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Gene: Hif3a (hypoxia inducible factor 3 subunit alpha) Rattus norvegicus
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Symbol: Hif3a
Name: hypoxia inducible factor 3 subunit alpha
Description: Exhibits DNA-binding transcription factor activity. Involved in positive regulation of transcription by RNA polymerase II. Localizes to the cytoplasm and nucleus. Biomarker of pulmonary hypertension. Orthologous to human HIF3A (hypoxia inducible factor 3 subunit alpha); PARTICIPATES IN hypoxia inducible factor pathway; INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: HIF-3 alpha; HIF-3-alpha; HIF3 alpha 1; HIF3-alpha; HIF3-alpha-1; hypoxia inducible factor 3 alpha; hypoxia inducible factor 3 alpha subunit; hypoxia inducible factor 3, alpha subunit; hypoxia inducible factor 3a; hypoxia-inducible factor 3 alpha; hypoxia-inducible factor 3-alpha; Inhibitory PAS (Per/Arnt/Sim) domain protein; Ipas; MOP7
Orthologs:
Homo sapiens (human) : HIF3A (hypoxia inducible factor 3 subunit alpha)  HGNC  Alliance
Mus musculus (house mouse) : Hif3a (hypoxia inducible factor 3, alpha subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hif3a (hypoxia inducible factor 3 subunit alpha)
Pan paniscus (bonobo/pygmy chimpanzee) : HIF3A (hypoxia inducible factor 3 subunit alpha)
Canis lupus familiaris (dog) : HIF3A (hypoxia inducible factor 3 subunit alpha)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hif3a (hypoxia inducible factor 3 subunit alpha)
Sus scrofa (pig) : HIF3A (hypoxia inducible factor 3 subunit alpha)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0178,976,318 - 78,997,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,976,318 - 78,997,869 (-)Ensembl
Rnor_5.0180,223,828 - 80,245,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,377,465 - 77,408,704 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,455,581 - 77,486,815 (-)NCBI
Celera172,207,606 - 72,229,353 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Hif3a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 70332
Created: 2002-03-15
Species: Rattus norvegicus
Last Modified: 2019-10-29
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.