Ppp5c (protein phosphatase 5, catalytic subunit) - Rat Genome Database

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Gene: Ppp5c (protein phosphatase 5, catalytic subunit) Rattus norvegicus
Analyze
Symbol: Ppp5c
Name: protein phosphatase 5, catalytic subunit
RGD ID: 68415
Description: Enables several functions, including G-protein alpha-subunit binding activity; heat shock protein binding activity; and microtubule binding activity. Involved in several processes, including cellular response to hydrogen peroxide; positive regulation of glucocorticoid receptor signaling pathway; and response to arachidonic acid. Located in perikaryon and proximal dendrite. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit); PARTICIPATES IN Rho/Rac/Cdc42 mediated signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: PP5; PPT; protein phosphatase T; serine/threonine-protein phosphatase 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,818,297 - 86,842,505 (-)NCBIGRCr8
mRatBN7.2177,690,203 - 77,714,507 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,690,208 - 77,714,456 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,070,376 - 83,094,770 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,634,443 - 91,658,837 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,825,481 - 84,849,875 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,944,054 - 78,968,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,944,040 - 78,968,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,191,557 - 80,216,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,345,194 - 77,369,417 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,423,304 - 77,447,528 (-)NCBI
Celera172,175,254 - 72,199,561 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acrylamide  (EXP,ISO)
actinomycin D  (ISO)
ADP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
ATP  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bortezomib  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
capsaicin  (EXP)
CGP 52608  (ISO)
chlorogenic acid  (ISO)
clobetasol  (ISO)
clozapine  (ISO)
cocaine  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
fulvestrant  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
haloperidol  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (EXP,ISO)
inulin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
Maduramicin  (EXP,ISO)
N-acetyl-L-cysteine  (EXP,ISO)
nitric oxide  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
potassium cyanide  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
thiram  (ISO)
topiramate  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning of a protein serine/threonine phosphatase containing a putative regulatory tetratricopeptide repeat domain. Becker W, etal., J Biol Chem 1994 Sep 9;269(36):22586-92.
2. ATM protein kinase: the linchpin of cellular defenses to stress. Bhatti S, etal., Cell Mol Life Sci. 2011 Sep;68(18):2977-3006. doi: 10.1007/s00018-011-0683-9. Epub 2011 May 2.
3. Cadmium activates the mitogen-activated protein kinase (MAPK) pathway via induction of reactive oxygen species and inhibition of protein phosphatases 2A and 5. Chen L, etal., Free Radic Biol Med. 2008 Oct 1;45(7):1035-44. doi: 10.1016/j.freeradbiomed.2008.07.011. Epub 2008 Jul 26.
4. Hydrogen peroxide-induced neuronal apoptosis is associated with inhibition of protein phosphatase 2A and 5, leading to activation of MAPK pathway. Chen L, etal., Int J Biochem Cell Biol. 2009 Jun;41(6):1284-95. doi: 10.1016/j.biocel.2008.10.029. Epub 2008 Nov 6.
5. The tetratricopeptide repeat domain of protein phosphatase 5 mediates binding to glucocorticoid receptor heterocomplexes and acts as a dominant negative mutant. Chen MS, etal., J Biol Chem. 1996 Dec 13;271(50):32315-20.
6. Targeting of a distinctive protein-serine phosphatase to the protein kinase-like domain of the atrial natriuretic peptide receptor. Chinkers M Proc Natl Acad Sci U S A 1994 Nov 8;91(23):11075-9.
7. Identification of pseudo 'phosphothreonyl-specific' protein phosphatase T with a fraction of polycation-stimulated protein phosphatase 2A. Deana AD and Pinna LA, Biochim Biophys Acta. 1988 Feb 22;968(2):179-85.
8. Inhibition of protein serine/threonine phosphatases by fumonisin B1, a mycotoxin. Fukuda H, etal., Biochem Biophys Res Commun. 1996 Mar 7;220(1):160-5.
9. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. Rac GTPase signaling through the PP5 protein phosphatase. Gentile S, etal., Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5202-6. Epub 2006 Mar 20.
11. Modulation of cardiac contractility by serine/threonine protein phosphatase type 5. Gergs U, etal., Int J Cardiol. 2012 Jan 26;154(2):116-21. doi: 10.1016/j.ijcard.2010.09.009. Epub 2010 Sep 28.
12. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
13. Dephosphorylation of microtubule-associated protein tau by protein phosphatase 5. Gong CX, etal., J Neurochem. 2004 Jan;88(2):298-310.
14. Dephosphorylation of tau by protein phosphatase 5: impairment in Alzheimer's disease. Liu F, etal., J Biol Chem. 2005 Jan 21;280(3):1790-6. doi: 10.1074/jbc.M410775200. Epub 2004 Nov 15.
15. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
16. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. Early postnatal lead exposure induces tau phosphorylation in the brain of young rats. Rahman A, etal., Acta Biol Hung. 2012 Dec;63(4):411-25. doi: 10.1556/ABiol.63.2012.4.1.
19. Over activation of hippocampal serine/threonine protein phosphatases PP1 and PP2A is involved in lead-induced deficits in learning and memory in young rats. Rahman A, etal., Neurotoxicology. 2012 Jun;33(3):370-83. doi: 10.1016/j.neuro.2012.02.014. Epub 2012 Mar 1.
20. GOA pipeline RGD automated data pipeline
21. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
22. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
23. Cellular co-localization of protein phosphatase 5 and glucocorticoid receptors in rat brain. Rossie S, etal., Brain Res. 2006 Sep 21;1111(1):1-11. Epub 2006 Aug 8.
24. Protein phosphatase 5 protects neurons against amyloid-beta toxicity. Sanchez-Ortiz E, etal., J Neurochem. 2009 Oct;111(2):391-402. doi: 10.1111/j.1471-4159.2009.06337.x. Epub 2009 Aug 17.
25. Formation of a tumour necrosis factor receptor 1 molecular scaffolding complex and activation of apoptosis signal-regulating kinase 1 during seizure-induced neuronal death. Shinoda S, etal., Eur J Neurosci. 2003 May;17(10):2065-76.
26. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
27. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
28. Regulation of the Raf-MEK-ERK pathway by protein phosphatase 5. von Kriegsheim A, etal., Nat Cell Biol. 2006 Sep;8(9):1011-6. Epub 2006 Aug 6.
29. Galpha(12) and Galpha(13) interact with Ser/Thr protein phosphatase type 5 and stimulate its phosphatase activity. Yamaguchi Y, etal., Curr Biol. 2002 Aug 6;12(15):1353-8.
30. Human blue-light photoreceptor hCRY2 specifically interacts with protein serine/threonine phosphatase 5 and modulates its activity. Zhao S and Sancar A, Photochem Photobiol. 1997 Nov;66(5):727-31.
Additional References at PubMed
PMID:12761501   PMID:12885400   PMID:15713458   PMID:15967796   PMID:16102737   PMID:19948726   PMID:21360678   PMID:21936910   PMID:23184943   PMID:29127155   PMID:30053369   PMID:30699359  
PMID:35043508   PMID:36494772  


Genomics

Comparative Map Data
Ppp5c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,818,297 - 86,842,505 (-)NCBIGRCr8
mRatBN7.2177,690,203 - 77,714,507 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,690,208 - 77,714,456 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,070,376 - 83,094,770 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,634,443 - 91,658,837 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,825,481 - 84,849,875 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,944,054 - 78,968,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,944,040 - 78,968,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,191,557 - 80,216,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,345,194 - 77,369,417 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,423,304 - 77,447,528 (-)NCBI
Celera172,175,254 - 72,199,561 (-)NCBICelera
Cytogenetic Map1q21NCBI
PPP5C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,347,087 - 46,390,975 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,347,087 - 46,392,981 (+)EnsemblGRCh38hg38GRCh38
GRCh371946,850,344 - 46,894,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,542,134 - 51,585,945 (+)NCBINCBI36Build 36hg18NCBI36
Build 341951,542,133 - 51,585,943NCBI
Celera1943,655,283 - 43,699,097 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,278,270 - 43,321,600 (+)NCBIHuRef
CHM1_11946,852,100 - 46,896,253 (+)NCBICHM1_1
T2T-CHM13v2.01949,174,533 - 49,218,356 (+)NCBIT2T-CHM13v2.0
Ppp5c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,738,575 - 16,761,812 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,738,565 - 16,761,849 (-)EnsemblGRCm39 Ensembl
GRCm38717,004,640 - 17,027,914 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl717,004,640 - 17,027,924 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,589,989 - 17,613,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36716,163,174 - 16,186,392 (-)NCBIMGSCv36mm8
Celera714,212,052 - 14,235,384 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
Ppp5c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574523,005 - 546,923 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574523,044 - 545,461 (+)NCBIChiLan1.0ChiLan1.0
PPP5C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,486,530 - 52,530,347 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,357,856 - 54,401,469 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,329,680 - 43,373,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,865,317 - 51,908,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,865,317 - 51,909,027 (+)Ensemblpanpan1.1panPan2
PPP5C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,453,768 - 109,470,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,454,107 - 109,467,087 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,932,919 - 108,952,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,980,222 - 109,999,640 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,980,225 - 109,999,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,656,345 - 109,675,726 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,290,676 - 109,310,075 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,159,739 - 110,179,155 (-)NCBIUU_Cfam_GSD_1.0
PPP5C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,377,979 - 52,402,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,373,266 - 52,402,048 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,637,025 - 47,660,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP5C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,726,627 - 39,767,467 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,726,623 - 39,767,464 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,404,799 - 19,445,738 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp5c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,100,216 - 7,126,500 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,100,309 - 7,126,296 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp5c
47 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:59
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000023078
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat

Markers in Region
AW558946  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,690,573 - 77,690,698 (+)MAPPERmRatBN7.2
Rnor_6.0178,944,425 - 78,944,549NCBIRnor6.0
Rnor_5.0180,191,928 - 80,192,052UniSTSRnor5.0
RGSC_v3.4177,345,557 - 77,345,681UniSTSRGSC3.4
Celera172,175,617 - 72,175,741UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000023078   ⟹   ENSRNOP00000023078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,690,208 - 77,714,456 (-)Ensembl
Rnor_6.0 Ensembl178,944,040 - 78,968,329 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096009   ⟹   ENSRNOP00000081383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,690,208 - 77,714,456 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096185   ⟹   ENSRNOP00000079064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,690,208 - 77,714,456 (-)Ensembl
RefSeq Acc Id: NM_031729   ⟹   NP_113917
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,818,297 - 86,842,505 (-)NCBI
mRatBN7.2177,690,211 - 77,714,419 (-)NCBI
Rnor_6.0178,944,062 - 78,968,270 (-)NCBI
Rnor_5.0180,191,557 - 80,216,026 (-)NCBI
RGSC_v3.4177,345,194 - 77,369,417 (-)RGD
Celera172,175,254 - 72,199,561 (-)RGD
Sequence:
RefSeq Acc Id: NP_113917   ⟸   NM_031729
- UniProtKB: P53042 (UniProtKB/Swiss-Prot),   A6J8F0 (UniProtKB/TrEMBL),   Q68G16 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023078   ⟸   ENSRNOT00000023078
Ensembl Acc Id: ENSRNOP00000081383   ⟸   ENSRNOT00000096009
Ensembl Acc Id: ENSRNOP00000079064   ⟸   ENSRNOT00000096185
Protein Domains
Serine/threonine specific protein phosphatases

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P53042-F1-model_v2 AlphaFold P53042 1-499 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689748
Promoter ID:EPDNEW_R272
Type:initiation region
Name:Ppp5c_1
Description:protein phosphatase 5, catalytic subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0178,968,271 - 78,968,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68415 AgrOrtholog
BioCyc Gene G2FUF-60578 BioCyc
Ensembl Genes ENSRNOG00000016907 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055031841 UniProtKB/Swiss-Prot
  ENSRNOG00060022634 UniProtKB/Swiss-Prot
  ENSRNOG00065032929 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023078.6 UniProtKB/Swiss-Prot
  ENSRNOT00000096009.1 UniProtKB/TrEMBL
  ENSRNOT00000096185.1 UniProtKB/TrEMBL
  ENSRNOT00055055135 UniProtKB/Swiss-Prot
  ENSRNOT00060039433 UniProtKB/Swiss-Prot
  ENSRNOT00065056658 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.60.21.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7126555 IMAGE-MGC_LOAD
InterPro Calcineurin-like_PHP_ApaH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PP5_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPP_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPAP3 UniProtKB/TrEMBL
  Ser/Thr-sp_prot-phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93338 IMAGE-MGC_LOAD
NCBI Gene 65179 ENTREZGENE
PANTHER PTHR45668:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA POLYMERASE II-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  RNA POLYMERASE II-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Metallophos UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPP5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppp5c PhenoGen
PIRSF PPPtase_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS STPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SER_THR_PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016907 RatGTEx
  ENSRNOG00055031841 RatGTEx
  ENSRNOG00060022634 RatGTEx
  ENSRNOG00065032929 RatGTEx
SMART PP2Ac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC217088
UniProt A0A8I5ZM93_RAT UniProtKB/TrEMBL
  A0A8I5ZS45_RAT UniProtKB/TrEMBL
  A6J8F0 ENTREZGENE, UniProtKB/TrEMBL
  A6J8F1_RAT UniProtKB/TrEMBL
  A6J8F2_RAT UniProtKB/TrEMBL
  P53042 ENTREZGENE, UniProtKB/Swiss-Prot
  Q68G16 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ppp5c  protein phosphatase 5, catalytic subunit      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference