Vom1r-ps40 (vomeronasal 1 receptor pseudogene 40) - Rat Genome Database

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Gene: Vom1r-ps40 (vomeronasal 1 receptor pseudogene 40) Rattus norvegicus
Analyze
Symbol: Vom1r-ps40
Name: vomeronasal 1 receptor pseudogene 40
RGD ID: 2316432
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: vomeronasal 1 receptor Vom1r-ps40 pseudogene; vomeronasal 1 receptor, pseudogene 40
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,237,452 - 75,237,786 (-)NCBIGRCr8
mRatBN7.2166,322,073 - 66,322,407 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx171,769,701 - 71,770,035 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0180,192,654 - 80,192,988 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,525,911 - 73,526,245 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.0813,947,740 - 13,948,074 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera164,027,171 - 64,027,505 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:19952141  



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Variants in Vom1r-ps40
1 total Variants

1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 47 rows





RefSeq Transcripts NG_015570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60983 BioCyc
NCBI Gene 100312710 ENTREZGENE
PhenoGen Vom1r-ps40 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-01-20 Vom1r-ps40  vomeronasal 1 receptor pseudogene 40  Vom1r-ps40  vomeronasal 1 receptor, pseudogene 40  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-08 Vom1r-ps40  vomeronasal 1 receptor, pseudogene 40    vomeronasal 1 receptor Vom1r-ps40 pseudogene  Symbol and Name updated 2325755 APPROVED
2010-02-10 Vom1r-ps40  vomeronasal 1 receptor Vom1r-ps40 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL