CALM1 (calmodulin 1) - Rat Genome Database

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Gene: CALM1 (calmodulin 1) Homo sapiens
Analyze
Symbol: CALM1
Name: calmodulin 1
RGD ID: 735369
HGNC Page HGNC
Description: Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CALM2; CALM3; CALML2; calmodulin; calmodulin 1 (phosphorylase kinase, delta); calmodulin-1; Calmodulin-2; Calmodulin-3; caM; CAM2; CAM3; CAMB; CAMC; CAMI; CAMIII; CPVT4; DD132; LQT14; PHKD; phosphorylase kinase subunit delta; phosphorylase kinase, delta subunit; prepro-calmodulin 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: CALM1P1   CALM1P2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1490,396,502 - 90,408,268 (+)EnsemblGRCh38hg38GRCh38
GRCh381490,396,502 - 90,408,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371490,862,846 - 90,874,612 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,933,126 - 89,944,363 (+)NCBINCBI36hg18NCBI36
Build 341489,933,129 - 89,944,148NCBI
Celera1470,910,477 - 70,921,767 (+)NCBI
Cytogenetic Map14q32.11NCBI
HuRef1471,038,153 - 71,049,443 (+)NCBIHuRef
CHM1_11490,801,276 - 90,812,578 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (EXP)
acrolein  (EXP)
acrylamide  (ISO)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
antimycin A  (EXP)
antirheumatic drug  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
bucladesine  (EXP)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
carbamazepine  (EXP)
casticin  (ISO)
chlordecone  (ISO)
cobalt dichloride  (EXP)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
Deguelin  (EXP)
dextran sulfate  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dibutylstannane  (ISO)
diclofenac  (EXP)
dioxygen  (EXP)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
endosulfan  (ISO)
ethanol  (ISO)
etoposide  (EXP)
fenofibrate  (ISO)
fenvalerate  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (EXP,ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
leflunomide  (EXP)
limonene  (ISO)
lipoic acid  (ISO)
maneb  (ISO)
mastoparan  (ISO)
medroxyprogesterone acetate  (EXP)
melatonin  (ISO)
melittin  (ISO)
methylmercury chloride  (EXP)
methylparaben  (EXP)
methylseleninic acid  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nitric oxide  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
phencyclidine  (EXP)
phenobarbital  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (EXP)
progesterone  (ISO)
pyrimidifen  (EXP)
raloxifene  (EXP)
retinyl acetate  (ISO)
rimonabant  (ISO)
rotenone  (ISO)
sarin  (EXP)
SB 431542  (EXP)
sodium arsenite  (ISO)
streptozocin  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
tebufenpyrad  (EXP)
temozolomide  (EXP)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
triphenylstannane  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP,ISO)
vanadyl sulfate  (EXP)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of adenylate cyclase activity  (IEA,ISO)
autophagosome membrane docking  (IDA)
calcium-mediated signaling  (IEA,ISO)
detection of calcium ion  (IMP)
establishment of protein localization to membrane  (ISO)
establishment of protein localization to mitochondrial membrane  (IEA)
G protein-coupled receptor signaling pathway  (TAS)
G2/M transition of mitotic cell cycle  (IEA,ISO)
mitochondrion-endoplasmic reticulum membrane tethering  (IDA)
negative regulation of calcium ion export across plasma membrane  (IEA,ISS)
negative regulation of calcium ion transmembrane transporter activity  (ISS)
negative regulation of high voltage-gated calcium channel activity  (IMP)
negative regulation of peptidyl-threonine phosphorylation  (TAS)
negative regulation of ryanodine-sensitive calcium-release channel activity  (IDA,ISS)
organelle localization by membrane tethering  (IDA)
phosphorylation  (IEA)
positive regulation of cyclic-nucleotide phosphodiesterase activity  (IDA)
positive regulation of DNA binding  (IEA,ISO)
positive regulation of nitric-oxide synthase activity  (IEA,ISO)
positive regulation of peptidyl-threonine phosphorylation  (TAS)
positive regulation of phosphoprotein phosphatase activity  (IDA)
positive regulation of protein autophosphorylation  (TAS)
positive regulation of protein dephosphorylation  (IDA)
positive regulation of protein serine/threonine kinase activity  (TAS)
positive regulation of ryanodine-sensitive calcium-release channel activity  (IBA,IDA)
regulation of calcium-mediated signaling  (IEA,ISS)
regulation of cardiac muscle cell action potential  (IMP)
regulation of cardiac muscle contraction  (IMP)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IC)
regulation of cell communication by electrical coupling involved in cardiac conduction  (IC)
regulation of cyclase activity  (IEA)
regulation of cytokinesis  (IMP)
regulation of heart rate  (IMP)
regulation of high voltage-gated calcium channel activity  (ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IDA)
regulation of ryanodine-sensitive calcium-release channel activity  (IBA,IDA,ISO)
regulation of synaptic vesicle endocytosis  (IEA)
regulation of synaptic vesicle exocytosis  (IEA)
response to amphetamine  (IEA,ISO)
response to calcium ion  (IDA)
response to corticosterone  (IEA)
substantia nigra development  (HEP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (EXP)
adenosine monophosphate-activated protein kinase (AMPK) signaling pathway  (TAS)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (EXP)
Alzheimer's disease pathway  (IEA)
amiodarone pharmacodynamics pathway  (EXP)
amlodipine pharmacodynamics pathway  (EXP)
atenolol pharmacodynamics pathway  (EXP)
betaxolol pharmacodynamics pathway  (EXP)
bisoprolol pharmacodynamics pathway  (EXP)
bupranolol drug pathway  (EXP)
bupranolol pharmacodynamics pathway  (EXP)
calcium/calcium-mediated signaling pathway  (TAS)
calcium/calmodulin dependent kinase 2 signaling pathway  (TAS)
carvedilol pharmacodynamics pathway  (EXP)
diltiazem pharmacodynamics pathway  (EXP)
disopyramide pharmacodynamics pathway  (EXP)
dobutamine pharmacodynamics pathway  (EXP)
esmolol pharmacodynamics pathway  (EXP)
flecainde pharmacodynamics pathway  (EXP)
fosphenytoin pharmacodynamics pathway  (EXP)
glioma pathway  (IEA)
glycogen degradation pathway  (TAS)
gonadotropin-releasing hormone signaling pathway  (IEA)
ibutilide pharmacodynamics pathway  (EXP)
insulin responsive facilitative sugar transporter mediated glucose transport pathway  (EXP)
insulin signaling pathway  (IEA)
isoprenaline pharmacodynamics pathway  (EXP)
isradipine pharmacodynamics pathway  (EXP)
levobunolol pharmacodynamics pathway  (EXP)
lidocaine pharmacodynamics pathway  (EXP)
long term potentiation  (IEA)
metoprolol pharmacodynamics pathway  (EXP)
mexiletine pharmacodynamics pathway  (EXP)
N-cadherin signaling pathway  (EXP)
nadolol pharmacodynamics pathway  (EXP)
nebivolol pharmacodynamics pathway  (EXP)
neurotrophic factor signaling pathway  (IEA)
nifedipine pharmacodynamics pathway  (EXP)
nimodipine pharmacodynamics pathway  (EXP)
nisoldipine pharmacodynamics pathway  (EXP)
nitrendipine pharmacodynamics pathway  (EXP)
p38 MAPK signaling pathway  (EXP)
penbutolol pharmacodynamics pathway  (EXP)
phenytoin pharmacodynamics pathway  (EXP)
phosphatidylinositol 3-kinase signaling pathway  (IEA)
pindolol pharmacodynamics pathway  (EXP)
procainamide pharmacodynamics pathway  (EXP)
propranolol pharmacodynamics pathway  (EXP)
quinidine pharmacodynamics pathway  (EXP)
sotalol pharmacodynamics pathway  (EXP)
timolol pharmacodynamics pathway  (EXP)
tuberculosis pathway  (IEA)
type II interferon signaling pathway  (EXP)
vascular endothelial growth factor signaling pathway  (EXP)
verapamil pharmacodynamics pathway  (EXP)
visual phototransduction pathway  (IEA)

References

Additional References at PubMed
PMID:1332771   PMID:1519061   PMID:1520270   PMID:1544444   PMID:1660262   PMID:1790714   PMID:1872871   PMID:2062825   PMID:2123288   PMID:2161834   PMID:2223880   PMID:2445749  
PMID:2455687   PMID:2487274   PMID:2507540   PMID:2853949   PMID:3111527   PMID:3350007   PMID:3472906   PMID:6385987   PMID:6847627   PMID:7490111   PMID:7525583   PMID:7559563  
PMID:7593266   PMID:7607248   PMID:7642608   PMID:7836475   PMID:7887964   PMID:7925473   PMID:7947686   PMID:8206911   PMID:8226798   PMID:8312049   PMID:8314583   PMID:8486648  
PMID:8573130   PMID:8625412   PMID:8626479   PMID:8631777   PMID:8639568   PMID:8663089   PMID:8670801   PMID:8756646   PMID:8769426   PMID:8780394   PMID:8810259   PMID:8824319  
PMID:8862395   PMID:8872303   PMID:8900147   PMID:8901523   PMID:9003189   PMID:9009191   PMID:9092566   PMID:9096366   PMID:9115241   PMID:9115269   PMID:9188503   PMID:9202019  
PMID:9278050   PMID:9282777   PMID:9341188   PMID:9362478   PMID:9374536   PMID:9405457   PMID:9490638   PMID:9512352   PMID:9658102   PMID:9677319   PMID:9681195   PMID:9728925  
PMID:9753452   PMID:9774336   PMID:9822657   PMID:9837900   PMID:9923700   PMID:9952395   PMID:10026195   PMID:10026200   PMID:10075657   PMID:10075700   PMID:10088721   PMID:10333484  
PMID:10411641   PMID:10416864   PMID:10488094   PMID:10547355   PMID:10625668   PMID:10681496   PMID:10692436   PMID:10747990   PMID:10748158   PMID:10757985   PMID:10767429   PMID:10816571  
PMID:10823944   PMID:10827182   PMID:10852921   PMID:10860555   PMID:10880439   PMID:10893241   PMID:10899953   PMID:11054265   PMID:11072229   PMID:11118454   PMID:11171103   PMID:11178895  
PMID:11248124   PMID:11278607   PMID:11286509   PMID:11306590   PMID:11323678   PMID:11395482   PMID:11397791   PMID:11448995   PMID:11457836   PMID:11468167   PMID:11585916   PMID:11734550  
PMID:11736632   PMID:11741295   PMID:11807546   PMID:11807557   PMID:11811958   PMID:11827172   PMID:11847276   PMID:11853560   PMID:11953448   PMID:11981030   PMID:11984006   PMID:12006621  
PMID:12032157   PMID:12034722   PMID:12051765   PMID:12135876   PMID:12153558   PMID:12202484   PMID:12221128   PMID:12223552   PMID:12358748   PMID:12359306   PMID:12408866   PMID:12446675  
PMID:12475216   PMID:12477932   PMID:12509414   PMID:12556500   PMID:12577052   PMID:12594225   PMID:12610000   PMID:12626507   PMID:12626508   PMID:12715898   PMID:12724311   PMID:12727204  
PMID:12805215   PMID:12808128   PMID:12809501   PMID:12821674   PMID:12901717   PMID:12925680   PMID:14551202   PMID:14594800   PMID:14613930   PMID:14695896   PMID:14743216   PMID:14744259  
PMID:14960328   PMID:14978283   PMID:14985437   PMID:15048887   PMID:15063758   PMID:15080792   PMID:15087444   PMID:15104175   PMID:15140941   PMID:15147735   PMID:15161933   PMID:15229223  
PMID:15316014   PMID:15494036   PMID:15522886   PMID:15583004   PMID:15632291   PMID:15664518   PMID:15670850   PMID:15686475   PMID:15719022   PMID:15746150   PMID:15746172   PMID:15746192  
PMID:15757646   PMID:15806159   PMID:15817490   PMID:15840729   PMID:15851513   PMID:15902271   PMID:15990872   PMID:16013055   PMID:16030015   PMID:16051151   PMID:16051665   PMID:16084495  
PMID:16127172   PMID:16154564   PMID:16189514   PMID:16229872   PMID:16258073   PMID:16299511   PMID:16338416   PMID:16344560   PMID:16359877   PMID:16478480   PMID:16505387   PMID:16512683  
PMID:16522924   PMID:16613843   PMID:16627785   PMID:16760425   PMID:16799092   PMID:17046994   PMID:17202341   PMID:17314412   PMID:17353931   PMID:17379601   PMID:17550899   PMID:17568776  
PMID:17569884   PMID:17580302   PMID:17582331   PMID:17620599   PMID:17654480   PMID:17696464   PMID:17719545   PMID:17884685   PMID:17942410   PMID:17975119   PMID:18001530   PMID:18070603  
