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Gene: Fam120b (family with sequence similarity 120 member B) Rattus norvegicus

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Symbol:

Fam120b

Name:

family with sequence similarity 120 member B

RGD ID:

1310304

Description:

Predicted to be involved in fat cell differentiation and peroxisome proliferator activated receptor signaling pathway. Predicted to be active in nucleus. Orthologous to human FAM120B (family with sequence similarity 120 member B); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

constitutive coactivator of peroxisome proliferator-activated receptor gamma; family with sequence similarity 120B; LOC308218; RGD1310304; similar to KIAA1838 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	64,993,104 - 65,058,160 (+)	NCBI		GRCr8
mRatBN7.2	1	56,320,015 - 56,385,064 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	56,339,129 - 56,385,061 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	61,191,163 - 61,237,363 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	69,854,662 - 69,900,910 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	63,101,134 - 63,147,334 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	57,345,559 - 57,392,114 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	57,345,577 - 57,392,113 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	242,134,623 - 242,181,177 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	54,267,141 - 54,311,423 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	54,270,090 - 54,316,002 (+)	NCBI
Celera	1	52,548,278 - 52,593,638 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120b	Rat	amenorrhea		ISO	RGD:1321130	8554872	ClinVar Annotator: match by term: Primary amenorrhea	ClinVar	PMID:21681106

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120b	Rat	1,2-dichloroethane	decreases expression	ISO	RGD:1321131	6480464	ethylene dichloride results in decreased expression of FAM120B mRNA	CTD	PMID:28960355
Fam120b	Rat	1,2-dimethylhydrazine	decreases expression	ISO	RGD:1321131	6480464	1,2-Dimethylhydrazine results in decreased expression of FAM120B mRNA	CTD	PMID:22206623
Fam120b	Rat	17alpha-ethynylestradiol	affects expression	ISO	RGD:1321131	6480464	Ethinyl Estradiol affects the expression of FAM120B mRNA	CTD	PMID:17555576
Fam120b	Rat	17beta-estradiol	decreases expression	ISO	RGD:1321131	6480464	Estradiol results in decreased expression of FAM120B mRNA	CTD	PMID:39298647
Fam120b	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1321131	6480464	Tetrachlorodibenzodioxin affects the expression of FAM120B mRNA	CTD	PMID:21570461
Fam120b	Rat	2-hydroxypropanoic acid	decreases expression	ISO	RGD:1321130	6480464	Lactic Acid results in decreased expression of FAM120B mRNA	CTD	PMID:30851411
Fam120b	Rat	2-methylcholine	affects expression	ISO	RGD:1321130	6480464	beta-methylcholine affects the expression of FAM120B mRNA	CTD	PMID:21179406
Fam120b	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1321130	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Fam120b	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	RGD:1321130	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] more ...	CTD	PMID:28628672
Fam120b	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1321131	6480464	bisphenol S results in decreased expression of FAM120B mRNA	CTD	PMID:39298647
Fam120b	Rat	5-aza-2'-deoxycytidine	affects expression	ISO	RGD:1321130	6480464	Decitabine affects the expression of FAM120B mRNA	CTD	PMID:23300844
Fam120b	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of FAM120B mRNA	CTD	PMID:30047161
Fam120b	Rat	aflatoxin B1	increases expression	ISO	RGD:1321131	6480464	Aflatoxin B1 results in increased expression of FAM120B mRNA	CTD	PMID:19770486
Fam120b	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1321130	6480464	Aflatoxin B1 results in decreased methylation of FAM120B gene	CTD	PMID:27153756
Fam120b	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of FAM120B mRNA	CTD	PMID:38685447
Fam120b	Rat	amitrole	increases expression	EXP		6480464	Amitrole results in increased expression of FAM120B mRNA	CTD	PMID:30047161
Fam120b	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1321131	6480464	Benzo(a)pyrene results in increased expression of FAM120B mRNA	CTD	PMID:22228805
Fam120b	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1321130	6480464	Benzo(a)pyrene results in increased methylation of FAM120B 5' UTR; Benzo(a)pyrene results in increased methylation of more ...	CTD	PMID:27901495
Fam120b	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1321130	6480464	Benzo(a)pyrene affects the methylation of FAM120B 3' UTR	CTD	PMID:27901495
Fam120b	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of FAM120B mRNA	CTD	PMID:25181051
Fam120b	Rat	bisphenol A	increases expression	ISO	RGD:1321131	6480464	bisphenol A results in increased expression of FAM120B mRNA	CTD	PMID:33221593
Fam120b	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of FAM120B mRNA	CTD	PMID:30816183\|PMID:32528016
Fam120b	Rat	bisphenol F	multiple interactions	ISO	RGD:1321130	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Fam120b	Rat	C60 fullerene	decreases expression	EXP		6480464	fullerene C60 results in decreased expression of FAM120B mRNA	CTD	PMID:19167457
Fam120b	Rat	carbon nanotube	decreases expression	ISO	RGD:1321131	6480464	Nanotubes, Carbon analog results in decreased expression of FAM120B mRNA	CTD	PMID:25554681
Fam120b	Rat	cisplatin	affects expression	ISO	RGD:1321130	6480464	Cisplatin affects the expression of FAM120B mRNA	CTD	PMID:23300844
Fam120b	Rat	clotrimazole	increases expression	EXP		6480464	Clotrimazole results in increased expression of FAM120B mRNA	CTD	PMID:30047161
Fam120b	Rat	curcumin	decreases expression	ISO	RGD:1321130	6480464	Curcumin results in decreased expression of FAM120B mRNA	CTD	PMID:17999991
Fam120b	Rat	dexamethasone	multiple interactions	ISO	RGD:1321130	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Fam120b	Rat	enzyme inhibitor	multiple interactions	ISO	RGD:1321130	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation more ...	CTD	PMID:23301498
Fam120b	Rat	epoxiconazole	decreases expression	ISO	RGD:1321131	6480464	epoxiconazole results in decreased expression of FAM120B mRNA	CTD	PMID:35436446
Fam120b	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of FAM120B mRNA	CTD	PMID:24793618
Fam120b	Rat	folic acid	decreases expression	ISO	RGD:1321131	6480464	Folic Acid results in decreased expression of FAM120B mRNA	CTD	PMID:25629700
Fam120b	Rat	furan	increases methylation	EXP		6480464	furan results in increased methylation of FAM120B gene	CTD	PMID:22079235
Fam120b	Rat	indometacin	multiple interactions	ISO	RGD:1321130	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Fam120b	Rat	ketamine	decreases expression	EXP		6480464	Ketamine results in decreased expression of FAM120B mRNA	CTD	PMID:20080153
Fam120b	Rat	methapyrilene	decreases expression	EXP		6480464	Methapyrilene results in decreased expression of FAM120B mRNA	CTD	PMID:30467583
Fam120b	Rat	methimazole	increases expression	EXP		6480464	Methimazole results in increased expression of FAM120B mRNA	CTD	PMID:30047161
Fam120b	Rat	methylmercury chloride	decreases expression	ISO	RGD:1321130	6480464	methylmercuric chloride results in decreased expression of FAM120B mRNA	CTD	PMID:28001369
Fam120b	Rat	paracetamol	affects expression	ISO	RGD:1321131	6480464	Acetaminophen affects the expression of FAM120B mRNA	CTD	PMID:17562736
Fam120b	Rat	paracetamol	increases expression	ISO	RGD:1321130	6480464	Acetaminophen results in increased expression of FAM120B mRNA	CTD	PMID:26690555
Fam120b	Rat	phenobarbital	multiple interactions	ISO	RGD:1321131	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of FAM120B mRNA]	CTD	PMID:19482888
Fam120b	Rat	phenobarbital	increases expression	ISO	RGD:1321131	6480464	Phenobarbital results in increased expression of FAM120B mRNA	CTD	PMID:19482888
Fam120b	Rat	pirinixic acid	decreases expression	ISO	RGD:1321131	6480464	pirinixic acid results in decreased expression of FAM120B mRNA	CTD	PMID:20813756
Fam120b	Rat	rac-lactic acid	decreases expression	ISO	RGD:1321130	6480464	Lactic Acid results in decreased expression of FAM120B mRNA	CTD	PMID:30851411
Fam120b	Rat	sodium arsenite	increases expression	ISO	RGD:1321130	6480464	sodium arsenite results in increased expression of FAM120B mRNA	CTD	PMID:38568856
Fam120b	Rat	sodium arsenite	decreases expression	ISO	RGD:1321130	6480464	sodium arsenite results in decreased expression of FAM120B protein	CTD	PMID:30528433
Fam120b	Rat	sulfadimethoxine	increases expression	EXP		6480464	Sulfadimethoxine results in increased expression of FAM120B mRNA	CTD	PMID:30047161
Fam120b	Rat	tamoxifen	affects expression	ISO	RGD:1321131	6480464	Tamoxifen affects the expression of FAM120B mRNA	CTD	PMID:17555576
Fam120b	Rat	trichostatin A	increases expression	ISO	RGD:1321130	6480464	trichostatin A results in increased expression of FAM120B mRNA	CTD	PMID:24935251
Fam120b	Rat	triphenyl phosphate	affects expression	ISO	RGD:1321130	6480464	triphenyl phosphate affects the expression of FAM120B mRNA	CTD	PMID:37042841
Fam120b	Rat	valproic acid	decreases methylation	ISO	RGD:1321130	6480464	Valproic Acid results in decreased methylation of FAM120B gene	CTD	PMID:29154799
Fam120b	Rat	valproic acid	increases expression	ISO	RGD:1321130	6480464	Valproic Acid results in increased expression of FAM120B mRNA	CTD	PMID:23179753\|PMID:24935251

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120b	Rat	fat cell differentiation	involved_in	IBA	MGI:1914794\|PANTHER:PTN008562362	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam120b	Rat	fat cell differentiation	acts_upstream_of_or_within	ISO	RGD:1321131	1624291	PR:P37238 PMID:17595322	RGD	PMID:17595322
Fam120b	Rat	peroxisome proliferator activated receptor signaling pathway	involved_in	IBA	MGI:1914794\|PANTHER:PTN008562362	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam120b	Rat	peroxisome proliferator activated receptor signaling pathway	acts_upstream_of_or_within	ISO	RGD:1321131	1624291	PR:P37238 PMID:17595322	RGD	PMID:17595322

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120b	Rat	nucleus	is_active_in	IBA	MGI:1914794\|PANTHER:PTN000410110	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Fam120b	Rat	nucleus	located_in	ISO	RGD:1321131	1624291	PMID:17595322	RGD	PMID:17595322

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120b	Rat	protein binding	enables	ISO	RGD:1321130	1624291	UniProtKB:Q12933 PMID:16189514, PMID:32296183	RGD	PMID:16189514\|PMID:32296183
Fam120b	Rat	protein binding	enables	ISO	RGD:1321131	1624291	PR:P19785\|PR:P28700\|PR:P37238 PMID:17595322	RGD	PMID:17595322

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:17595322

Fam120b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	64,993,104 - 65,058,160 (+)	NCBI		GRCr8
mRatBN7.2	1	56,320,015 - 56,385,064 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	56,339,129 - 56,385,061 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	61,191,163 - 61,237,363 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	69,854,662 - 69,900,910 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	63,101,134 - 63,147,334 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	57,345,559 - 57,392,114 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	57,345,577 - 57,392,113 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	242,134,623 - 242,181,177 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	54,267,141 - 54,311,423 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	54,270,090 - 54,316,002 (+)	NCBI
Celera	1	52,548,278 - 52,593,638 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

FAM120B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	170,290,703 - 170,407,067 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	170,290,703 - 170,407,067 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	170,599,791 - 170,716,155 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	170,457,769 - 170,556,162 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	170,533,475 - 170,631,868	NCBI
Celera	6	171,413,409 - 171,510,239 (+)	NCBI		Celera
Cytogenetic Map	6	q27	NCBI
HuRef	6	168,122,561 - 168,220,196 (+)	NCBI		HuRef
CHM1_1	6	170,878,064 - 170,976,125 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	171,649,394 - 171,778,062 (+)	NCBI		T2T-CHM13v2.0

Fam120b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	15,616,464 - 15,653,843 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	15,616,464 - 15,653,845 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	15,396,202 - 15,433,581 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	15,396,202 - 15,433,583 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	15,533,166 - 15,570,545 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	15,101,209 - 15,138,544 (+)	NCBI		MGSCv36	mm8
Celera	17	16,183,831 - 16,221,210 (+)	NCBI		Celera
Cytogenetic Map	17	A2	NCBI
cM Map	17	8.95	NCBI

Fam120b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	3,387,368 - 3,457,123 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	3,386,801 - 3,478,141 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM120B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	190,569,755 - 190,674,956 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	188,482,661 - 188,579,485 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	168,464,682 - 168,563,784 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	173,561,251 - 173,658,625 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	173,545,329 - 173,658,879 (+)	Ensembl	panpan1.1		panPan2

FAM120B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	72,292,419 - 72,377,839 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	72,306,154 - 72,381,786 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	72,050,495 - 72,140,451 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	73,272,398 - 73,362,935 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	73,272,442 - 73,362,921 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	72,546,237 - 72,636,153 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	72,368,052 - 72,458,269 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	72,758,788 - 72,849,190 (+)	NCBI		UU_Cfam_GSD_1.0

Fam120b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	151,299,865 - 151,369,419 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937098	145,094 - 212,301 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937098	144,870 - 212,620 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM120B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	96,218 - 186,769 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	121,143 - 186,783 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	228,756 - 268,387 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM120B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	97,827,304 - 97,912,176 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	97,829,758 - 97,912,116 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	69,830,694 - 69,918,827 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam120b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624850	6,165,175 - 6,253,695 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624850	6,156,155 - 6,253,609 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fam120b
253 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	817
Count of miRNA genes:	290
Interacting mature miRNAs:	358
Transcripts:	ENSRNOT00000002036
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	19333571	56983283	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

RH127980

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,384,604 - 56,384,785 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,391,655 - 57,391,835	NCBI	Rnor6.0
Rnor_5.0	1	242,180,718 - 242,180,898	UniSTS	Rnor5.0
RGSC_v3.4	1	54,312,600 - 54,312,780	UniSTS	RGSC3.4
Celera	1	52,593,179 - 52,593,359	UniSTS
RH 3.4 Map	1	659.7	UniSTS
Cytogenetic Map	1	q12	UniSTS

BF386519

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,383,292 - 56,383,447 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,390,211 - 57,390,365	NCBI	Rnor6.0
Rnor_5.0	1	242,179,274 - 242,179,428	UniSTS	Rnor5.0
RGSC_v3.4	1	54,311,288 - 54,311,442	UniSTS	RGSC3.4
Celera	1	52,591,868 - 52,592,022	UniSTS
RH 3.4 Map	1	673.4	UniSTS
Cytogenetic Map	1	q12	UniSTS

BE121297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	56,380,539 - 56,380,706 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	57,387,458 - 57,387,624	NCBI	Rnor6.0
Rnor_5.0	1	242,176,521 - 242,176,687	UniSTS	Rnor5.0
RGSC_v3.4	1	54,308,535 - 54,308,701	UniSTS	RGSC3.4
Celera	1	52,589,115 - 52,589,281	UniSTS
RH 3.4 Map	1	674.3	UniSTS
Cytogenetic Map	1	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001107466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY724515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB773328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY320722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000082790 ⟹ ENSRNOP00000074634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	56,339,129 - 56,379,476 (+)	Ensembl
Rnor_6.0 Ensembl	1	57,345,577 - 57,390,470 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084017 ⟹ ENSRNOP00000069852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	56,339,129 - 56,385,061 (+)	Ensembl
Rnor_6.0 Ensembl	1	57,345,683 - 57,392,113 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118789 ⟹ ENSRNOP00000083603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	56,339,129 - 56,385,061 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119393 ⟹ ENSRNOP00000084163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	56,339,171 - 56,383,431 (+)	Ensembl

RefSeq Acc Id:

NM_001107466 ⟹ NP_001100936

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,226 - 65,058,160 (+)	NCBI
mRatBN7.2	1	56,339,129 - 56,385,064 (+)	NCBI
Rnor_6.0	1	57,345,683 - 57,392,114 (+)	NCBI
Rnor_5.0	1	242,134,623 - 242,181,177 (+)	NCBI
RGSC_v3.4	1	54,267,141 - 54,311,423 (+)	RGD
Celera	1	52,548,278 - 52,593,638 (+)	NCBI

Sequence:

show sequence

AATAACGGAAGCGGAAGTGAGCACGCCGGAGACTGCGGGTCTGAAATCAGGTTGACGCATCTACAGACACTGACTGCTGTGCTCCTCTGGGTAGGCAAGGCTCCGGGATCGGCCCACGGCCTCTGCAG
TCCCACCTCCCTATCCGGCGCTCCTTCCAGCCTTAAATCCGCTATCCCCGCCGTGACCACGCCCCTCCGCGCCCTACGTCCTGGCCTCTCTGCATCCTGGCTGCTCTGCGTCCTGGCTGTTTCCCCGG
GGTAGAGGGGAGAGGCAGCCATCCTCCTGCTGAAGCGGGGTAGAGGCCTTTACTGAGCCCAGCTGAGGACCAGCGAGGTAGAGTCTCAGACTCTAGTAGCGGCTGGAGAACTGGTACCTGGGATTCAT
AAAATCCAATTATGGGTGTAAGAGGTTTGCAGGGGTTTGTGGGAAGTACCTGCCCACATATATGTACAACAGTCAATCTCCACGAGCTGGCAGAGAGTCACCGAGCCAAGTACCCTGGAAGTACGCCC
ACCATTGTGGTGGACGCCATGTGCTGTCTCCGATACTGGTACACAGCAGAGTCCTGGGTGTGCGGCGGCCAGTGGAGAGAATACTATTCGGCTTTGAGAGACTTCCTCGCGGCCTTCACATCTGCTGG
CATCAAGCTGATCTTTTTCTTTGACGGCACGGTGGAGCCGGGCAAGCGAGACGAGTGGGTAAAGCGAAGACTTAAAAACAACAGGGAGATATCCAGGATCTTCCACTATATCAAGTCAAAAAGAGAGC
AGCCAGGCAGGAACATGTTCTTCATCCCCTCCGGTCTGGCCATATTCACGCGGTTCGCCCTGAAGTCGTTGGGCCAGGAGACTTTCTGCTCATTGCAGGAGGCAGACTACGAGGTGGCTTCTTATGGC
CTGCAGCACAACTGCCTTGGGATCCTTGGGGAAGACACTGACTACTTAATTTATGACACTTGCCCCTACTTGTCAATTGGTGACCTCTGTCTGGAGAGTCTCCAAACCATCCTGCTGTGTCGAGAGAA
GCTCTGTGAGAGCCTGGGCCTCCGTGTGTCAGACCTCCCTCTGCTGGCCTGTCTACTTGGCAATGACATCACTCCAGAGGGCATGTTCGAAAGCTTTCGGTACAAGTGCTTGTCATCCTATGCTTCTG
TGAAAGAGAATGCAGGCAAAAAAGGAAATATTATCCTAGCCGTCTCCGACTATATCTCCAAAGTTCTTCATTTGTATCAAGGTGAGAAGAAGATCGAAGAGATGCTACCCTTGGGGCCAAACAAAGCT
CTCTTTTATAAAGGAGTAACATCGTACCTTTTGCCAGGGCAGAAATCTCCATGGTTAGTTCAAAAACCCAAAAGCATAATAACAGACAAGCAAATGGCGAGTTTAAACCCCGGATCCAAGCAAGAAGT
CCCCATGTGCATAGATCCTGAATTCAAGCAAGAAGTTCCTGTGTGCACTAATCCCGAGTCCATGCAAGAAGTTCCCATGTGTATGGACCCTGAACCCAACCAGGAAGCTTCCGTGTGCATGGATCGCG
AATCCAAGCCAGAGGTTCCCATGTGCACTGATCCTGAATCCAAGCCAGAGGTTCCCCTGTATACAAACCCAGAGAGCAAGCAAAAGTCACCTTCAGAAATAGACCCCAAGTGCAATCTAGAAGCACTC
ACGTGTACATACCCTGAAGTTAAACAAGAAGATGCCATGGATATGGAACCGGAAATAAAGCAAGCAACCATGGTTTCAGAGTCTGAAATCTTAAAGGTTGCCAGGATGCATCATGTCCACTCAGAAAG
CTACCTAGTGTACAACATTTTGAGCAGTGGAGAGATAGAGTGTAGTAACACCCTGGAGGACGAGCTGGACCAAGCCCTCCCAAGCCAAGCCTTCATCTACCGCCCAGTCCGGCAGCGGGTCTACTCAC
TCTTACTGGAGGACTGGAAAGACGGAGCCAGCACTGGTCCAGTGGTCAAGGAGTGGTTTGTGTACCCTGGTAACTCCCTGAAGCACCCAGACCTAGTCAGGCCTCTGCAGATGACCGTTCAAGGGGGA
ACGCCTAGCTTGGAAGTTTTGTGGCTGAGCCAAGAGCCAGCAGCCCAGGCCCGGCGCCTGGACACATTGCTAGCCTGCTTCAACCTTTCCTCCTCAAGAGAAGAGCTGCAATCCGTGGAGAGCCCGTT
GAGGGCGCTGTGCTGCCTCTTGATCTACCTGTTTGTCCAGGTGGACACTCTTTCCCTGGAAGATCTGCATGCATTTATCGCTCAGGCCTTGTGCCTCCAAGGAAAATCAACCTCCCAGCTTATGCACT
TACAGCTGGATTACATCAACTCCAGAGCTGTGCAGCTGGGGTCCCTCCTTGTCCGTGGCCTCACCACATTGGTACTAGTCAACAGTGCATGTGGCTTCCCTTGGACAACCAGCGACTTTATGCCCTGG
AATGTATTTGACGGCAAGCTTTTCCATCAGAAGTACCTGCAGTCTGAAAAAGGATATGGCGTGGAGACTCTTTTGGAACAAAATAGATCGTGGCTCACCACGTTCCACAACCTGAAGGCAGTGGTCTG
CAAGGCCTGCTCCAAGGAGAACCGACGAATTGTAGGCAGGATACATTGGAACTCTCATTACACAGGGAGGCAGGGGAGACAGGGCCACGGCTCCTACAGATCAGGCTCCACACATGGCCATTCTGGGC
AGTCATGGAGAGACCAGGGTTCAGGAGGCAGACAGCATGAGCATGACCACTGGAGAAGATACTAGGTGCTGTACAGGTAAAGTCCTCCCCAGCCCCTCAGTGAACCAGCAGATGCTCTGTCTTCATAG
CTGAGGGCCAAATAGTTAATGTGTCTCGTGGGCCAGCTTCCCAACCGGGATCCACCGACTTGTTTCAAGCTGTGTCTGCTTCTTCCAGAAGAGTGTGGGAAAAGGTTCAACGCCGGGACTCCGCCCTC
CTTCAAGGAGTGTTTAGAGTGGCATCACCCAGTCTCATCAGAGGGACAGTAACTGGGACCACACTTTAAAGGAAGGAAAGATTGCTTTTCAGTGGATTCTCCTGCACATACTGTAAAAAGATCCCATC
GGTTTGTTTCAGACGTTGCTCCTGACTCCCATGACCCAGAACACGAGACACTAACGTCAAGAATGCTCTTCTGACCTTAGCAGGAGTCTAATTCCAAACATTTGCTGACTATTAAATTGTGAAAATGT
TTCCTCAAATCATTGGTCTTTGAAATCATGATGTCTTCTTATTTTTCTGTTATTGTGAAAAGGAACCATGACCAAAGCGACTTACAAAAGAAAGCATTTAATTTAGGTCTTAGGGTTCCAGAGGGTGG
TAGAGCCTATGGCCATCGTGTTGGGGCTAGCCAACTGAGAATGGCTCAGGGTTTTGAAACTTTAAAGCCCACCCCCCCCCCCAGCAACACACCTCCATCAGCAAAGCCACGCCCCCTCCAGTAAGGCC
ACGCCTCCTAACCCTTTCCACCAACCAGAGACCAAGCTTTCAGACATACTAGCTTATGGGGCTATTCTCATTCAGACCACCATACATAATATCTAATAGCTATATGATCAGTCAGAAATTACTTTTTC
ATTAGAAAAATCTAGCAGAAATAAGCATTCATCTGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGGGCTTCCTAGGCAAGCGCTC
TACTACTGAGCTAAATCCCCAACCCCCTGTTTTTTTTCTTGATCCACAAAGTATTTGGATAGGAAAAAAAAAACCTAAATTCTTGCTTTCTTGTGGGAGAGTTGGTTCTGATTAGAGGAATGATGGCT
CAGTGGTTAAGAACAGTGGCAGCTCTTCCAGAGACCCAAGGTCTGATCCCCATCACCCACACGGTGGCTCACAACTGTAACTCCAGTTCCAGGGCAATCGAAAGCCTCTTCTGGTCTCTGTGAGCACT
AAGCACACAGTGATGCCCAGACATGCATACAGGAAAAACACCCCTAAAGATGAAATACATGTTAAAAAAAAAAGATTTTTAAAGAAGCAGAGTGGGTTACAGTAAGATCTTCTTTAAACTCTGAGGTT
CTTATCCATCTCCACTGGGGAAACAAGAGTAGCTGAGCCCTGTCCAGGGCCCTTACAGCCCTGCTCTATCTCTAGGGACACGCAGTTCCCTGAGGAGATGCAAGCTCACTGGAAGATGTGTCCTTTTC
GTGCTCCGGTCTTTAAGATTTTGATAAGCTTCTAAAATGTTCCTTGTCGTCTTTACAGTTTTGCAGACCACTGGCTCAGCCATGCTGTAGGAGCTCTTGGGTTTCTCCTTGAGATTCTTGTGTTTACC
AGAAGGGTACAGCCCCATCTCCCGCATTTGAGCATGCTTGTGTTTGTTCAGCCCCTTTCTGCTCCCGGAGGACTGAGCATAGTGTGTCCGGAGAGCTTGTACTGCTATGTCTGCTGCCTAGACTAGGA
ACTGGCTTTTCTGGTCCTTCCCTTGAACACCGTCTTCTTCCTGTCTGCTACTCTCTGACATCGCTGCCTTTAGGAGTTCTGTTTCCTTGCTGTTTACCTGTGTGACTGTGAATTAAGATTCTGATCTC
TTAGACTGAAAGTATATTTCCGTGAAAGTTGTTTTCCGTCACAGAAGCTGCATCCTGACTTGTCAATAAAGTGTGTATGTCAGTCACATTTAAATAAGTTTAAATAAGCCACTGTGTTGATGGAATAT
TAATCACATTTAGAACTTTTCCGGGGACAGCATTGTTTTCCAGTCAAGTCTTGTGATAGAATTTCCACATATCAATTTAAAATAAAAATACATTTTTAAACTCATAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_039110798 ⟹ XP_038966726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	64,993,104 - 65,058,158 (+)	NCBI
mRatBN7.2	1	56,320,015 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_039110803 ⟹ XP_038966731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,054 - 65,058,158 (+)	NCBI
mRatBN7.2	1	56,339,009 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_039110806 ⟹ XP_038966734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,051 - 65,056,320 (+)	NCBI
mRatBN7.2	1	56,339,010 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_039110811 ⟹ XP_038966739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,089 - 65,058,158 (+)	NCBI
mRatBN7.2	1	56,339,007 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_039110812 ⟹ XP_038966740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,089 - 65,058,158 (+)	NCBI
mRatBN7.2	1	56,339,009 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_039110817 ⟹ XP_038966745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,023,648 - 65,058,158 (+)	NCBI
mRatBN7.2	1	56,344,827 - 56,385,062 (+)	NCBI

RefSeq Acc Id:

XM_063288575 ⟹ XP_063144645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,098 - 65,058,158 (+)	NCBI

RefSeq Acc Id:

XM_063288585 ⟹ XP_063144655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,089 - 65,023,832 (+)	NCBI

RefSeq Acc Id:

XR_005504540

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	65,012,089 - 65,037,515 (+)	NCBI
mRatBN7.2	1	56,339,010 - 56,364,414 (+)	NCBI


Protein RefSeqs	NP_001100936	(Get FASTA)	NCBI Sequence Viewer
	XP_038966726	(Get FASTA)	NCBI Sequence Viewer
	XP_038966731	(Get FASTA)	NCBI Sequence Viewer
	XP_038966734	(Get FASTA)	NCBI Sequence Viewer
	XP_038966739	(Get FASTA)	NCBI Sequence Viewer
	XP_038966740	(Get FASTA)	NCBI Sequence Viewer
	XP_038966745	(Get FASTA)	NCBI Sequence Viewer
	XP_063144645	(Get FASTA)	NCBI Sequence Viewer
	XP_063144655	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99823	(Get FASTA)	NCBI Sequence Viewer
	EDL99824	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069852
	ENSRNOP00000069852.1
	ENSRNOP00000074634.2
	ENSRNOP00000083603
	ENSRNOP00000083603.1
	ENSRNOP00000084163.1
	ENSRNOP00000107565

RefSeq Acc Id:

NP_001100936 ⟸ NM_001107466

- UniProtKB:

D4AE88 (UniProtKB/TrEMBL), A6KB41 (UniProtKB/TrEMBL), A0A0G2K8J8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGVRGLQGFVGSTCPHICTTVNLHELAESHRAKYPGSTPTIVVDAMCCLRYWYTAESWVCGGQWREYYSALRDFLAAFTSAGIKLIFFFDGTVEPGKRDEWVKRRLKNNREISRIFHYIKSKREQPGR
NMFFIPSGLAIFTRFALKSLGQETFCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYLSIGDLCLESLQTILLCREKLCESLGLRVSDLPLLACLLGNDITPEGMFESFRYKCLSSYASVKEN
AGKKGNIILAVSDYISKVLHLYQGEKKIEEMLPLGPNKALFYKGVTSYLLPGQKSPWLVQKPKSIITDKQMASLNPGSKQEVPMCIDPEFKQEVPVCTNPESMQEVPMCMDPEPNQEASVCMDRESKP
EVPMCTDPESKPEVPLYTNPESKQKSPSEIDPKCNLEALTCTYPEVKQEDAMDMEPEIKQATMVSESEILKVARMHHVHSESYLVYNILSSGEIECSNTLEDELDQALPSQAFIYRPVRQRVYSLLLE
DWKDGASTGPVVKEWFVYPGNSLKHPDLVRPLQMTVQGGTPSLEVLWLSQEPAAQARRLDTLLACFNLSSSREELQSVESPLRALCCLLIYLFVQVDTLSLEDLHAFIAQALCLQGKSTSQLMHLQLD
YINSRAVQLGSLLVRGLTTLVLVNSACGFPWTTSDFMPWNVFDGKLFHQKYLQSEKGYGVETLLEQNRSWLTTFHNLKAVVCKACSKENRRIVGRIHWNSHYTGRQGRQGHGSYRSGSTHGHSGQSWR
DQGSGGRQHEHDHWRRY

hide sequence

Ensembl Acc Id:

ENSRNOP00000074634 ⟸ ENSRNOT00000082790

Ensembl Acc Id:

ENSRNOP00000069852 ⟸ ENSRNOT00000084017

RefSeq Acc Id:	XP_038966726 ⟸ XM_039110798
- Peptide Label:	isoform X1
- UniProtKB:	D4AE88 (UniProtKB/TrEMBL), A6KB41 (UniProtKB/TrEMBL), A0A0G2K8J8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966739 ⟸ XM_039110811
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZXF7 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AE88-F1-model_v2	AlphaFold	D4AE88	1-785	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13689643

Promoter ID:

EPDNEW_R168

Type:

initiation region

Name:

Fam120b_1

Description:

family with sequence similarity 120B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	57,345,731 - 57,345,791	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-61313	BioCyc
Ensembl Genes	ENSRNOG00000058790	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000082790.2	UniProtKB/TrEMBL
	ENSRNOT00000084017	ENTREZGENE
	ENSRNOT00000084017.2	UniProtKB/TrEMBL
	ENSRNOT00000118789	ENTREZGENE
	ENSRNOT00000118789.1	UniProtKB/TrEMBL
	ENSRNOT00000119393.1	UniProtKB/TrEMBL
	ENSRNOT00000133470	ENTREZGENE
Gene3D-CATH	5'-nuclease	UniProtKB/TrEMBL
InterPro	Coact_PPARg	UniProtKB/TrEMBL
	PIN_domain-like	UniProtKB/TrEMBL
KEGG Report	rno:308218	UniProtKB/TrEMBL
NCBI Gene	308218	ENTREZGENE
PANTHER	CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA	UniProtKB/TrEMBL
	PTHR15976	UniProtKB/TrEMBL
PhenoGen	Fam120b	PhenoGen
RatGTEx	ENSRNOG00000058790	RatGTEx
Superfamily-SCOP	SSF88723	UniProtKB/TrEMBL
UniProt	A0A0G2K8J8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXF7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A0B3	ENTREZGENE, UniProtKB/TrEMBL
	A6KB41	ENTREZGENE, UniProtKB/TrEMBL
	D4AE88	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-07-06	Fam120b	family with sequence similarity 120 member B	Fam120b	family with sequence similarity 120B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam120b	family with sequence similarity 120B	RGD1310304_predicted	similar to KIAA1838 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310304_predicted	similar to KIAA1838 protein (predicted)	LOC308218_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC308218_predicted	similar to KIAA1838 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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