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Gene: Npas1 (neuronal PAS domain protein 1) Rattus norvegicus
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Symbol: Npas1
Name: neuronal PAS domain protein 1
RGD ID: 1310040
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in maternal behavior; negative regulation of transcription by RNA polymerase II; and startle response. Predicted to localize to nuclear chromatin. Orthologous to human NPAS1 (neuronal PAS domain protein 1); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC308387; neuronal PAS domain-containing protein 1
Orthologs:
Homo sapiens (human) : NPAS1 (neuronal PAS domain protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Npas1 (neuronal PAS domain protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Npas1 (neuronal PAS domain protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : NPAS1 (neuronal PAS domain protein 1)
Canis lupus familiaris (dog) : NPAS1 (neuronal PAS domain protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Npas1 (neuronal PAS domain protein 1)
Sus scrofa (pig) : NPAS1 (neuronal PAS domain protein 1)
Chlorocebus sabaeus (African green monkey) : NPAS1 (neuronal PAS domain protein 1)
Heterocephalus glaber (naked mole-rat) : Npas1 (neuronal PAS domain protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0178,420,646 - 78,441,841 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,420,652 - 78,440,738 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,667,887 - 79,689,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,719,188 - 76,738,565 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1176,797,302 - 76,816,676 (-)NCBI
Celera171,653,044 - 71,672,297 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Npas1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310040
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.