Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Chd1 (chromodomain helicase DNA binding protein 1) Rattus norvegicus
Analyze
Symbol: Chd1
Name: chromodomain helicase DNA binding protein 1
Description: Predicted to have methylated histone binding activity. Predicted to be involved in chromatin remodeling; covalent chromatin modification; and positive regulation by host of viral transcription. Predicted to localize to the cytoplasm and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: chromodomain-helicase-DNA-binding protein 1; LOC308215
Orthologs:
Homo sapiens (human) : CHD1 (chromodomain helicase DNA binding protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Chd1 (chromodomain helicase DNA binding protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Chd1 (chromodomain helicase DNA binding protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CHD1 (chromodomain helicase DNA binding protein 1)
Canis lupus familiaris (dog) : CHD1 (chromodomain helicase DNA binding protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Chd1 (chromodomain helicase DNA binding protein 1)
Sus scrofa (pig) : CHD1 (chromodomain helicase DNA binding protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0157,692,828 - 57,756,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,692,836 - 57,755,485 (+)Ensembl
Rnor_5.0158,619,223 - 58,683,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,594,860 - 54,631,157 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1154,565,816 - 54,634,109 (+)NCBI
Celera152,866,469 - 52,930,419 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Chd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306794
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.