Psmb1 (proteasome 20S subunit beta 1)

Gene: Psmb1 (proteasome 20S subunit beta 1) Rattus norvegicus

Analyze

Symbol:

Psmb1

Name:

proteasome 20S subunit beta 1

Description:

Predicted to have endopeptidase activity. Predicted to be involved in proteasomal ubiquitin-independent protein catabolic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to localize to the cytoplasm; nucleus; and proteasome core complex, beta-subunit complex. Orthologous to human PSMB1 (proteasome subunit beta 1); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

macropain subunit C5; multicatalytic endopeptidase complex subunit C5; proteasome (prosome, macropain) subunit, beta type 1; proteasome beta 1 subunit; proteasome component C5; proteasome gamma chain; proteasome subunit beta 1; proteasome subunit beta type-1; proteasome subunit RC5

Orthologs:

Homo sapiens (human) : PSMB1 (proteasome 20S subunit beta 1) HGNC Alliance
Mus musculus (house mouse) : Psmb1 (proteasome (prosome, macropain) subunit, beta type 1) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Psmb1 (proteasome 20S subunit beta 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PSMB1 (proteasome 20S subunit beta 1)
Canis lupus familiaris (dog) : PSMB1 (proteasome subunit beta 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Psmb1 (proteasome 20S subunit beta 1)
Sus scrofa (pig) : PSMB1 (proteasome 20S subunit beta 1)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSMB1 (proteasome 20S subunit beta 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Psmb1 (proteasome (prosome, macropain) subunit, beta type 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Psmb1 (proteasome 20S subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSMB1 (proteasome 20S subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSMB1 (proteasome subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psmb1 (proteasome 20S subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSMB1 (proteasome 20S subunit beta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PSMB1 (proteasome 20S subunit beta 1)	Alliance	DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Mus musculus (house mouse):	Psmb1 (proteasome (prosome, macropain) subunit, beta type 1)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	psmb1 (proteasome subunit beta 1)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Saccharomyces cerevisiae (baker's yeast):	PRE7	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Drosophila melanogaster (fruit fly):	Prosbeta6	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Caenorhabditis elegans (roundworm):	pbs-6	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	57,470,878 - 57,491,359 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	58,399,237 - 58,419,917 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	54,369,775 - 54,388,816 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	54,372,719 - 54,391,761 (-)	NCBI
Celera	1	52,648,620 - 52,666,985 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

Molecular Pathway Annotations

References - curated

References - uncurated

Genomics

Comparative Map Data

Position Markers

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links

Nomenclature History

More on Psmb1
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	621092
Created:	2002-08-06
Species:	Rattus norvegicus
Last Modified:	2019-09-24
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable	Ortholog Finder unavailable
Gene Enrichment	Ortholog Finder

Imported Annotations - ClinVar

Imported Annotations - CTD

Imported Annotations - KEGG (archival)