR27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,426,420 - 169,702,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,457,212 - 169,702,067 (-)EnsemblGRCh38hg38GRCh38
GRCh376169,857,307 - 170,102,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,599,232 - 169,844,084 (-)NCBINCBI36Build 36hg18NCBI36
Celera6170,567,481 - 170,812,344 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,278,708 - 167,521,934 (-)NCBIHuRef
CHM1_16170,119,555 - 170,364,373 (-)NCBICHM1_1
T2T-CHM13v2.06170,780,064 - 171,055,943 (-)NCBIT2T-CHM13v2.0
Wdr27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,505,375 - 64,623,573 (-)NCBIGRCr8
mRatBN7.2155,832,240 - 55,950,457 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,832,248 - 55,969,038 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,806,051 - 56,949,681 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,808,450 - 56,942,556 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,072,847 - 58,132,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,786,186 - 53,872,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,755,651 - 53,875,323 (-)NCBI
Celera152,046,593 - 52,162,304 (-)NCBICelera
Cytogenetic Map1q12NCBI
Wdr27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,934,842 - 4,125,395 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,928,775 - 4,123,191 (+)NCBIChiLan1.0ChiLan1.0
WDR27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25189,715,422 - 189,952,751 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,599,066 - 187,836,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,533,231 - 167,774,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,372,009 - 172,606,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,372,379 - 172,594,078 (-)Ensemblpanpan1.1panPan2
WDR27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,573,432 - 56,787,929 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,565,696 - 56,788,150 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,362,791 - 57,583,191 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,755,050 - 56,969,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,755,069 - 56,969,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,649,807 - 56,864,141 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,497,428 - 56,712,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,125,038 - 57,341,209 (-)NCBIUU_Cfam_GSD_1.0
Wdr27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,751,167 - 150,902,951 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648917,968,684 - 18,154,912 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,023,695 - 18,154,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1578,480 - 653,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11578,491 - 720,106 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21955,861 - 1,224,451 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,241,421 - 97,500,147 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604069,235,900 - 69,505,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248505,443,035 - 5,632,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr27
3019 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:95
Interacting mature miRNAs:97
Transcripts:ENSMUST00000170386
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
AI607394  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381714,939,367 - 14,939,496UniSTSGRCm38
MGSCv371715,076,372 - 15,076,501UniSTSGRCm37
Celera1715,740,066 - 15,740,195UniSTS
Cytogenetic Map17A2UniSTS
Whitehead/MRC_RH17219.32UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC182749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV277048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000170386   ⟹   ENSMUSP00000126736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,049,593 - 15,154,915 (-)Ensembl
GRCm38.p6 Ensembl1714,829,331 - 14,934,653 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,161,850 - 15,163,348 (-)Ensembl
GRCm38.p6 Ensembl1714,941,588 - 14,943,086 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,159,573 - 15,163,339 (-)Ensembl
GRCm38.p6 Ensembl1714,939,311 - 14,943,077 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228233   ⟹   ENSMUSP00000158684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,049,593 - 15,129,781 (-)Ensembl
GRCm38.p6 Ensembl1714,829,331 - 14,909,519 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228330   ⟹   ENSMUSP00000153717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,038,934 - 15,163,386 (-)Ensembl
GRCm38.p6 Ensembl1714,818,672 - 14,943,124 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,158,105 - 15,163,420 (-)Ensembl
GRCm38.p6 Ensembl1714,937,843 - 14,943,158 (-)Ensembl
Ensembl Acc Id: ENSMUST00000232147   ⟹   ENSMUSP00000155992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,038,781 - 15,154,921 (-)Ensembl
GRCm38.p6 Ensembl1714,818,519 - 14,934,659 (-)Ensembl
Ensembl Acc Id: ENSMUST00000238668   ⟹   ENSMUSP00000158649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,049,593 - 15,163,382 (-)Ensembl
GRCm38.p6 Ensembl1714,829,331 - 14,943,120 (-)Ensembl
RefSeq Acc Id: NM_175173   ⟹   NP_780382
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,038,934 - 15,163,386 (-)NCBI
GRCm381714,818,672 - 14,943,124 (-)NCBI
MGSCv371714,955,679 - 15,080,129 (-)RGD
Celera1715,613,111 - 15,743,823 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524925   ⟹   XP_006524988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,061,154 - 15,163,535 (-)NCBI
GRCm381714,840,892 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524926   ⟹   XP_006524989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,061,154 - 15,163,534 (-)NCBI
GRCm381714,840,891 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524928   ⟹   XP_006524991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,049,499 - 15,163,534 (-)NCBI
GRCm381714,829,237 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524929   ⟹   XP_006524992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,005,092 - 15,163,534 (-)NCBI
GRCm381714,784,829 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524931   ⟹   XP_006524994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,113,442 - 15,163,537 (-)NCBI
GRCm381714,893,180 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524934   ⟹   XP_006524997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,061,155 - 15,144,908 (-)NCBI
GRCm381714,840,892 - 14,924,647 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524936   ⟹   XP_006524999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,134,187 - 15,163,539 (-)NCBI
GRCm381714,913,925 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246611   ⟹   XP_011244913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,068,505 - 15,163,535 (-)NCBI
GRCm381714,848,243 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246612   ⟹   XP_011244914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,038,828 - 15,163,534 (-)NCBI
GRCm381714,818,565 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246616   ⟹   XP_011244918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,103,922 - 15,163,537 (-)NCBI
GRCm381714,883,660 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246617   ⟹   XP_011244919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,113,444 - 15,163,537 (-)NCBI
GRCm381714,893,182 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317639   ⟹   XP_017173128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,061,153 - 15,155,056 (-)NCBI
GRCm381714,840,891 - 14,934,794 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317640   ⟹   XP_017173129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,061,154 - 15,163,535 (-)NCBI
GRCm381714,840,892 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317641   ⟹   XP_017173130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,129,775 - 15,163,540 (-)NCBI
GRCm381714,909,513 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317642   ⟹   XP_017173131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,130,286 - 15,163,540 (-)NCBI
GRCm381714,910,024 - 14,943,240 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001782112
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,049,499 - 15,163,538 (-)NCBI
GRCm381714,829,237 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952182
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,049,499 - 15,163,537 (-)NCBI
GRCm381714,829,237 - 14,943,259 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939577
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,096,356 - 15,163,536 (-)NCBI
Sequence:
RefSeq Acc Id: NP_780382   ⟸   NM_175173
- UniProtKB: Q8CA00 (UniProtKB/Swiss-Prot),   Q8C5V5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524992   ⟸   XM_006524929
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006524991   ⟸   XM_006524928
- Peptide Label: isoform X3
- UniProtKB: A0A338P6H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524989   ⟸   XM_006524926
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006524988   ⟸   XM_006524925
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006524997   ⟸   XM_006524934
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006524994   ⟸   XM_006524931
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006524999   ⟸   XM_006524936
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_011244914   ⟸   XM_011246612
- Peptide Label: isoform X3
- UniProtKB: A0A338P6H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244913   ⟸   XM_011246611
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011244918   ⟸   XM_011246616
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011244919   ⟸   XM_011246617
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017173128   ⟸   XM_017317639
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017173129   ⟸   XM_017317640
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017173130   ⟸   XM_017317641
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017173131   ⟸   XM_017317642
- Peptide Label: isoform X10
- Sequence:
Ensembl Acc Id: ENSMUSP00000126736   ⟸   ENSMUST00000170386
Ensembl Acc Id: ENSMUSP00000158649   ⟸   ENSMUST00000238668
Ensembl Acc Id: ENSMUSP00000153717   ⟸   ENSMUST00000228330
Ensembl Acc Id: ENSMUSP00000158684   ⟸   ENSMUST00000228233
Ensembl Acc Id: ENSMUSP00000155992   ⟸   ENSMUST00000232147

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C5V5-F1-model_v2 AlphaFold Q8C5V5 1-780 view protein structure

Promoters
RGD ID:13674806
Promoter ID:EPDNEW_M21552
Type:initiation region
Name:Wdr27_1
Description:Mus musculus WD repeat domain 27 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381714,943,076 - 14,943,136EPDNEW
RGD ID:6828918
Promoter ID:MM_KWN:22197
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001083880,   NM_001083881,   NM_001083882,   NM_026451,   NM_175173,   UC008ANE.1,   UC008ANF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361715,079,931 - 15,083,027 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918932 AgrOrtholog
Ensembl Genes ENSMUSG00000046991 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000170386.2 UniProtKB/Swiss-Prot
  ENSMUST00000228233.2 UniProtKB/TrEMBL
  ENSMUST00000228330 ENTREZGENE
  ENSMUST00000228330.2 UniProtKB/Swiss-Prot
  ENSMUST00000232147 ENTREZGENE
  ENSMUST00000232147.2 UniProtKB/TrEMBL
  ENSMUST00000238668 ENTREZGENE
  ENSMUST00000238668.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Quinoprotein_ADH-like_supfam UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71682 UniProtKB/Swiss-Prot
MGD MGI:1918932 ENTREZGENE
NCBI Gene 71682 ENTREZGENE
PANTHER PTHR44525 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr27 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50998 UniProtKB/Swiss-Prot
UniProt A0A338P6H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A571BED2_MOUSE UniProtKB/TrEMBL
  Q8C5V5 ENTREZGENE
  Q8CA00 ENTREZGENE
  WDR27_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8CA00 UniProtKB/Swiss-Prot