LOC120100130 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120100130 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120100130 (Ensembl: LOC120100131)
Name: U6 spliceosomal RNA
RGD ID: 41387258
Description: INTERACTS WITH lipopolysaccharide (ortholog); S-(1,2-dichlorovinyl)-L-cysteine (ortholog)
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,429,068 - 66,429,174 (+)NCBIGRCr8
mRatBN7.2157,755,979 - 57,756,085 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl157,755,979 - 57,756,085 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl123,131,350 - 23,131,456 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC120100130
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,429,068 - 66,429,174 (+)NCBIGRCr8
mRatBN7.2157,755,979 - 57,756,085 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl157,755,979 - 57,756,085 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl123,131,350 - 23,131,456 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1q12NCBI
RNU6-37P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,298,966 - 10,299,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,298,966 - 10,299,072 (+)EnsemblGRCh38hg38GRCh38
GRCh37110,359,024 - 10,359,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.22NCBI
CHM1_1110,347,904 - 10,348,008 (+)NCBICHM1_1
T2T-CHM13v2.019,842,559 - 9,842,664 (+)NCBIT2T-CHM13v2.0
LOC119874108
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1113,759,308 - 13,759,414 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01115,693,988 - 15,694,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1115,693,988 - 15,694,094 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,428,479 - 14,428,585 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,280,458 - 14,280,564 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,875,779 - 14,875,885 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005499923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000096133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl123,131,350 - 23,131,456 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl157,755,979 - 57,756,085 (+)Ensembl
RefSeq Acc Id: XR_005499923
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,429,068 - 66,429,174 (+)NCBI
mRatBN7.2157,755,979 - 57,756,085 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-61284 BioCyc
Ensembl Genes ENSRNOG00000062738 Ensembl
  ENSRNOG00000070032 Ensembl
NCBI Gene LOC120100130 ENTREZGENE
PhenoGen LOC120100130 PhenoGen
RatGTEx ENSRNOG00000062738 RatGTEx
  ENSRNOG00000070032 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100130  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150342962 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120100130  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL