Npas1 (neuronal PAS domain protein 1) - Rat Genome Database

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Gene: Npas1 (neuronal PAS domain protein 1) Rattus norvegicus
Analyze
Symbol: Npas1
Name: neuronal PAS domain protein 1
RGD ID: 1310040
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within maternal behavior; negative regulation of transcription by RNA polymerase II; and startle response. Predicted to be located in nucleus. Orthologous to human NPAS1 (neuronal PAS domain protein 1); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC308387; neuronal PAS domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,295,509 - 86,316,018 (-)NCBIGRCr8
mRatBN7.2177,167,375 - 77,187,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,167,381 - 77,186,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,541,220 - 82,560,544 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,105,251 - 91,124,577 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,296,315 - 84,315,640 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,420,646 - 78,441,841 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,420,652 - 78,440,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,667,887 - 79,689,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,719,188 - 76,738,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,797,302 - 76,816,676 (-)NCBI
Celera171,653,044 - 71,672,297 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15347806   PMID:15635607   PMID:20181579   PMID:27782878  


Genomics

Comparative Map Data
Npas1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,295,509 - 86,316,018 (-)NCBIGRCr8
mRatBN7.2177,167,375 - 77,187,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,167,381 - 77,186,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,541,220 - 82,560,544 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,105,251 - 91,124,577 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,296,315 - 84,315,640 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,420,646 - 78,441,841 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,420,652 - 78,440,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,667,887 - 79,689,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,719,188 - 76,738,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,797,302 - 76,816,676 (-)NCBI
Celera171,653,044 - 71,672,297 (-)NCBICelera
Cytogenetic Map1q21NCBI
NPAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,019,837 - 47,045,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,019,837 - 47,045,775 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,523,094 - 47,549,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,215,983 - 52,240,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,215,982 - 52,240,856NCBI
Celera1944,328,506 - 44,352,897 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,948,324 - 43,973,242 (+)NCBIHuRef
CHM1_11947,525,998 - 47,550,893 (+)NCBICHM1_1
T2T-CHM13v2.01949,845,776 - 49,871,084 (+)NCBIT2T-CHM13v2.0
Npas1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,189,643 - 16,210,741 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,189,646 - 16,211,653 (-)EnsemblGRCm39 Ensembl
GRCm38716,455,721 - 16,476,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,455,721 - 16,477,728 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,041,070 - 17,062,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,614,243 - 15,634,210 (-)NCBIMGSCv36mm8
Celera713,650,603 - 13,671,661 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.14NCBI
Npas1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574994,042 - 1,008,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574994,074 - 1,008,892 (+)NCBIChiLan1.0ChiLan1.0
NPAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,167,150 - 53,193,184 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,038,495 - 55,064,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,009,719 - 44,035,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,537,339 - 52,562,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,537,387 - 52,562,157 (+)Ensemblpanpan1.1panPan2
NPAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,918,638 - 108,934,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,893,170 - 108,936,337 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,398,578 - 108,413,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,443,845 - 109,459,011 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,443,965 - 109,459,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,111,312 - 109,126,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,755,506 - 108,770,717 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,624,056 - 109,639,218 (-)NCBIUU_Cfam_GSD_1.0
Npas1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,180,510 - 19,195,907 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664799,751 - 813,937 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664799,864 - 814,022 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,845,207 - 52,875,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,857,739 - 52,874,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,226,271 - 48,248,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,363,724 - 40,390,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,365,840 - 40,390,771 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,075,346 - 20,100,337 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Npas1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,627,281 - 6,642,228 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,627,155 - 6,642,254 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Npas1
63 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:70
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000020855
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat

Markers in Region
D1Rat24  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,180,888 - 77,181,061 (+)MAPPERmRatBN7.2
Rnor_6.0178,434,500 - 78,434,672NCBIRnor6.0
Rnor_5.0179,681,741 - 79,681,913UniSTSRnor5.0
RGSC_v3.4176,732,693 - 76,732,866RGDRGSC3.4
RGSC_v3.4176,732,694 - 76,732,866UniSTSRGSC3.4
RGSC_v3.1176,810,805 - 76,810,977RGD
Celera171,666,540 - 71,666,712UniSTS
RH 3.4 Map1772.5RGD
RH 3.4 Map1772.5UniSTS
SHRSP x BN Map140.07UniSTS
SHRSP x BN Map140.07RGD
FHH x ACI Map139.0099RGD
Cytogenetic Map1q21UniSTS
RH130271  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,169,399 - 77,169,591 (+)MAPPERmRatBN7.2
Rnor_6.0178,422,671 - 78,422,862NCBIRnor6.0
Rnor_5.0179,669,912 - 79,670,103UniSTSRnor5.0
RGSC_v3.4176,721,207 - 76,721,398UniSTSRGSC3.4
Celera171,655,063 - 71,655,254UniSTS
RH 3.4 Map1787.2UniSTS
Cytogenetic Map1q21UniSTS
PMC19579P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,167,673 - 77,167,887 (+)MAPPERmRatBN7.2
Rnor_6.0178,420,945 - 78,421,158NCBIRnor6.0
Rnor_5.0179,668,186 - 79,668,399UniSTSRnor5.0
RGSC_v3.4176,719,481 - 76,719,694UniSTSRGSC3.4
Celera171,653,337 - 71,653,550UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25
Low 2 4 18 10 16 10 2 41 7 8 9
Below cutoff 1 21 23 15 3 15 8 9 8 16 25 2 8

Sequence


RefSeq Acc Id: ENSRNOT00000020855   ⟹   ENSRNOP00000020855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,167,381 - 77,186,762 (-)Ensembl
Rnor_6.0 Ensembl178,420,652 - 78,440,738 (-)Ensembl
RefSeq Acc Id: NM_001107479   ⟹   NP_001100949
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,295,515 - 86,314,893 (-)NCBI
mRatBN7.2177,167,381 - 77,186,762 (-)NCBI
Rnor_6.0178,420,652 - 78,440,738 (-)NCBI
Rnor_5.0179,667,887 - 79,689,084 (-)NCBI
RGSC_v3.4176,719,188 - 76,738,565 (-)RGD
Celera171,653,044 - 71,672,297 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228413   ⟹   XP_006228475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,295,509 - 86,316,018 (-)NCBI
mRatBN7.2177,167,375 - 77,187,887 (-)NCBI
Rnor_6.0178,420,646 - 78,441,841 (-)NCBI
Rnor_5.0179,667,887 - 79,689,084 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100949 (Get FASTA)   NCBI Sequence Viewer  
  XP_006228475 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM08319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020855
  ENSRNOP00000020855.3
RefSeq Acc Id: NP_001100949   ⟸   NM_001107479
- UniProtKB: D3ZJ66 (UniProtKB/TrEMBL),   A6J8B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228475   ⟸   XM_006228413
- Peptide Label: isoform X1
- UniProtKB: D3ZJ66 (UniProtKB/TrEMBL),   A6J8B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020855   ⟸   ENSRNOT00000020855
Protein Domains
bHLH   PAS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ66-F1-model_v2 AlphaFold D3ZJ66 1-595 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310040 AgrOrtholog
BioCyc Gene G2FUF-60608 BioCyc
Ensembl Genes ENSRNOG00000015376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020855 ENTREZGENE
  ENSRNOT00000020855.5 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro HLH_DNA-bd UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/TrEMBL
KEGG Report rno:308387 UniProtKB/TrEMBL
NCBI Gene 308387 ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA UniProtKB/TrEMBL
  NEURONAL PAS DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS_3 UniProtKB/TrEMBL
PhenoGen Npas1 PhenoGen
PROSITE HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015376 RatGTEx
SMART HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
Superfamily-SCOP HLH_basic UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
UniProt A6J8B4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ66 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Npas1  neuronal PAS domain protein 1   Npas1_predicted  neuronal PAS domain protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Npas1_predicted  neuronal PAS domain protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED