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Gene: Zim1 (zinc finger, imprinted 1) Rattus norvegicus

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Symbol:

Zim1

Name:

zinc finger, imprinted 1

RGD ID:

1310930

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in actin cytoskeleton and nucleoplasm. Predicted to be active in nucleus. Orthologous to human ZNF74 (zinc finger protein 74); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC308322

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF74 (zinc finger protein 74)	HGNC	Ensembl
Mus musculus (house mouse):	Gm14305 (predicted gene 14305)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf333 (zinc finger protein 333)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF333 (zinc finger protein 333)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF333 (zinc finger protein 333)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf333 (zinc finger protein 333)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF74 (zinc finger protein 74)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF74 (zinc finger protein 74)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf74 (zinc finger protein 74)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF132 (zinc finger protein 132)	HGNC	PhylomeDB
Homo sapiens (human):	ZNF333 (zinc finger protein 333)	HGNC	PhylomeDB
Alliance orthologs ³
Mus musculus (house mouse):	Zim1 (zinc finger, imprinted 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF74 (zinc finger protein 74)	Alliance	DIOPT (HGNC)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	76,165,208 - 76,186,843 (+)	NCBI		GRCr8
mRatBN7.2	1	67,132,076 - 67,157,843 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	67,132,147 - 67,153,761 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	72,483,445 - 72,505,084 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	81,120,515 - 81,142,154 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,314,851 - 74,336,480 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	70,244,828 - 70,268,289 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	70,253,650 - 70,266,809 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,637,534 - 71,659,128 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	65,535,900 - 65,557,221 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	65,622,491 - 65,634,147 (+)	NCBI
Celera	1	64,884,404 - 64,905,910 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zim1	Rat	autism spectrum disorder		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:25741868\|PMID:27569545
Zim1	Rat	autistic disorder		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311
Zim1	Rat	chromosome 22q11.2 deletion syndrome, distal		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Chromosome 22q11.2 deletion syndrome, distal	ClinVar	PMID:31690835
Zim1	Rat	chromosome 22q11.2 microduplication syndrome		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Chromosome 22q11.2 microduplication syndrome	ClinVar	PMID:25741868\|PMID:31690835
Zim1	Rat	DiGeorge syndrome		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: 22q11.2 deletion syndrome \| ClinVar Annotator: match by term: DiGeorge more ...	ClinVar	PMID:21921585\|PMID:24826987\|PMID:25205790\|PMID:25516202\|PMID:25860641\|PMID:26805781\|PMID:26805782\|PMID:28492532\|PMID:29500247\|PMID:30245509\|PMID:31690835\|PMID:32581362
Zim1	Rat	epilepsy		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Epilepsy	ClinVar
Zim1	Rat	hemorrhagic disease		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Abnormal bleeding	ClinVar	PMID:25741868\|PMID:31064749
Zim1	Rat	intellectual disability		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar
Zim1	Rat	megacolon		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106
Zim1	Rat	Neurodevelopmental Disorders		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Zim1	Rat	primary immunodeficiency disease		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Inherited Immunodeficiency Diseases	ClinVar	PMID:25741868
Zim1	Rat	schizophrenia		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106\|PMID:30208311
Zim1	Rat	velocardiofacial syndrome		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: 22q11.2 deletion syndrome \| ClinVar Annotator: match by term: Velocardiofacial more ...	ClinVar	PMID:25741868
Zim1	Rat	Venous Thrombosis		ISO	RGD:1353341	8554872	ClinVar Annotator: match by term: Deep venous thrombosis	ClinVar	PMID:25741868\|PMID:31064749

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zim1	Rat	(+)-catechin	multiple interactions	ISO	RGD:1353341	6480464	[Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of ZNF74 mRNA	CTD	PMID:24763279
Zim1	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of ZIM1 mRNA	CTD	PMID:29097150
Zim1	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of ZIM1 mRNA	CTD	PMID:33387578
Zim1	Rat	acrolein	multiple interactions	ISO	RGD:1353341	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ...	CTD	PMID:32699268
Zim1	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of ZIM1 mRNA	CTD	PMID:28959563
Zim1	Rat	aflatoxin B1	increases expression	ISO	RGD:1353341	6480464	Aflatoxin B1 results in increased expression of ZNF74 mRNA	CTD	PMID:22100608
Zim1	Rat	alpha-pinene	multiple interactions	ISO	RGD:1353341	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ...	CTD	PMID:32699268
Zim1	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of ZIM1 mRNA	CTD	PMID:35163327
Zim1	Rat	aristolochic acid A	increases expression	ISO	RGD:1353341	6480464	aristolochic acid I results in increased expression of ZNF74 mRNA	CTD	PMID:33212167
Zim1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ZIM1 mRNA	CTD	PMID:29097150
Zim1	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of ZIM1 gene	CTD	PMID:28505145
Zim1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ZIM1 mRNA	CTD	PMID:25181051\|PMID:30816183\|PMID:32528016\|PMID:34947998
Zim1	Rat	cadmium dichloride	decreases expression	ISO	RGD:1353341	6480464	Cadmium Chloride results in decreased expression of ZNF74 mRNA	CTD	PMID:38568856
Zim1	Rat	cisplatin	multiple interactions	ISO	RGD:1353341	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of ZNF74 mRNA	CTD	PMID:27392435
Zim1	Rat	copper atom	increases expression	EXP		6480464	Copper deficiency results in increased expression of ZIM1 mRNA	CTD	PMID:26033743
Zim1	Rat	copper(0)	increases expression	EXP		6480464	Copper deficiency results in increased expression of ZIM1 mRNA	CTD	PMID:26033743
Zim1	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1353341	6480464	di-n-butylphosphoric acid affects the expression of ZNF74 mRNA	CTD	PMID:37042841
Zim1	Rat	dorsomorphin	multiple interactions	ISO	RGD:1353341	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Zim1	Rat	doxorubicin	decreases expression	ISO	RGD:1353341	6480464	Doxorubicin results in decreased expression of ZNF74 mRNA	CTD	PMID:29803840
Zim1	Rat	N-Nitrosopyrrolidine	increases expression	ISO	RGD:1353341	6480464	N-Nitrosopyrrolidine results in increased expression of ZNF74 mRNA	CTD	PMID:32234424
Zim1	Rat	ozone	multiple interactions	ISO	RGD:1353341	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ...	CTD	PMID:32699268
Zim1	Rat	perfluorooctanoic acid	decreases expression	EXP		6480464	perfluorooctanoic acid results in decreased expression of ZIM1 mRNA	CTD	PMID:35163327
Zim1	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of ZIM1 mRNA	CTD	PMID:35163327
Zim1	Rat	SB 431542	multiple interactions	ISO	RGD:1353341	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Zim1	Rat	temozolomide	increases expression	ISO	RGD:1353341	6480464	Temozolomide results in increased expression of ZNF74 mRNA	CTD	PMID:31758290
Zim1	Rat	titanium dioxide	increases methylation	ISO	RGD:1353341	6480464	titanium dioxide results in increased methylation of ZNF74 gene	CTD	PMID:34973136
Zim1	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of ZIM1 mRNA	CTD	PMID:33387578
Zim1	Rat	triphenyl phosphate	affects expression	ISO	RGD:1353341	6480464	triphenyl phosphate affects the expression of ZNF74 mRNA	CTD	PMID:37042841
Zim1	Rat	valproic acid	affects expression	ISO	RGD:1353341	6480464	Valproic Acid affects the expression of ZNF74 mRNA	CTD	PMID:25979313
Zim1	Rat	valproic acid	decreases expression	ISO	RGD:1353341	6480464	Valproic Acid results in decreased expression of ZNF74 mRNA	CTD	PMID:23179753\|PMID:26272509\|PMID:28001369
Zim1	Rat	valproic acid	increases methylation	ISO	RGD:1353341	6480464	Valproic Acid results in increased methylation of ZNF74 gene	CTD	PMID:28853863\|PMID:29154799\|PMID:29201983
Zim1	Rat	valproic acid	multiple interactions	ISO	RGD:1353341	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Zim1	Rat	vorinostat	decreases expression	ISO	RGD:1353341	6480464	vorinostat results in decreased expression of ZNF74 mRNA	CTD	PMID:27188386
Zim1	Rat	zoledronic acid	increases expression	ISO	RGD:1353341	6480464	zoledronic acid results in increased expression of ZNF74 mRNA	CTD	PMID:20977926

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zim1	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	ARBA:ARBA00027996	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Zim1	Rat	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR001909\|InterPro:IPR036051	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Zim1	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:1351476\|MGI:1916754\|MGI:2142347\|MGI:2389445\|MGI:3044162\|PANTHER:PTN001225435\|RGD:2967\|RGD:2985\|UniProtKB:P52737\|UniProtKB:P52738\|UniProtKB:Q96CS4\|UniProtKB:Q96RE9\|UniProtKB:Q9HCX3	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zim1	Rat	actin cytoskeleton	located_in	ISO	RGD:1353341\|UniProtKB:Q16587-1\|UniProtKB:Q16587-3	1624291		RGD	GO_REF:0000052
Zim1	Rat	nucleoplasm	located_in	ISO	RGD:1353341\|UniProtKB:Q16587-1\|UniProtKB:Q16587-3	1624291		RGD	GO_REF:0000052
Zim1	Rat	nucleus	is_active_in	IBA	MGI:105921\|MGI:1328322\|MGI:1353621\|MGI:1916754\|MGI:2142347\|MGI:2143362\|MGI:2389445\|MGI:2444763\|MGI:3040700\|MGI:99206\|PANTHER:PTN001225435\|UniProtKB:O60765\|UniProtKB:P17014\|UniProtKB:P17020\|UniProtKB:P17032\|UniProtKB:Q09FC8\|UniProtKB:Q15072\|UniProtKB:Q16587\|UniProtKB:Q3ZCT1\|UniProtKB:Q5FWF6\|UniProtKB:Q6ECI4\|UniProtKB:Q7Z3V5\|UniProtKB:Q86Y25\|UniProtKB:Q8IZ26\|UniProtKB:Q8N720\|UniProtKB:Q8NDQ6\|UniProtKB:Q8TF45\|UniProtKB:Q8WV37\|UniProtKB:Q96CS4\|UniProtKB:Q96RE9\|UniProtKB:Q9BX82\|UniProtKB:Q9ULD5\|UniProtKB:Q9Y2P7	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zim1	Rat	nucleus	located_in	IEA	ARBA:ARBA00026330	1600115	GO_REF:0000117	UniProt	GO_REF:0000117

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zim1	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	PANTHER:PTN001225435\|UniProtKB:P35789\|UniProtKB:P52738\|UniProtKB:Q86Y25\|UniProtKB:Q96RE9	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zim1	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	ARBA:ARBA00029016	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Zim1	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Zim1	Rat	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:1916754\|PANTHER:PTN001225435	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zim1	Rat	transcription cis-regulatory region binding	enables	IEA	ARBA:ARBA00028970	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Zim1	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:22871113

Zim1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	76,165,208 - 76,186,843 (+)	NCBI		GRCr8
mRatBN7.2	1	67,132,076 - 67,157,843 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	67,132,147 - 67,153,761 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	72,483,445 - 72,505,084 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	81,120,515 - 81,142,154 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	74,314,851 - 74,336,480 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	70,244,828 - 70,268,289 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	70,253,650 - 70,266,809 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,637,534 - 71,659,128 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	65,535,900 - 65,557,221 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	65,622,491 - 65,634,147 (+)	NCBI
Celera	1	64,884,404 - 64,905,910 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

ZNF74
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	20,394,151 - 20,408,455 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	20,394,115 - 20,408,461 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	20,748,441 - 20,762,745 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	19,078,480 - 19,092,752 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	19,073,031 - 19,086,524	NCBI
Celera	22	4,235,241 - 4,249,494 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	4,012,499 - 4,026,828 (+)	NCBI		HuRef
CHM1_1	22	20,748,700 - 20,763,020 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	20,798,473 - 20,812,756 (+)	NCBI		T2T-CHM13v2.0

Gm14305
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	176,400,146 - 176,413,606 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	176,400,121 - 176,413,606 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	176,708,353 - 176,721,813 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	176,708,328 - 176,721,813 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	176,493,062 - 176,506,522 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	176,493,049 - 176,508,509 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	2	H4	NCBI
cM Map	2	99.02	NCBI

Znf333
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,661,089 - 31,686,000 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	31,663,213 - 31,687,372 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF333
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	19,604,212 - 19,634,802 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	18,621,158 - 18,650,501 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	14,237,791 - 14,268,376 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	15,098,084 - 15,127,985 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	15,101,366 - 15,143,096 (+)	Ensembl	panpan1.1		panPan2

ZNF333
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	47,981,662 - 48,003,802 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	47,982,076 - 47,995,620 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	47,856,662 - 47,879,110 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	48,495,230 - 48,517,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	48,493,003 - 48,517,706 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	47,711,178 - 47,733,680 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	48,135,340 - 48,157,626 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	48,380,171 - 48,402,448 (-)	NCBI		UU_Cfam_GSD_1.0

Znf333
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,177,873 - 207,196,488 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936659	3,158,389 - 3,177,784 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF74
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	50,840,510 - 50,869,489 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	50,840,500 - 50,869,945 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	54,475,580 - 54,511,518 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF74
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	5,302,966 - 5,318,084 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666085	1,617,354 - 1,633,233 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf74
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624945	356,794 - 367,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zim1
97 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	648
Count of miRNA genes:	277
Interacting mature miRNAs:	334
Transcripts:	ENSRNOT00000020416
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

UniSTS:532162

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	67,146,751 - 67,147,448 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	70,259,512 - 70,260,208	NCBI	Rnor6.0
Rnor_5.0	1	71,651,931 - 71,652,627	UniSTS	Rnor5.0
Celera	1	64,898,937 - 64,899,633	UniSTS
Cytogenetic Map	1	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	11	49	113	86	85	54	17	54	6	203	89	93	45	58	31


RefSeq Transcripts	NM_001107473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020416 ⟹ ENSRNOP00000020416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	67,132,147 - 67,153,761 (+)	Ensembl
Rnor_6.0 Ensembl	1	70,260,041 - 70,266,809 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087668 ⟹ ENSRNOP00000075231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	70,253,650 - 70,265,524 (+)	Ensembl

RefSeq Acc Id:

NM_001107473 ⟹ NP_001100943

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	76,165,208 - 76,186,843 (+)	NCBI
mRatBN7.2	1	67,132,124 - 67,153,761 (+)	NCBI
Rnor_6.0	1	70,244,884 - 70,266,709 (+)	NCBI
Rnor_5.0	1	71,637,534 - 71,659,128 (+)	NCBI
RGSC_v3.4	1	65,535,900 - 65,557,221 (+)	RGD
Celera	1	64,884,404 - 64,905,910 (+)	RGD

Sequence:

show sequence

GCGGCATTCCACTCCGGGTGACCGCTGGCTGCGGTGCCTGGAGGCGAGTGCGGCTGGAGAACCGAGCGCGAGGATTAAAGGTCTTTGGACAACTTGCAAGAGTCCGTTCTCTCCTACTATGTGGGTCC
CAGCGATGGAACTCGGGTTGTAAGGTTTGGCAGCAATCGCCTTTACCAGCTGAGCCACCTAGCTGGTCCCAGACTAGGATTGTTCCCTGTGCCCACAGATAGGACTGTCACAAATGCTGGCTCCAGCT
CCGGGGGATCCAACACCCTCGGTAGGAACATGGAGTCTGAGGACATTTCATCGCCTGCCTGAGGTCACCGAGCTGTAGAGCTAAGGATTTAAACCCAGACTGTCTGGCTCCATACTCCTAGTGCTCCT
CCTTATAACTCATGCAGTATTTCGTTCTCTCACCATGAAGAGAAAGAGTGTCTCAGAGGTGAAGACTACAGCCCCAGTTAATGAAGCCTTACCTTCACCAAATCCTGATCAGACACCAAACCAGCTCT
CTGAAAAGAAGCGAAGAATTCCAACCACATCTTTGCCAACCTGGTACAAGGAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCTCAGAAGGAC
CTGTACAAGGATGTGATGCTGGAGAACTACGGGAACCTGATCTCTGTGGAATATTATATTTTTAAGCCAAAGTTGATCACCAGATTGGAGCAAGGAATTGACCTTTTTGCCAAAGAGAATGATACTCC
TGGAGACCCCCAGCAAGGTGAGGCGGGAGTCAGCAGAAGTGACACCTCTGCAGGGAAGAAGACGGGGAATAATTCCACAAAGGCAGAAACCCGGAAGCCAGATAACTCTAAGAACGTGTCACAGGAGA
AGCTGAAGAAGGCAGATCAAGGGGGTGGTTCCCAGAATTTGAGAGCAGAAAAGACCTCAAAAAGTGATGACAGGCCATCTCAAAATAAGGAGAAGAGTGACTCAACTTCGACTACAGAAGCAGGCAAA
ACCACCAATCCTGGCAATCAGGAGAATGAATCTGCAGCCCCGGGGACATCTTCGAGTCAAACACCATCAACTACAGCACCACAGAGCACTCCTCCAGAAAAGTCGACATCAGGGAAAGATGGTCAAGG
AAAATCACCTAACACCAGCAGTTCCACAAACCCAAAGCGCAAGCCTGCCCGACAAGGTAAAAACCACTTTAAATGCAAGGAATGTGGGAAAACCTTCAACCAGACCCTCCACCTCGTGGAGCATGAGC
GAATCCACACGGGAGAGAAACCCCACAAGTGCGACACGTGCGGCAAATCTTTCCGGCACCTCTCCTACTTCCTCACACACTACCGAATTCACACGGGCGTGAGACCATACAAGTGTAAGGAGTGTGGG
AAAGCCTTCAACAGCAGCTCCACTCTCAACAATCATTGCAGGATCCACTCAGGCGAGAAACCCTTCAAATGCGACGAGTGTGGGAAAACCTTCAAGCAGAGCACGAAGCTCACCCGTCACCAACGGAT
TCACACCGGGGAGAAACCCTACAAGTGTGGAGAGTGTAACAAGTGCTTTGGCCGCAGCTCGTCCCTGAGGGAGCACAAGAGGATTCATACCGGAGAGAAGCCATACCGCTGTCAGGTGTGTGGGAAAA
CCTTCAGGGTCAACTCACATCTTTCAGAGCATCAGCGGCTCCATTTAAAGGTGAAGCCCTACAAGTGTGATAAGTGCGGGAAGCACTTCCGAAACAGCTCGTACTTGTCGGAACACAAGCAGATCCAT
GTGCCCGGGGCCCGAGTGGACTGCCCAGAATGTGGGAAAGTCTTCGCTTGCAAAGTAGCCCTTCTCAAGCACCAGAAGAGACACGAGGCGAACTCCAGGTATCGGTGCAAGGGATGTGGAAAGACTTT
TAGGTGTAAGTCAAGCATCCAAAGGCATGAGAGGCTGCACGCTGGGGAGAAACCTTTTGTGTGCACTAAGTGTGACAAAGGTTTCACTGACAAAACTACACTGAATAATCACTTGAAAATCCACTCTG
GAGATAGGCCGGATCCATGTGCCCAGTGCGGGAGAACCTTTAAAAAACTGGCTACCCTGTTGATTCACCAGAAAAAGCATAATAAGAAGAAACCCACAGATGAATAAAAGACCTTTCACCAGAACTCA
CATTTGGGTCTTTGGGACAAAGTTAAGAGAAACGACATACGTGTACAGTTCCTCCATTTCTTAGTAGTTGTTTTTAAGTAAGCCGGTAGTTTTCTAGAAATGACTGTTTTTAACCCCTCCCCCTACTT
CGAGCATTTGTGCAATATAAACAAACATTTTGCTGTTGTTACTATTCCAACAGACAGGTACTACCATCAACTGCATCTGTGGATAGAGGCAAAGGATCCACAAATACCCCACAATGTACTAAACAGAC
TCCCTTGCCTTCCAGCAACTAAGGAAAATGTGGCTGGCATTCAGATTTGAGATGAAATTCAGGTAGAGTTTTCTCTGCCAGCCACCACAGTAACCACTAACGAGGTATGGCCATTTAAATATCAAAAT
GAGGTAAACATTTAAATGCAAACACTGATATGATGAATCATTGATATTCCCAATCCTCAATGGCCAGTGAACCTCGCTGAGGTTCGACATCTTCGACAGTTAACGTTTTCAACACCATGGAAGATTCT
GTTCAGAACTGATCTTAATGAGCAACAATTCTTTCATGGGATGACCCCGAGGCAAACAGGACACAGCTTTGTGACACTGAATCTGTGCTTTATTTTATTTTATTTTATTTTATTTTAACAGCGGAATG
TAGCATTTTGTAAGGTTTGTGAATGTTCTGGAGCCTGTGATATTTGGAGCTCTGGTTGGCCGGTGCTCCACCCGCAGGACTCCTACCCCATGTGTTCAGTAGGTTACTAATAACGTCGTTGATAACTG
TGAGCATTTGTTGATCGCTATCTACCTATCAAGTATGGTGCTGAACTCTTTATGTGAATTGGCAGAGCTAATTTTCACCAGAGTCCTATGAGATAAGAACTGTTATGTACCTAACTTTCTGTTGAGAA
AACCAACACTTTTTGTTCTCCTCTTTTTCTTCCTCTTCTTCCTCCTCCTCCTTTCTCTTCTTCTTTGATTATTTCTATTCTTTTTCTTTTATTCTTATTCTCCCCAAAGGACTCCTACCTCCATTGTG
CCTTGGGCAGAATGATCAGTAGGTTATTAACAGTTATCACTGATACATTTGAGTGTTTATTGATGTCTTTCTACCTGTCAAATATGGTGCCGAAATCTTTACATGAACTATATCAGTTAATCAATCCC
ACCAGTCATATG

hide sequence


Protein RefSeqs	NP_001100943	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83189	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020416
	ENSRNOP00000020416.5

RefSeq Acc Id:

NP_001100943 ⟸ NM_001107473

- UniProtKB:

A0A0G2KA26 (UniProtKB/TrEMBL), D3ZYW5 (UniProtKB/TrEMBL), A6KS64 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKRKSVSEVKTTAPVNEALPSPNPDQTPNQLSEKKRRIPTTSLPTWYKEPVIFKDVAVYFSQKEWQLLEPAQKDLYKDVMLENYGNLISVEYYIFKPKLITRLEQGIDLFAKENDTPGDPQQGEAGVS
RSDTSAGKKTGNNSTKAETRKPDNSKNVSQEKLKKADQGGGSQNLRAEKTSKSDDRPSQNKEKSDSTSTTEAGKTTNPGNQENESAAPGTSSSQTPSTTAPQSTPPEKSTSGKDGQGKSPNTSSSTNP
KRKPARQGKNHFKCKECGKTFNQTLHLVEHERIHTGEKPHKCDTCGKSFRHLSYFLTHYRIHTGVRPYKCKECGKAFNSSSTLNNHCRIHSGEKPFKCDECGKTFKQSTKLTRHQRIHTGEKPYKCGE
CNKCFGRSSSLREHKRIHTGEKPYRCQVCGKTFRVNSHLSEHQRLHLKVKPYKCDKCGKHFRNSSYLSEHKQIHVPGARVDCPECGKVFACKVALLKHQKRHEANSRYRCKGCGKTFRCKSSIQRHER
LHAGEKPFVCTKCDKGFTDKTTLNNHLKIHSGDRPDPCAQCGRTFKKLATLLIHQKKHNKKKPTDE

hide sequence

Ensembl Acc Id:

ENSRNOP00000075231 ⟸ ENSRNOT00000087668

Ensembl Acc Id:

ENSRNOP00000020416 ⟸ ENSRNOT00000020416

Protein Domains

C2H2-type KRAB

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KA26-F1-model_v2	AlphaFold	A0A0G2KA26	1-578	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13689686

Promoter ID:

EPDNEW_R210

Type:

single initiation site

Name:

Zim1_1

Description:

zinc finger, imprinted 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	70,253,638 - 70,253,698	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-60941	BioCyc
Ensembl Genes	ENSRNOG00000015071	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020416	ENTREZGENE
	ENSRNOT00000020416.5	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	GLI_C2H2-zinc-finger	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:308322	UniProtKB/TrEMBL
NCBI Gene	308322	ENTREZGENE
PANTHER	C2H2-TYPE DOMAIN-CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZIC AND GLI	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
PhenoGen	Zim1	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015071	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2KA26	ENTREZGENE
	A6KS64	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYW5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2KA26	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zim1	zinc finger, imprinted 1	Zim1_predicted	zinc finger, imprinted 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zim1_predicted	zinc finger, imprinted 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar