Calm3 (calmodulin 3) - Rat Genome Database

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Gene: Calm3 (calmodulin 3) Rattus norvegicus
Analyze
Symbol: Calm3
Name: calmodulin 3
RGD ID: 2259
Description: Enables several functions, including nitric-oxide synthase binding activity; nitric-oxide synthase regulator activity; and transmembrane transporter binding activity. Involved in several processes, including positive regulation of nitric-oxide synthase activity; regulation of calcium ion transmembrane transporter activity; and regulation of vesicle-mediated transport. Located in several cellular components, including growth cone; myelin sheath; and synaptic vesicle membrane. Is active in Schaffer collateral - CA1 synapse; postsynaptic cytosol; and presynaptic cytosol. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy and long QT syndrome 16. Orthologous to human CALM3 (calmodulin 3); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; calcium/calcium-mediated signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; INTERACTS WITH 17beta-estradiol; 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calmodulin; calmodulin III; calmodulin-3; caM; Cam3; Camc; CaMIII; RNCAMIII
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,718,761 - 86,725,869 (-)NCBIGRCr8
mRatBN7.2177,590,668 - 77,597,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,589,230 - 77,592,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,970,653 - 82,977,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,534,698 - 91,541,819 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,725,742 - 84,732,863 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,844,520 - 78,851,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,843,080 - 78,851,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,092,078 - 80,099,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,245,609 - 77,252,717 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,322,279 - 77,330,919 (-)NCBI
Celera172,075,982 - 72,079,075 (-)NCBICelera
RH 3.4 Map1793.6RGD
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Calm3Ratfamilial hypertrophic cardiomyopathy susceptibilityISORGD:73738713792494DNA:polymorphism:promoter:¿¿¿34T>A(human)RGD 
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Calm3Ratlong QT syndrome  ISORGD:7373878554872ClinVar Annotator: match by term: Congenital long QT syndromeClinVarPMID:17576681|PMID:28492532|PMID:9536098
Calm3Ratlong QT syndrome 1  ISORGD:7373878554872ClinVar Annotator: match by term: Long QT syndrome 1ClinVarPMID:17576681|PMID:28492532|PMID:9536098
Calm3Ratlong QT syndrome 1  ISORGD:7373878554872ClinVar Annotator: match by term: Long QT syndrome 1 | ClinVar Annotator: match by term: more ...ClinVarPMID:11569915|PMID:17576681|PMID:23388215|PMID:24563457|PMID:24816216|PMID:24958779|PMID:25460178|PMID:25741868|PMID:26969752|PMID:28491681|PMID:28492532|PMID:31454269|PMID:9536098
Calm3Ratlong QT syndrome 1  ISORGD:7373878554872ClinVar Annotator: match by term: Long QT syndrome 1ClinVarPMID:11569915|PMID:17576681|PMID:23388215|PMID:24563457|PMID:24816216|PMID:24958779|PMID:25460178|PMID:25741868|PMID:26969752|PMID:27516456|PMID:28491681|PMID:28492532|PMID:31454269|PMID:9536098
Calm3Ratlong QT syndrome 1  ISORGD:7373878554872ClinVar Annotator: match by term: Long QT syndrome 1 | ClinVar Annotator: match by term: more ...ClinVarPMID:11569915|PMID:17576681|PMID:23388215|PMID:24563457|PMID:24816216|PMID:24958779|PMID:25460178|PMID:25741868|PMID:26969752|PMID:28491681|PMID:28492532|PMID:30530868|PMID:30574507|PMID:30847666|PMID:31454269|PMID:31535183|PMID:9536098
Calm3Ratlong QT syndrome 1  ISORGD:7373878554872ClinVar Annotator: match by term: Long QT syndrome 1 | ClinVar Annotator: match by term: more ...ClinVarPMID:17576681|PMID:25741868|PMID:28492532|PMID:31454269|PMID:9536098
Calm3Ratlong QT syndrome 16  ISORGD:7373878554872ClinVar Annotator: match by term: CALM3-related condition | ClinVar Annotator: match by term: Long QT more ...ClinVarPMID:17576681|PMID:23388215|PMID:24563457|PMID:24816216|PMID:24958779|PMID:25460178|PMID:25741868|PMID:26969752|PMID:28491681|PMID:28492532|PMID:30530868|PMID:30574507|PMID:30847666|PMID:31454269|PMID:31535183|PMID:9536098
Calm3RatWalker-Warburg syndrome  ISORGD:7373878554872ClinVar Annotator: match by term: Walker-Warburg congenital muscular dystrophyClinVarPMID:28492532
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Original Reference(s)
Calm3Ratlong QT syndrome 16  ISORGD:7373877240710 OMIM 

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Original Reference(s)
Calm3Rat(1->4)-beta-D-glucan multiple interactionsISORGD:102826480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CALM3 mRNACTDPMID:36331819
Calm3Rat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISORGD:102826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Calm3Rat1,2-dimethylhydrazine multiple interactionsISORGD:102826480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CALM3 mRNACTDPMID:22206623
Calm3Rat1,2-dimethylhydrazine affects expressionISORGD:1028264804641,2-Dimethylhydrazine affects the expression of CALM3 mRNACTDPMID:22206623
Calm3Rat17alpha-ethynylestradiol multiple interactionsISORGD:102826480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CALM3 mRNACTDPMID:17942748
Calm3Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CALM3 proteinCTDPMID:32145629
Calm3Rat17beta-estradiol decreases expressionISORGD:102826480464Estradiol results in decreased expression of CALM3 mRNACTDPMID:39298647
Calm3Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:102826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Calm3Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:73738764804642,2',4,4'-tetrabromodiphenyl ether analog results in decreased expression of CALM3 mRNACTDPMID:19095052
Calm3Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORGD:102826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Calm3Rat2,2,2-tetramine multiple interactionsEXP 6480464Trientine inhibits the reaction [Streptozocin results in decreased expression of CALM3 protein]CTDPMID:19634143
Calm3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:102826480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of CALM3 mRNACTDPMID:17942748
Calm3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CALM3 mRNACTDPMID:33387578
Calm3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CALM3 mRNACTDPMID:34747641
Calm3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:102826480464Tetrachlorodibenzodioxin affects the expression of CALM3 mRNACTDPMID:21570461|PMID:24680724
Calm3Rat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642,3,7,8-tetrachlorodibenzofuran results in decreased expression of CALM3 mRNACTDPMID:32109520
Calm3Rat2,4,4'-trichlorobiphenyl multiple interactionsISORGD:102826480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
Calm3Rat3,4-methylenedioxymethamphetamine increases expressionISORGD:102826480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of CALM3 mRNACTDPMID:20188158
Calm3Rat4,4'-sulfonyldiphenol decreases methylationISORGD:102826480464bisphenol S results in decreased methylation of CALM3 exonCTDPMID:33297965
Calm3Rat4,4'-sulfonyldiphenol affects methylationISORGD:102826480464bisphenol S affects the methylation of CALM3 geneCTDPMID:31683443

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Biological Process
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Original Reference(s)
Calm3Ratautophagosome membrane docking involved_inISSUniProtKB:P0DP231600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratautophagosome membrane docking involved_inISORGD:7373871624291 PMID:28890335RGDPMID:28890335
Calm3Ratcalcineurin-mediated signaling involved_inISORGD:7373871624291 PMID:8631777RGDPMID:8631777
Calm3Ratcalcineurin-mediated signaling involved_inIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcellular response to interferon-beta involved_inISORGD:7373871624291 PMID:35568036RGDPMID:35568036
Calm3Ratcellular response to type II interferon involved_inISORGD:7373871624291 PMID:11972023RGDPMID:11972023
Calm3Ratdetection of calcium ion involved_inISORGD:7373871624291 PMID:23040497RGDPMID:23040497
Calm3Ratdetection of calcium ion involved_inIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratestablishment of localization in cell involved_inIEAARBA:ARBA000286791600115GO_REF:0000117UniProtGO_REF:0000117
Calm3Ratestablishment of protein localization to membrane involved_inIMP 12793033PMID:23792689CAFA 
Calm3Ratestablishment of protein localization to mitochondrial membrane involved_inIMP 12793033PMID:23792689CAFA 
Calm3RatG2/M transition of mitotic cell cycle acts_upstream_of_or_withinIEAUniProtKB:P0DP28|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3RatG2/M transition of mitotic cell cycle acts_upstream_of_or_withinIEAUniProtKB:P0DP27|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3RatG2/M transition of mitotic cell cycle acts_upstream_of_or_withinISORGD:102821624291 PMID:2469574RGDPMID:2469574
Calm3RatG2/M transition of mitotic cell cycle acts_upstream_of_or_withinIEAUniProtKB:P0DP26|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratmitochondrion-endoplasmic reticulum membrane tethering involved_inISSUniProtKB:P0DP231600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratmitochondrion-endoplasmic reticulum membrane tethering involved_inISORGD:7373871624291 PMID:28890335RGDPMID:28890335
Calm3Ratnegative regulation of calcium ion export across plasma membrane involved_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratnegative regulation of high voltage-gated calcium channel activity involved_inISSUniProtKB:P0DP251600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratnegative regulation of high voltage-gated calcium channel activity involved_inISORGD:7373871624291 PMID:31454269RGDPMID:31454269
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Cellular Component
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Original Reference(s)
Calm3Ratcalcium channel complex part_ofISORGD:7373871624291 PMID:23040497RGDPMID:23040497
Calm3Ratcalcium channel complex part_ofIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalyx of Held is_active_inIEAUniProtKB:P0DP28|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalyx of Held is_active_inIEAUniProtKB:P0DP26|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalyx of Held is_active_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalyx of Held is_active_inISORGD:102821624291 PMID:31628181RGDPMID:31628181
Calm3Ratcatalytic complex part_ofISORGD:7373871624291 PMID:11807546RGDPMID:11807546
Calm3Ratcatalytic complex part_ofIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Calm3Ratcentrosome located_inISORGD:7373871624291 PMID:16760425RGDPMID:16760425
Calm3Ratcentrosome located_inIEAUniProtKB-SubCell:SL-00481600115GO_REF:0000044UniProtGO_REF:0000044
Calm3Ratcentrosome located_inIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcentrosome is_active_inIBAPANTHER:PTN008588806|UniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP251600115GO_REF:0000033GO_CentralGO_REF:0000033
Calm3Ratcilium located_inIEAUniProtKB-KW:KW-09691600115GO_REF:0000043UniProtGO_REF:0000043
Calm3Ratcytoplasm located_inISORGD:7373871624291 PMID:27165696RGDPMID:27165696
Calm3Ratcytoplasm is_active_inIBAMGI:103250|PANTHER:PTN008588804|RGD:2257|RGD:2258|RGD:2259|UniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|UniProtKB:P62157|WB:WBGene000039341600115GO_REF:0000033GO_CentralGO_REF:0000033
Calm3Ratcytoplasm located_inISSUniProtKB:P0DP231600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Calm3Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Calm3Ratcytosol located_inTAS 1600115Reactome:R-RNO-9618816ReactomeReactome:R-RNO-9618816
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Molecular Function
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Original Reference(s)
Calm3Ratadenylate cyclase activator activity enablesISORGD:7373871624291 PMID:11807546RGDPMID:11807546
Calm3Ratadenylate cyclase activator activity enablesIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratadenylate cyclase binding enablesISORGD:7373871624291UniProtKB:P40136 PMID:11807546RGDPMID:11807546
Calm3Ratadenylate cyclase binding enablesIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalcium channel inhibitor activity enablesISSUniProtKB:P0DP231600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratcalcium channel inhibitor activity enablesISORGD:7373871624291 PMID:26969752RGDPMID:26969752
Calm3Ratcalcium channel inhibitor activity enablesISSUniProtKB:P0DP241600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratcalcium channel regulator activity enablesISORGD:7373871624291 PMID:20226167RGDPMID:20226167
Calm3Ratcalcium ion binding  IDA 7241270 RGD 
Calm3Ratcalcium ion binding enablesIBAFB:FBgn0000253|FB:FBgn0004910|MGI:1931464|MGI:2677454|PANTHER:PTN000549682|PomBase:SPAC3A12.14|RGD:2257|RGD:2258|RGD:2259|SGD:S000000313|TAIR:locus:2027488|TAIR:locus:2063230|TAIR:locus:2063245|TAIR:locus:2074780|TAIR:locus:2102340|TAIR:locus:2162326|UniProtKB:P04464|UniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|UniProtKB:P60204|UniProtKB:P62149|UniProtKB:P62157|dictyBase:DDB_G0277917|dictyBase:DDB_G02794071600115GO_REF:0000033GO_CentralGO_REF:0000033
Calm3Ratcalcium ion binding enablesIEAUniProtKB:P0DP25|ensembl:ENSP000002912951600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratcalcium ion binding enablesIEAInterPro:IPR0020481600115GO_REF:0000002InterProGO_REF:0000002
Calm3Ratcalcium ion binding enablesISORGD:7373871624291 PMID:11807546, PMID:23040497, PMID:26164367, PMID:26969752, PMID:27516456, PMID:27564677, PMID:31454269, PMID:35568036, PMID:7607248, PMID:8631777RGDPMID:11807546|PMID:23040497|PMID:26164367|PMID:26969752|PMID:27516456|PMID:27564677|PMID:31454269|PMID:35568036|PMID:7607248|PMID:8631777
Calm3Ratcalcium ion binding enablesISSUniProtKB:P0DP231600115GO_REF:0000024UniProtGO_REF:0000024
Calm3Ratcalcium ion binding  IDA 7241220 RGD 
Calm3Ratcalcium-dependent protein binding enablesIEAUniProtKB:P0DP27|ensembl:ENSMUSP000000195141600115GO_REF:0000107EnsemblGO_REF:0000107
Calm3Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Calm3Ratnitric-oxide synthase binding  IDA 7241266 RGD 
Calm3Ratnitric-oxide synthase regulator activity  IDA 7241266 RGD 
Calm3Ratprotein binding enablesIPIUniProtKB:P354008554716PMID:12021391UniProt 
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RGD Manual Annotations


  

Imported Annotations - KEGG (archival)

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Original Reference(s)
Calm3RatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Calm3Ratcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020
Calm3Ratglioma pathway  IEA 6907045 KEGGrno:05214
Calm3Ratgonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGrno:04912
Calm3Ratinsulin signaling pathway   IEA 6907045 KEGGrno:04910
Calm3Ratlong term potentiation  IEA 6907045 KEGGrno:04720
Calm3Ratneurotrophic factor signaling pathway  IEA 6907045 KEGGrno:04722
Calm3Ratphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070
Calm3Rattuberculosis pathway  IEA 6907045 KEGGrno:05152
Calm3Ratvisual phototransduction pathway   IEA 6907045 KEGGrno:04744
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Imported Annotations - PID (archival)

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Original Reference(s)
Calm3Ratinsulin responsive facilitative sugar transporter mediated glucose transport pathway   ISORGD:7373876484113 PIDPID:200196
Calm3RatN-cadherin signaling pathway  ISORGD:7373876484113 PIDPID:200209
Calm3Ratp38 MAPK signaling pathway   ISORGD:7373876484113 PIDPID:200018
Calm3Rattype II interferon signaling pathway  ISORGD:7373876484113 PIDPID:200129
Calm3Ratvascular endothelial growth factor signaling pathway   ISORGD:7373876484113 PIDPID:200188

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Reference Title
Reference Citation
1. The NMDA receptor NR1 C1 region bound to calmodulin: structural insights into functional differences between homologous domains. Ataman ZA, etal., Structure. 2007 Dec;15(12):1603-17. doi: 10.1016/j.str.2007.10.012.
2. Pathogenic NPHP5 mutations impair protein interaction with Cep290, a prerequisite for ciliogenesis. Barbelanne M, etal., Hum Mol Genet. 2013 Jun 15;22(12):2482-94. doi: 10.1093/hmg/ddt100. Epub 2013 Feb 27.
3. Gene expression pattern in PC12 cells with reduced PMCA2 or PMCA3 isoform: selective up-regulation of calmodulin and neuromodulin. Boczek T, etal., Mol Cell Biochem. 2012 Jan;360(1-2):89-102. doi: 10.1007/s11010-011-1047-3. Epub 2011 Sep 13.
4. Heme oxygenase-2 is activated by calcium-calmodulin. Boehning D, etal., J Biol Chem. 2004 Jul 23;279(30):30927-30. Epub 2004 Jun 2.
5. Phosphorylase kinase: the complexity of its regulation is reflected in the complexity of its structure. Brushia RJ and Walsh DA, Front Biosci. 1999 Sep 15;4:D618-41.
6. Rad GTPase deficiency leads to cardiac hypertrophy. Chang L, etal., Circulation. 2007 Dec 18;116(25):2976-83. Epub 2007 Dec 3.
7. Calmodulin: a prototypical calcium sensor. Chin D and Means AR, Trends Cell Biol. 2000 Aug;10(8):322-8.
8. Calcium signaling. Clapham DE, Cell. 2007 Dec 14;131(6):1047-58.
9. FRET-based mapping of calmodulin bound to the RyR1 Ca2+ release channel. Cornea RL, etal., Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6128-33. doi: 10.1073/pnas.0813010106. Epub 2009 Mar 30.
10. CaMKII regulation in information processing and storage. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
11. Phospholipase C, Ca2+, and calmodulin signaling are required for 5-HT2A receptor-mediated transamidation of Rac1 by transglutaminase. Dai Y, etal., Psychopharmacology (Berl). 2011 Feb;213(2-3):403-12. doi: 10.1007/s00213-010-1984-7. Epub 2010 Aug 18.
12. Calmodulin binds to specific sequences in the cytoplasmic domain of C-CAM and down-regulates C-CAM self-association. Edlund M, etal., J Biol Chem. 1996 Jan 19;271(3):1393-9.
13. Interaction of calmodulin with Sec61alpha limits Ca2+ leakage from the endoplasmic reticulum. Erdmann F, etal., EMBO J. 2011 Jan 5;30(1):17-31. doi: 10.1038/emboj.2010.284. Epub 2010 Nov 23.
14. Sequence homology of the 3'-untranslated region of calmodulin III in mammals. Friedberg F and Rhoads AR, Mol Biol Rep 2001 Mar;28(1):27-30.
15. A new polymorphism in human calmodulin III gene promoter is a potential modifier gene for familial hypertrophic cardiomyopathy. Friedrich FW, etal., Eur Heart J. 2009 Jul;30(13):1648-55. doi: 10.1093/eurheartj/ehp153. Epub 2009 May 8.
16. Direct detection of calmodulin tuning by ryanodine receptor channel targets using a Ca2+-sensitive acrylodan-labeled calmodulin. Fruen BR, etal., Biochemistry. 2005 Jan 11;44(1):278-84.
17. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
18. Calcium- and calmodulin-dependent inactivation of calcium channels in inner hair cells of the rat cochlea. Grant L and Fuchs P, J Neurophysiol. 2008 May;99(5):2183-93. doi: 10.1152/jn.01174.2007. Epub 2008 Mar 5.
19. Calmodulin-dependent protein kinase kinase-beta is an alternative upstream kinase for AMP-activated protein kinase. Hawley SA, etal., Cell Metab. 2005 Jul;2(1):9-19.
20. The Actin Nucleator Cobl Is Controlled by Calcium and Calmodulin. Hou W, etal., PLoS Biol. 2015 Sep 3;13(9):e1002233. doi: 10.1371/journal.pbio.1002233. eCollection 2015.
1 to 20 of 57 rows
PMID:2469574   PMID:7607248   PMID:8631777   PMID:10629061   PMID:11573098   PMID:11694536   PMID:11807546   PMID:11980920   PMID:11984006   PMID:12223552   PMID:15294163   PMID:15632291  
PMID:16556866   PMID:16760425   PMID:20103772   PMID:20226167   PMID:20668654   PMID:21167176   PMID:22067155   PMID:22926577   PMID:23040497   PMID:25089838   PMID:25441029   PMID:26164367  
PMID:26969752   PMID:27165696   PMID:27516456   PMID:27564677   PMID:28153703   PMID:28765142  



Calm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,718,761 - 86,725,869 (-)NCBIGRCr8
mRatBN7.2177,590,668 - 77,597,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,589,230 - 77,592,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,970,653 - 82,977,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,534,698 - 91,541,819 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,725,742 - 84,732,863 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,844,520 - 78,851,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,843,080 - 78,851,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0180,092,078 - 80,099,186 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,245,609 - 77,252,717 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,322,279 - 77,330,919 (-)NCBI
Celera172,075,982 - 72,079,075 (-)NCBICelera
RH 3.4 Map1793.6RGD
Cytogenetic Map1q21NCBI
CALM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,601,074 - 46,610,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,601,074 - 46,610,782 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,104,331 - 47,114,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,796,352 - 51,805,879 (+)NCBINCBI36Build 36hg18NCBI36
Build 341951,796,351 - 51,805,878NCBI
Celera1943,908,038 - 43,917,566 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,529,569 - 43,539,096 (+)NCBIHuRef
CHM1_11947,106,370 - 47,115,897 (+)NCBICHM1_1
T2T-CHM13v2.01949,426,688 - 49,436,397 (+)NCBIT2T-CHM13v2.0
Calm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,649,304 - 16,657,957 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,649,304 - 16,658,039 (-)EnsemblGRCm39 Ensembl
GRCm38716,915,379 - 16,924,032 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,915,379 - 16,924,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,500,728 - 17,509,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36716,073,901 - 16,082,476 (-)NCBIMGSCv36mm8
Celera714,121,809 - 14,130,463 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
Calm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574672,300 - 680,924 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574672,441 - 680,924 (+)NCBIChiLan1.0ChiLan1.0
CALM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,750,443 - 52,759,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,621,264 - 54,630,788 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,593,069 - 43,602,550 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,121,687 - 52,131,135 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,121,687 - 52,131,135 (+)Ensemblpanpan1.1panPan2
CALM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,284,729 - 109,294,491 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,286,155 - 109,294,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,764,035 - 108,773,479 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,810,758 - 109,820,206 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,763,917 - 109,820,174 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,487,893 - 109,497,333 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,121,990 - 109,131,419 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,990,749 - 110,000,195 (-)NCBIUU_Cfam_GSD_1.0
Calm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,853,317 - 18,861,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664471,440 - 480,441 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664471,446 - 480,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,506,674 - 52,516,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,506,979 - 52,516,704 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,824,454 - 47,834,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,957,012 - 39,966,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,957,320 - 39,966,581 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl1460,027,801 - 60,044,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,668,290 - 19,677,858 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,958,820 - 6,966,514 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,957,775 - 6,966,505 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Calm3
15 total Variants

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir1rno-miR-1-3pMirtarbaseexternal_infoqRT-PCRFunctional MTI (Weak)19188439

Predicted Target Of
Summary Value
Count of predictions:340
Count of miRNA genes:186
Interacting mature miRNAs:212
Transcripts:ENSRNOT00000022603
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat

1 to 10 of 47 rows
D1Wox12  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,721,172 - 86,721,319 (+)Marker Load Pipeline
mRatBN7.2177,593,079 - 77,593,226 (+)MAPPERmRatBN7.2
Rnor_6.0178,846,932 - 78,847,078NCBIRnor6.0
Rnor_5.0180,094,490 - 80,094,636UniSTSRnor5.0
RGSC_v3.4177,248,020 - 77,248,167RGDRGSC3.4
RGSC_v3.4177,248,021 - 77,248,167UniSTSRGSC3.4
RGSC_v3.1177,326,131 - 77,326,278RGD
Celera172,078,394 - 72,078,540UniSTS
RH 3.4 Map1791.5UniSTS
RH 3.4 Map1791.5RGD
RH 2.0 Map1511.8RGD
Cytogenetic Map1q22UniSTS
D1Arb35  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,721,077 - 86,721,327 (+)Marker Load Pipeline
mRatBN7.2177,592,984 - 77,593,234 (+)MAPPERmRatBN7.2
Rnor_6.0178,846,837 - 78,847,086NCBIRnor6.0
Rnor_5.0180,094,395 - 80,094,644UniSTSRnor5.0
RGSC_v3.4177,247,925 - 77,248,175RGDRGSC3.4
RGSC_v3.4177,247,926 - 77,248,175UniSTSRGSC3.4
RGSC_v3.1177,326,036 - 77,326,286RGD
Celera172,078,299 - 72,078,548UniSTS
FHH x ACI Map139.05RGD
FHH x ACI Map139.05UniSTS
Cytogenetic Map1q22UniSTS
D1Mgh27  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,726,859 - 86,727,054 (+)Marker Load Pipeline
mRatBN7.2177,598,766 - 77,598,961 (+)MAPPERmRatBN7.2
Rnor_6.0178,852,619 - 78,852,813NCBIRnor6.0
Rnor_5.0180,100,177 - 80,100,371UniSTSRnor5.0
RGSC_v3.4177,253,707 - 77,253,902RGDRGSC3.4
RGSC_v3.4177,253,708 - 77,253,902UniSTSRGSC3.4
RGSC_v3.1177,331,818 - 77,332,013RGD
Celera172,083,915 - 72,084,109UniSTS
RH 3.4 Map1790.5UniSTS
RH 3.4 Map1790.5RGD
Cytogenetic Map1q22UniSTS
D1Mco19  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,592,972 - 77,593,244 (+)MAPPERmRatBN7.2
Rnor_6.0178,846,825 - 78,847,096NCBIRnor6.0
Rnor_5.0180,094,383 - 80,094,654UniSTSRnor5.0
RGSC_v3.4177,247,913 - 77,248,185RGDRGSC3.4
RGSC_v3.4177,247,914 - 77,248,185UniSTSRGSC3.4
RGSC_v3.1177,326,024 - 77,326,296RGD
Celera172,078,287 - 72,078,558UniSTS
Cytogenetic Map1q22UniSTS
RH128262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25102,623,675 - 102,623,875 (+)MAPPERmRatBN7.2
mRatBN7.2177,589,281 - 77,589,472 (+)MAPPERmRatBN7.2
Rnor_6.0178,843,134 - 78,843,324NCBIRnor6.0
Rnor_6.05106,467,083 - 106,467,282NCBIRnor6.0
Rnor_5.0180,090,692 - 80,090,882UniSTSRnor5.0
Rnor_5.05110,448,523 - 110,448,722UniSTSRnor5.0
RGSC_v3.4177,244,223 - 77,244,413UniSTSRGSC3.4
Celera5100,486,767 - 100,486,966UniSTS
Celera172,074,596 - 72,074,786UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q22UniSTS
UniSTS:141218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25102,623,667 - 102,623,851 (+)MAPPERmRatBN7.2
mRatBN7.2177,589,273 - 77,589,448 (+)MAPPERmRatBN7.2
Rnor_6.0178,843,126 - 78,843,300NCBIRnor6.0
Rnor_6.05106,467,075 - 106,467,258NCBIRnor6.0
Rnor_5.0180,090,684 - 80,090,858UniSTSRnor5.0
Rnor_5.05110,448,515 - 110,448,698UniSTSRnor5.0
RGSC_v3.4177,244,215 - 77,244,389UniSTSRGSC3.4
Celera5100,486,791 - 100,486,974UniSTS
Celera172,074,588 - 72,074,762UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q22UniSTS
RH137447  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,718,789 - 86,719,092 (+)Marker Load Pipeline
mRatBN7.2177,590,696 - 77,590,999 (+)MAPPERmRatBN7.2
Rnor_6.0178,844,549 - 78,844,851NCBIRnor6.0
Rnor_5.0180,092,107 - 80,092,409UniSTSRnor5.0
RGSC_v3.4177,245,638 - 77,245,940UniSTSRGSC3.4
Celera172,076,011 - 72,076,313UniSTS
Cytogenetic Map1q22UniSTS
Calm3  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,722,391 - 86,722,650 (+)Marker Load Pipeline
mRatBN7.2177,594,298 - 77,594,557 (+)MAPPERmRatBN7.2
Rnor_6.0178,848,151 - 78,848,409NCBIRnor6.0
Rnor_5.0180,095,709 - 80,095,967UniSTSRnor5.0
RGSC_v3.4177,249,240 - 77,249,498UniSTSRGSC3.4
Celera172,079,613 - 72,079,871UniSTS
RH 3.4 Map1793.6UniSTS
Cytogenetic Map1q22UniSTS
MARC_7076-7077:992008234:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,718,770 - 86,719,111 (+)Marker Load Pipeline
mRatBN7.2177,590,677 - 77,591,018 (+)MAPPERmRatBN7.2
Rnor_6.0178,844,530 - 78,844,870NCBIRnor6.0
Rnor_5.0180,092,088 - 80,092,428UniSTSRnor5.0
RGSC_v3.4177,245,619 - 77,245,959UniSTSRGSC3.4
Celera172,075,992 - 72,076,332UniSTS
Cytogenetic Map1q22UniSTS







Ensembl Acc Id: ENSRNOT00000022603   ⟹   ENSRNOP00000022603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,589,230 - 77,592,207 (-)Ensembl
Rnor_6.0 Ensembl178,843,080 - 78,851,719 (-)Ensembl
RefSeq Acc Id: NM_012518   ⟹   NP_036650
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,718,761 - 86,725,869 (-)NCBI
mRatBN7.2177,590,668 - 77,597,776 (-)NCBI
Rnor_6.0178,844,520 - 78,851,628 (-)NCBI
Rnor_5.0180,092,078 - 80,099,186 (-)NCBI
RGSC_v3.4177,245,609 - 77,252,717 (-)RGD
Celera172,075,982 - 72,079,075 (-)RGD
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_036650 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40864 (Get FASTA)   NCBI Sequence Viewer  
  AAH63187 (Get FASTA)   NCBI Sequence Viewer  
  BAA14394 (Get FASTA)   NCBI Sequence Viewer  
  CAA32050 (Get FASTA)   NCBI Sequence Viewer  
  CAA32478 (Get FASTA)   NCBI Sequence Viewer  
  EDM08292 (Get FASTA)   NCBI Sequence Viewer  
  EDM08293 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063822.1
  ENSRNOP00000103420
GenBank Protein P0DP31 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_036650   ⟸   NM_012518
- UniProtKB: P62161 (UniProtKB/Swiss-Prot),   P0DP31 (UniProtKB/Swiss-Prot),   P0DP30 (UniProtKB/Swiss-Prot),   P0DP29 (UniProtKB/Swiss-Prot),   A6JEH0 (UniProtKB/TrEMBL),   A0A8I5XV89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022603   ⟸   ENSRNOT00000022603
EF-hand

Name Modeler Protein Id AA Range Protein Structure
AF-P0DP29-F1-model_v2 AlphaFold P0DP29 1-149 view protein structure
AF-P0DP30-F1-model_v2 AlphaFold P0DP30 1-149 view protein structure
AF-P0DP31-F1-model_v2 AlphaFold P0DP31 1-149 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689745
Promoter ID:EPDNEW_R269
Type:initiation region
Name:Calm2_1
Description:calmodulin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0178,851,694 - 78,851,754EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60587 BioCyc
Ensembl Genes ENSRNOG00000004060 UniProtKB/Swiss-Prot
  ENSRNOG00000016770 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000064679.3 UniProtKB/Swiss-Prot
  ENSRNOT00000124429 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6890866 IMAGE-MGC_LOAD
InterPro CALM/Myosin/TropC-like UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
KEGG Report rno:24242 UniProtKB/Swiss-Prot
  rno:24244 UniProtKB/Swiss-Prot
  rno:50663 UniProtKB/Swiss-Prot
MGC_CLONE MGC:73021 IMAGE-MGC_LOAD
NCBI Gene 24244 ENTREZGENE
PANTHER CALMODULIN LIKE 3 UniProtKB/Swiss-Prot
  MYOSIN LIGHT CHAIN 1, 3 UniProtKB/Swiss-Prot
Pfam EF-hand_7 UniProtKB/Swiss-Prot
PhenoGen Calm3 PhenoGen
PRINTS RECOVERIN UniProtKB/Swiss-Prot
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004060 RatGTEx
  ENSRNOG00000016770 RatGTEx
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
TIGR TC204370
UniProt A0A8I5XV89 ENTREZGENE, UniProtKB/TrEMBL
  A6J8E1_RAT UniProtKB/TrEMBL
  A6J8E2_RAT UniProtKB/TrEMBL
  A6JEH0 ENTREZGENE, UniProtKB/TrEMBL
  CALM1_RAT UniProtKB/Swiss-Prot
  CALM2_RAT UniProtKB/Swiss-Prot
  CALM3_RAT UniProtKB/Swiss-Prot
  P0DP29 ENTREZGENE
  P0DP30 ENTREZGENE
  P0DP31 ENTREZGENE
  P62161 ENTREZGENE
UniProt Secondary P02593 UniProtKB/Swiss-Prot
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Calm3  calmodulin 3    Calmodulin III  Name updated 625702 APPROVED
2002-06-10 Calm3  Calmodulin III      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_expression expressed mainly in skeletal muscle and brain 634687
gene_protein 2.2 and 0.75 kb mRNA 634686