Rps5 (ribosomal protein S5) - Rat Genome Database

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Gene: Rps5 (ribosomal protein S5) Rattus norvegicus
Analyze
Symbol: Rps5
Name: ribosomal protein S5
RGD ID: 3601
Description: Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in regulation of translational fidelity; ribosomal small subunit assembly; and translation. Part of cytosolic small ribosomal subunit. Orthologous to human RPS5 (ribosomal protein S5); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rps5-ps1   Rps5-ps2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2173,538,776 - 73,543,073 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl173,538,776 - 73,543,073 (+)Ensembl
Rnor_6.0165,660,470 - 65,664,767 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,660,470 - 65,664,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,471,608 - 66,475,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,828,981 - 72,833,277 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1172,907,117 - 72,911,635 (+)NCBI
Celera160,295,732 - 60,300,029 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, etal., Genome Res 1996 Sep;6(9):791-806.
3. The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72.
4. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. The primary structure of rat ribosomal protein S5. A ribosomal protein present in the rat genome in a single copy. Kuwano Y, etal., J Biol Chem 1992 Dec 15;267(35):25304-8.
8. Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling. Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
9. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Comprehensive gene review and curation RGD comprehensive gene curation
16. Expression of ribosomal protein S5 cloned gene during differentiation and apoptosis in murine erythroleukemia (MEL) cells. Vizirianakis IS, etal., Oncol Res 1999;11(9):409-19.
Additional References at PubMed
PMID:8706699   PMID:12477932   PMID:15883184   PMID:16854843   PMID:17901157   PMID:18464793   PMID:18809582   PMID:19946888   PMID:20458337   PMID:21423176   PMID:22658674   PMID:22681889  
PMID:23376485   PMID:23979707   PMID:24668691   PMID:25931508   PMID:31505169  


Genomics

Comparative Map Data
Rps5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2173,538,776 - 73,543,073 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl173,538,776 - 73,543,073 (+)Ensembl
Rnor_6.0165,660,470 - 65,664,767 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,660,470 - 65,664,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,471,608 - 66,475,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,828,981 - 72,833,277 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1172,907,117 - 72,911,635 (+)NCBI
Celera160,295,732 - 60,300,029 (-)NCBICelera
Cytogenetic Map1q12NCBI
RPS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,387,269 - 58,394,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1958,386,400 - 58,394,806 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,898,636 - 58,906,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,590,448 - 63,597,983 (+)NCBINCBI36hg18NCBI36
Build 341963,590,466 - 63,597,982NCBI
Celera1955,942,629 - 55,950,164 (+)NCBI
Cytogenetic Map19q13.43NCBI
HuRef1955,207,846 - 55,215,380 (+)NCBIHuRef
CHM1_11958,892,560 - 58,900,109 (+)NCBICHM1_1
T2T-CHM13v2.01961,483,659 - 61,491,195 (+)NCBI
Rps5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,656,223 - 12,660,613 (+)NCBIGRCm39mm39
GRCm39 Ensembl712,656,217 - 12,660,613 (+)Ensembl
GRCm38712,922,311 - 12,926,686 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,922,290 - 12,926,686 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,507,660 - 13,512,035 (+)NCBIGRCm37mm9NCBIm37
MGSCv36711,822,516 - 11,838,015 (+)NCBImm8
Celera710,547,262 - 10,551,638 (+)NCBICelera
Cytogenetic Map7A1NCBI
Rps5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,036,044 - 1,041,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,036,044 - 1,040,451 (+)NCBIChiLan1.0ChiLan1.0
RPS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11964,219,991 - 64,228,173 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,218,986 - 64,228,173 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01955,396,001 - 55,403,624 (+)NCBIMhudiblu_PPA_v0panPan3
RPS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,558,769 - 99,564,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,558,763 - 99,564,332 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,953,814 - 99,959,453 (-)NCBI
ROS_Cfam_1.01100,199,463 - 100,205,112 (-)NCBI
ROS_Cfam_1.0 Ensembl1100,199,459 - 100,205,037 (-)Ensembl
UMICH_Zoey_3.1199,844,961 - 99,850,599 (-)NCBI
UNSW_CanFamBas_1.0199,557,359 - 99,562,993 (-)NCBI
UU_Cfam_GSD_1.01100,312,457 - 100,318,097 (-)NCBI
Rps5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,104,320 - 218,109,406 (-)NCBI
SpeTri2.0NW_00493706210,007 - 15,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,921,635 - 62,974,354 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,967,955 - 62,974,353 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,686,364 - 57,692,212 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,662,539 - 50,670,204 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl650,663,431 - 50,670,230 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660453,961,962 - 3,969,821 (+)NCBIVero_WHO_p1.0
Rps5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624832177,463 - 184,373 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624832177,463 - 184,459 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127789  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,542,162 - 73,542,974 (-)MAPPERmRatBN7.2
Rnor_6.0165,660,569 - 65,661,380NCBIRnor6.0
Rnor_5.0166,471,707 - 66,472,518UniSTSRnor5.0
RGSC_v3.4172,832,368 - 72,833,179UniSTSRGSC3.4
Celera160,295,831 - 60,296,642UniSTS
RH 3.4 Map81260.6UniSTS
Cytogenetic Map1q21UniSTS
RH138527  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2173,542,820 - 73,543,045 (-)MAPPERmRatBN7.2
Rnor_6.0165,660,498 - 65,660,722NCBIRnor6.0
Rnor_5.0166,471,636 - 66,471,860UniSTSRnor5.0
RGSC_v3.4172,833,026 - 72,833,250UniSTSRGSC3.4
Celera160,295,760 - 60,295,984UniSTS
RH 3.4 Map1765.09UniSTS
Cytogenetic Map1q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:63
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000026528
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 2 15 14 8 14 10 14 27
Medium 1 41 42 27 11 27 8 11 64 21 14 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC158718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM052146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000026528   ⟹   ENSRNOP00000026528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl173,538,776 - 73,543,073 (+)Ensembl
Rnor_6.0 Ensembl165,660,470 - 65,664,767 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088367   ⟹   ENSRNOP00000072051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl173,538,776 - 73,543,063 (+)Ensembl
Rnor_6.0 Ensembl165,660,470 - 65,664,767 (-)Ensembl
RefSeq Acc Id: NM_001277243   ⟹   NP_001264172
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2173,538,776 - 73,543,073 (+)NCBI
Rnor_6.0165,660,470 - 65,664,767 (-)NCBI
Rnor_5.0166,471,608 - 66,475,905 (-)NCBI
Celera160,295,732 - 60,300,029 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001277244   ⟹   NP_001264173
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2173,538,776 - 73,543,073 (+)NCBI
Rnor_6.0165,660,470 - 65,664,767 (-)NCBI
Rnor_5.0166,471,608 - 66,475,905 (-)NCBI
Celera160,295,732 - 60,300,029 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001264173   ⟸   NM_001277244
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K200 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264172   ⟸   NM_001277243
- Peptide Label: isoform 1
- UniProtKB: B0BN81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000026528   ⟸   ENSRNOT00000026528
RefSeq Acc Id: ENSRNOP00000072051   ⟸   ENSRNOT00000088367
Protein Domains
Ribosomal_S7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24050-F1-model_v2 AlphaFold P24050 1-204 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689675
Promoter ID:EPDNEW_R200
Type:multiple initiation site
Name:Rps5_1
Description:ribosomal protein S5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0165,664,741 - 65,664,801EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3601 AgrOrtholog
BioCyc Gene G2FUF-60715 BioCyc
Ensembl Genes ENSRNOG00000019453 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026528 ENTREZGENE
  ENSRNOP00000026528.4 UniProtKB/TrEMBL
  ENSRNOP00000072051.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026528 ENTREZGENE
  ENSRNOT00000026528.8 UniProtKB/TrEMBL
  ENSRNOT00000088367.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.455.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9089281 IMAGE-MGC_LOAD
InterPro Ribosomal_S5/S7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5/S7_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S7_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S7_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S7_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25538 UniProtKB/TrEMBL
MGC_CLONE MGC:187862 IMAGE-MGC_LOAD
NCBI Gene 25538 ENTREZGENE
PANTHER PTHR11205 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps5 PhenoGen
PIRSF RPS7p_RPS7a_RPS5e_RPS7o UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47973 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs uS7_euk_arch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K200 ENTREZGENE, UniProtKB/TrEMBL
  B0BN81 ENTREZGENE, UniProtKB/TrEMBL
  P24050 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps5  ribosomal protein S5      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation expression level decreases upon induction of differentiation 724626