Zfp52 (zinc finger protein 52) - Rat Genome Database

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Gene: Zfp52 (zinc finger protein 52) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp52
Name: zinc finger protein 52
RGD ID: 1359149
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102547671; LOC361487; LOC690514; similar to KRAB-containing zinc-finger protein KRAZ1; similar to zinc finger protein 52; zinc finger protein 695-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,998,534 - 70,036,017 (+)NCBIGRCr8
mRatBN7.2161,326,960 - 61,363,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,335,270 - 61,363,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,091,777 - 66,119,608 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0174,773,573 - 74,801,380 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0168,001,823 - 68,029,656 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0161,389,594 - 61,426,327 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,382,118 - 61,426,320 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,472,853 - 62,500,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4159,540,774 - 59,568,607 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1159,543,718 - 59,571,549 (+)NCBI
Celera157,446,253 - 57,474,074 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Variants

.
Variants in Zfp52
136 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7
Count of miRNA genes:7
Interacting mature miRNAs:7
Transcripts:ENSRNOT00000050119
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat

Markers in Region
BE104319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,338,717 - 61,338,934 (+)MAPPERmRatBN7.2
Rnor_6.0161,401,941 - 61,402,157NCBIRnor6.0
Rnor_5.0162,476,300 - 62,476,516UniSTSRnor5.0
RGSC_v3.4159,544,221 - 59,544,437UniSTSRGSC3.4
Celera157,449,700 - 57,449,916UniSTS
RH 3.4 Map1682.0UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000050119   ⟹   ENSRNOP00000044868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,335,270 - 61,363,102 (+)Ensembl
Rnor_6.0 Ensembl161,382,118 - 61,426,320 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118803   ⟹   ENSRNOP00000094976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,355,013 - 61,363,102 (+)Ensembl
RefSeq Acc Id: NM_001014158   ⟹   NP_001014180
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,008,185 - 70,036,017 (+)NCBI
mRatBN7.2161,335,270 - 61,363,105 (+)NCBI
Rnor_6.0161,398,494 - 61,426,327 (+)NCBI
Rnor_5.0162,472,853 - 62,500,686 (+)NCBI
RGSC_v3.4159,540,774 - 59,568,607 (+)RGD
Celera157,446,253 - 57,474,074 (+)RGD
Sequence:
RefSeq Acc Id: XM_017589343   ⟹   XP_017444832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,000,062 - 70,036,017 (+)NCBI
mRatBN7.2161,326,960 - 61,363,105 (+)NCBI
Rnor_6.0161,389,594 - 61,426,289 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589345   ⟹   XP_017444834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,012,961 - 70,036,017 (+)NCBI
mRatBN7.2161,340,160 - 61,363,105 (+)NCBI
Rnor_6.0161,403,421 - 61,426,289 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081333   ⟹   XP_038937261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,008,330 - 70,036,017 (+)NCBI
mRatBN7.2161,335,265 - 61,363,105 (+)NCBI
RefSeq Acc Id: XM_039081334   ⟹   XP_038937262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,008,329 - 70,036,017 (+)NCBI
mRatBN7.2161,335,265 - 61,363,105 (+)NCBI
RefSeq Acc Id: XM_039081349   ⟹   XP_038937277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,012,931 - 70,036,017 (+)NCBI
mRatBN7.2161,340,201 - 61,363,105 (+)NCBI
RefSeq Acc Id: XM_039081352   ⟹   XP_038937280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,008,324 - 70,036,017 (+)NCBI
mRatBN7.2161,335,265 - 61,363,105 (+)NCBI
RefSeq Acc Id: XM_039081361   ⟹   XP_038937289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,013,146 - 70,036,017 (+)NCBI
mRatBN7.2161,340,201 - 61,363,105 (+)NCBI
RefSeq Acc Id: XM_063266237   ⟹   XP_063122307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,998,535 - 70,036,017 (+)NCBI
RefSeq Acc Id: XM_063266243   ⟹   XP_063122313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8170,013,400 - 70,036,017 (+)NCBI
RefSeq Acc Id: XM_063266251   ⟹   XP_063122321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,998,534 - 70,036,017 (+)NCBI
RefSeq Acc Id: NP_001014180   ⟸   NM_001014158
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444832   ⟸   XM_017589343
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444834   ⟸   XM_017589345
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044868   ⟸   ENSRNOT00000050119
RefSeq Acc Id: XP_038937262   ⟸   XM_039081334
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937261   ⟸   XM_039081333
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937280   ⟸   XM_039081352
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937289   ⟸   XM_039081361
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937277   ⟸   XM_039081349
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094976   ⟸   ENSRNOT00000118803
RefSeq Acc Id: XP_063122321   ⟸   XM_063266251
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122307   ⟸   XM_063266237
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122313   ⟸   XM_063266243
- Peptide Label: isoform X1
- UniProtKB: Q5U2X3 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2X3-F1-model_v2 AlphaFold Q5U2X3 1-755 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359149 AgrOrtholog
BioCyc Gene G2FUF-61163 BioCyc
Ensembl Genes ENSRNOG00000042826 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050119.6 UniProtKB/TrEMBL
  ENSRNOT00000118803.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131994 IMAGE-MGC_LOAD
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:361487 UniProtKB/TrEMBL
MGC_CLONE MGC:94286 IMAGE-MGC_LOAD
NCBI Gene 361487 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp52 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042826 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6GKY8_RAT UniProtKB/TrEMBL
  Q5U2X3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Zfp52  zinc finger protein 52  LOC102547671  zinc finger protein 695-like  Data merged from RGD:7622070 737654 PROVISIONAL
2015-07-29 Zfp52  zinc finger protein 52  LOC690514  similar to zinc finger protein 52  Data merged from RGD:1594740 737654 PROVISIONAL
2013-12-18 LOC102547671  zinc finger protein 695-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Zfp52  zinc finger protein 52  LOC361487  similar to KRAB-containing zinc-finger protein KRAZ1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690514  similar to zinc finger protein 52      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-29 LOC361487  similar to KRAB-containing zinc-finger protein KRAZ1      Symbol and Name status set to provisional 70820 PROVISIONAL