PMID:18178620   PMID:18201104   PMID:18370588   PMID:18452398   PMID:18553937   PMID:18567582   PMID:18570893   PMID:18694559   PMID:18768750   PMID:18786401   PMID:18940010   PMID:18940602  
PMID:18989758   PMID:19023099   PMID:19034380   PMID:19080622   PMID:19133300   PMID:19164471   PMID:19190083   PMID:19279214   PMID:19322201   PMID:19358819   PMID:19596235   PMID:19614740  
PMID:19615732   PMID:19632986   PMID:19651602   PMID:19658100   PMID:19667195   PMID:19737939   PMID:19765263   PMID:19855925   PMID:19913121   PMID:20012528   PMID:20029029   PMID:20103772  
PMID:20226167   PMID:20301308   PMID:20301466   PMID:20458337   PMID:20466722   PMID:20468064   PMID:20488189   PMID:20562859   PMID:20618440   PMID:20628086   PMID:20668654   PMID:20705923  
PMID:20708613   PMID:20738160   PMID:20876399   PMID:20946164   PMID:20953164   PMID:20956522   PMID:21047202   PMID:21102557   PMID:21124984   PMID:21145461   PMID:21150319   PMID:21167176  
PMID:21299499   PMID:21372285   PMID:21439835   PMID:21516116   PMID:21555518   PMID:21565611   PMID:21602787   PMID:21630459   PMID:21640070   PMID:21664913   PMID:21726526   PMID:21726808  
PMID:21730051   PMID:21799007   PMID:21873635   PMID:21901608   PMID:21951318   PMID:21988832   PMID:22004035   PMID:22009783   PMID:22009847   PMID:22044025   PMID:22067155   PMID:22100452  
PMID:22266860   PMID:22295092   PMID:22323446   PMID:22342729   PMID:22363329   PMID:22405011   PMID:22437832   PMID:22451665   PMID:22486744   PMID:22519731   PMID:22588125   PMID:22645313  
PMID:22658674   PMID:22705208   PMID:22767601   PMID:22768143   PMID:22779921   PMID:22801425   PMID:22803592   PMID:22856685   PMID:22926577   PMID:22939629   PMID:22996592   PMID:23019329  
PMID:23040497   PMID:23077317   PMID:23152621   PMID:23159936   PMID:23235156   PMID:23272104   PMID:23285036   PMID:23300090   PMID:23322042   PMID:23352230   PMID:23370391   PMID:23376485  
PMID:23388215   PMID:23398456   PMID:23437200   PMID:23438482   PMID:23446637   PMID:23457304   PMID:23552119   PMID:23624269   PMID:23658780   PMID:23662433   PMID:23705972   PMID:23743201  
PMID:23755207   PMID:23760276   PMID:23798571   PMID:23831686   PMID:23838429   PMID:23893133   PMID:23967355   PMID:24032677   PMID:24081810   PMID:24088894   PMID:24419375   PMID:24420768  
PMID:24420770   PMID:24457600   PMID:24500712   PMID:24530797   PMID:24551838   PMID:24658140   PMID:24713697   PMID:24779925   PMID:24816216   PMID:24907274   PMID:24981860   PMID:25005783  
PMID:25036739   PMID:25145833   PMID:25232683   PMID:25251320   PMID:25268113   PMID:25370050   PMID:25402006   PMID:25416956   PMID:25437307   PMID:25437912   PMID:25441029   PMID:25470139  
PMID:25662211   PMID:25703379   PMID:25737280   PMID:25751535   PMID:25940090   PMID:25956027   PMID:25959826   PMID:25963833   PMID:26001204   PMID:26085527   PMID:26148514   PMID:26164367  
PMID:26196381   PMID:26269332   PMID:26391397   PMID:26421717   PMID:26487174   PMID:26494044   PMID:26496610   PMID:26506232   PMID:26529318   PMID:26559977   PMID:26561776   PMID:26618792  
PMID:26618866   PMID:26638075   PMID:26641092   PMID:26675311   PMID:26816005   PMID:26828872   PMID:26858457   PMID:26969752   PMID:27009875   PMID:27012437   PMID:27093085   PMID:27129269  
PMID:27165696   PMID:27173435   PMID:27226555   PMID:27325704   PMID:27339229   PMID:27342126   PMID:27421986   PMID:27499441   PMID:27516456   PMID:27545878   PMID:27564677   PMID:27591049  
PMID:27632770   PMID:27684187   PMID:27760856   PMID:27787197   PMID:27790916   PMID:27798963   PMID:27815504   PMID:27856935   PMID:27926480   PMID:27927985   PMID:27933776   PMID:27956550  
PMID:28003368   PMID:28092099   PMID:28130124   PMID:28158429   PMID:28174300   PMID:28222617   PMID:28295264   PMID:28360104   PMID:28422741   PMID:28449373   PMID:28462395   PMID:28515276  
PMID:28581483   PMID:28842480   PMID:28849027   PMID:28890335   PMID:28976808   PMID:28978262   PMID:28986522   PMID:29128334   PMID:29240297   PMID:29247668   PMID:29298900   PMID:29409956  
PMID:29463791   PMID:29494137   PMID:29505720   PMID:29509190   PMID:29513927   PMID:29584409   PMID:29663486   PMID:29713907   PMID:29724949   PMID:29802200   PMID:29880196   PMID:29932249  
PMID:29961565   PMID:30013092   PMID:30021165   PMID:30021884   PMID:30093111   PMID:30111582   PMID:30142967   PMID:30200150   PMID:30217970   PMID:30230921   PMID:30279205   PMID:30287853  
PMID:30401746   PMID:30631154   PMID:30639287   PMID:30804502   PMID:30808708   PMID:30877334   PMID:30890647   PMID:30928430   PMID:31048545   PMID:31076518   PMID:31140879   PMID:31230402  
PMID:31267705   PMID:31278385   PMID:31330532   PMID:31454269   PMID:31470122   PMID:31483676   PMID:31501420   PMID:31586073   PMID:31682223   PMID:31724397   PMID:31763755   PMID:31914408  
PMID:31980649   PMID:31983428   PMID:31991573   PMID:32012279   PMID:32186935   PMID:32296183   PMID:32317284   PMID:32408024   PMID:32554053   PMID:32780723   PMID:32786267   PMID:32807901  
PMID:32814769   PMID:32850835   PMID:32948286   PMID:33080786   PMID:33321095   PMID:33338532   PMID:33634591  


Genomics

Comparative Map Data
CALM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1490,396,502 - 90,408,268 (+)EnsemblGRCh38hg38GRCh38
GRCh381490,396,502 - 90,408,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371490,862,846 - 90,874,612 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,933,126 - 89,944,363 (+)NCBINCBI36hg18NCBI36
Build 341489,933,129 - 89,944,148NCBI
Celera1470,910,477 - 70,921,767 (+)NCBI
Cytogenetic Map14q32.11NCBI
HuRef1471,038,153 - 71,049,443 (+)NCBIHuRef
CHM1_11490,801,276 - 90,812,578 (+)NCBICHM1_1
Calm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,165,694 - 100,176,083 (+)NCBIGRCm39mm39
GRCm39 Ensembl12100,165,694 - 100,176,073 (+)Ensembl
GRCm3812100,199,435 - 100,209,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,199,435 - 100,209,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,437,751 - 101,448,016 (+)NCBIGRCm37mm9NCBIm37
MGSCv3612100,600,591 - 100,610,856 (+)NCBImm8
Celera12101,426,181 - 101,436,442 (+)NCBICelera
Cytogenetic Map12ENCBI
Calm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26119,487,691 - 119,495,759 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6119,487,621 - 119,498,227 (+)Ensembl
Rnor_6.06124,217,241 - 124,225,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,217,241 - 124,225,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06133,444,207 - 133,452,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,477,601 - 124,485,669 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16124,481,414 - 124,491,549 (+)NCBI
Celera6117,015,915 - 117,023,918 (+)NCBICelera
Cytogenetic Map6q32NCBI
Calm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,842,437 - 12,854,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,842,437 - 12,854,028 (+)NCBIChiLan1.0ChiLan1.0
CALM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11490,367,086 - 90,378,361 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,121,687 - 52,131,135 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01471,015,099 - 71,026,322 (+)NCBIMhudiblu_PPA_v0panPan3
CALM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1861,398,231 - 61,408,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl861,398,244 - 61,406,195 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha860,978,989 - 60,989,622 (+)NCBI
ROS_Cfam_1.0861,672,887 - 61,680,835 (+)NCBI
UMICH_Zoey_3.1861,353,922 - 61,364,539 (+)NCBI
UNSW_CanFamBas_1.0861,402,765 - 61,413,376 (+)NCBI
UU_Cfam_GSD_1.0861,731,734 - 61,739,644 (+)NCBI
Calm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,480,463 - 14,488,619 (-)NCBI
SpeTri2.0NW_00493648817,580,425 - 17,588,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,154,880 - 112,171,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,160,823 - 112,171,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,728,008 - 118,738,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12468,133,446 - 68,145,117 (+)NCBI
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)Ensembl
Vero_WHO_p1.0NW_02366605355,415,057 - 55,426,335 (+)NCBI
Calm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473412,030,264 - 12,041,682 (-)NCBI

Position Markers
RH70561  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,871,837 - 90,872,096UniSTSGRCh37
Build 361489,941,590 - 89,941,849RGDNCBI36
Celera1470,918,985 - 70,919,245RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,046,661 - 71,046,921UniSTS
GeneMap99-GB4 RH Map14236.09UniSTS
RH11167  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,321 - 90,874,451UniSTSGRCh37
Build 361489,944,074 - 89,944,204RGDNCBI36
Celera1470,921,469 - 70,921,599RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,049,145 - 71,049,275UniSTS
GeneMap99-GB4 RH Map14236.19UniSTS
G54145  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,871,394 - 90,871,555UniSTSGRCh37
GRCh37X94,755,363 - 94,755,524UniSTSGRCh37
Build 36X94,642,019 - 94,642,180RGDNCBI36
CeleraX95,279,996 - 95,280,157RGD
Celera1470,918,542 - 70,918,703UniSTS
Cytogenetic Map14q32.11UniSTS
HuRef1471,046,218 - 71,046,379UniSTS
D14S89E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,536 - 90,872,629UniSTSGRCh37
GRCh371490,872,605 - 90,872,797UniSTSGRCh37
GRCh371490,872,763 - 90,872,862UniSTSGRCh37
Build 361489,942,516 - 89,942,615RGDNCBI36
Celera1470,919,753 - 70,919,945UniSTS
Celera1470,919,911 - 70,920,010RGD
Celera1470,919,684 - 70,919,777UniSTS
Cytogenetic Map14q32.11UniSTS
HuRef1471,047,587 - 71,047,686UniSTS
HuRef1471,047,429 - 71,047,621UniSTS
HuRef1471,047,360 - 71,047,453UniSTS
TNG Radiation Hybrid Map1435712.0UniSTS
Stanford-G3 RH Map143193.0UniSTS
NCBI RH Map14940.2UniSTS
GeneMap99-G3 RH Map143742.0UniSTS
D14S98E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,077 - 90,872,154UniSTSGRCh37
GRCh371490,871,958 - 90,872,197UniSTSGRCh37
Build 361489,941,830 - 89,941,907RGDNCBI36
Celera1470,919,226 - 70,919,303RGD
Celera1470,919,107 - 70,919,346UniSTS
Cytogenetic Map14q32.11UniSTS
HuRef1471,046,902 - 71,046,979UniSTS
HuRef1471,046,783 - 71,047,022UniSTS
TNG Radiation Hybrid Map1435712.0UniSTS
Stanford-G3 RH Map143186.0UniSTS
NCBI RH Map14939.8UniSTS
GeneMap99-G3 RH Map143735.0UniSTS
D14S642E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,540 - 90,872,644UniSTSGRCh37
Build 361489,942,293 - 89,942,397RGDNCBI36
Celera1470,919,688 - 70,919,792RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,047,364 - 71,047,468UniSTS
GeneMap99-GB4 RH Map14236.19UniSTS
RH130082  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,452 - 90,874,602UniSTSGRCh37
Build 361489,944,205 - 89,944,355RGDNCBI36
Celera1470,921,600 - 70,921,750RGD
HuRef1471,049,276 - 71,049,426UniSTS
SSC3C06  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,325 - 90,874,528UniSTSGRCh37
Build 361489,944,078 - 89,944,281RGDNCBI36
Celera1470,921,473 - 70,921,676RGD
HuRef1471,049,149 - 71,049,352UniSTS
G06214  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,133 - 90,874,340UniSTSGRCh37
Build 361489,943,886 - 89,944,093RGDNCBI36
Celera1470,921,281 - 70,921,488RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,048,957 - 71,049,164UniSTS
RH11243  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,191 - 90,874,340UniSTSGRCh37
Build 361489,943,944 - 89,944,093RGDNCBI36
Celera1470,921,339 - 70,921,488RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,049,015 - 71,049,164UniSTS
GeneMap99-GB4 RH Map14236.19UniSTS
NCBI RH Map14935.0UniSTS
SHGC-30527  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,085 - 90,872,234UniSTSGRCh37
Build 361489,941,838 - 89,941,987RGDNCBI36
Celera1470,919,234 - 70,919,383RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,046,910 - 71,047,059UniSTS
TNG Radiation Hybrid Map1435712.0UniSTS
GeneMap99-GB4 RH Map14236.09UniSTS
Whitehead-RH Map14313.7UniSTS
GeneMap99-G3 RH Map143720.0UniSTS
WI-18834  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,871,536 - 90,871,678UniSTSGRCh37
Build 361489,941,289 - 89,941,431RGDNCBI36
Celera1470,918,684 - 70,918,826RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,046,360 - 71,046,502UniSTS
GeneMap99-GB4 RH Map14236.19UniSTS
Whitehead-RH Map14313.7UniSTS
D14S901  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,194 - 90,874,295UniSTSGRCh37
Build 361489,943,947 - 89,944,048RGDNCBI36
Celera1470,921,342 - 70,921,443RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,049,018 - 71,049,119UniSTS
GeneMap99-GB4 RH Map14235.8UniSTS
NCBI RH Map14935.0UniSTS
1928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,635 - 90,872,735UniSTSGRCh37
Build 361489,942,388 - 89,942,488RGDNCBI36
Celera1470,919,783 - 70,919,883RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,047,459 - 71,047,559UniSTS
GeneMap99-GB4 RH Map14235.99UniSTS
NCBI RH Map14935.0UniSTS
IB3608  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,435 - 90,874,600UniSTSGRCh37
Build 361489,944,188 - 89,944,353RGDNCBI36
Celera1470,921,583 - 70,921,748RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,049,259 - 71,049,424UniSTS
GeneMap99-GB4 RH Map14236.19UniSTS
Whitehead-RH Map14313.6UniSTS
D14S1231  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,872,642 - 90,872,750UniSTSGRCh37
Build 361489,942,395 - 89,942,503RGDNCBI36
Celera1470,919,790 - 70,919,898RGD
Cytogenetic Map14q32.11UniSTS
HuRef1471,047,466 - 71,047,574UniSTS
Whitehead-YAC Contig Map14 UniSTS
EST13B3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,874,306 - 90,874,516UniSTSGRCh37
Build 361489,944,059 - 89,944,269RGDNCBI36
Celera1470,921,454 - 70,921,664RGD
HuRef1471,049,130 - 71,049,340UniSTS
GDB:433805  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,870,220 - 90,870,786UniSTSGRCh37
Celera1470,917,368 - 70,917,934UniSTS
Cytogenetic Map14q32.11UniSTS
HuRef1471,045,044 - 71,045,610UniSTS
CALM1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,871,084 - 90,871,908UniSTSGRCh37
Celera1470,918,232 - 70,919,056UniSTS
HuRef1471,046,215 - 71,046,365UniSTS
HuRef1471,045,908 - 71,046,732UniSTS
D14S98E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q32.11UniSTS
D14S89E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q32.11UniSTS
D14S89E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q32.11UniSTS
TNG Radiation Hybrid Map1435712.0UniSTS
Stanford-G3 RH Map143193.0UniSTS
NCBI RH Map14940.2UniSTS
GeneMap99-G3 RH Map143742.0UniSTS
CALM1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371490,871,084 - 90,871,908UniSTSGRCh37
Celera1470,918,232 - 70,919,056UniSTS
HuRef1471,046,215 - 71,046,365UniSTS
HuRef1471,045,908 - 71,046,732UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3299
Count of miRNA genes:1105
Interacting mature miRNAs:1367
Transcripts:ENST00000356978, ENST00000447653, ENST00000544280, ENST00000553422, ENST00000553542, ENST00000553630, ENST00000553964, ENST00000553995, ENST00000554296, ENST00000555132, ENST00000555267, ENST00000556721, ENST00000556757, ENST00000557020, ENST00000557123
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High 1 1 10 10 1495 10
Medium 4429 5892 2838 775 2360 451 8096 4236 5593 220 2224 2462 324 2408 5562
Low 10 1 1 6 1 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI651063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU122722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY189287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX479707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX482177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA059080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000356978   ⟹   ENSP00000349467
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,029 - 90,408,268 (+)Ensembl
RefSeq Acc Id: ENST00000447653   ⟹   ENSP00000403491
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,029 - 90,405,072 (+)Ensembl
RefSeq Acc Id: ENST00000544280   ⟹   ENSP00000442853
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,398,262 - 90,405,107 (+)Ensembl
RefSeq Acc Id: ENST00000553422   ⟹   ENSP00000450425
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,401,333 - 90,404,833 (+)Ensembl
RefSeq Acc Id: ENST00000553542   ⟹   ENSP00000450829
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,056 - 90,405,048 (+)Ensembl
RefSeq Acc Id: ENST00000553630   ⟹   ENSP00000451646
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,040 - 90,405,603 (+)Ensembl
RefSeq Acc Id: ENST00000553964
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,932 - 90,404,807 (+)Ensembl
RefSeq Acc Id: ENST00000553995
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,032 - 90,404,067 (+)Ensembl
RefSeq Acc Id: ENST00000554296
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,403,632 - 90,404,746 (+)Ensembl
RefSeq Acc Id: ENST00000555132
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,032 - 90,398,803 (+)Ensembl
RefSeq Acc Id: ENST00000555267
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,399,978 - 90,404,153 (+)Ensembl
RefSeq Acc Id: ENST00000556721
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,404,168 - 90,404,785 (+)Ensembl
RefSeq Acc Id: ENST00000556757
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,032 - 90,401,613 (+)Ensembl
RefSeq Acc Id: ENST00000557020   ⟹   ENSP00000451062
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,396,502 - 90,404,496 (+)Ensembl
RefSeq Acc Id: ENST00000557123
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,032 - 90,400,431 (+)Ensembl
RefSeq Acc Id: ENST00000626705   ⟹   ENSP00000486402
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,032 - 90,405,607 (+)Ensembl
RefSeq Acc Id: ENST00000659177   ⟹   ENSP00000499421
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,397,692 - 90,404,760 (+)Ensembl
RefSeq Acc Id: ENST00000663135   ⟹   ENSP00000499498
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1490,399,065 - 90,404,965 (+)Ensembl
RefSeq Acc Id: NM_001363669   ⟹   NP_001350598
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381490,396,502 - 90,408,268 (+)NCBI
RefSeq Acc Id: NM_001363670   ⟹   NP_001350599
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381490,398,167 - 90,408,268 (+)NCBI
RefSeq Acc Id: NM_006888   ⟹   NP_008819
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381490,397,029 - 90,408,268 (+)NCBI
GRCh371490,863,327 - 90,874,619 (+)ENTREZGENE
Build 361489,933,126 - 89,944,363 (+)NCBI Archive
HuRef1471,038,153 - 71,049,443 (+)ENTREZGENE
CHM1_11490,801,276 - 90,812,578 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_008819   ⟸   NM_006888
- Peptide Label: isoform 2
- UniProtKB: P0DP25 (UniProtKB/Swiss-Prot),   P0DP24 (UniProtKB/Swiss-Prot),   P0DP23 (UniProtKB/Swiss-Prot),   B4DJ51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001350598   ⟸   NM_001363669
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001350599   ⟸   NM_001363670
- Peptide Label: isoform 1
RefSeq Acc Id: ENSP00000451062   ⟸   ENST00000557020
RefSeq Acc Id: ENSP00000442853   ⟸   ENST00000544280
RefSeq Acc Id: ENSP00000499498   ⟸   ENST00000663135
RefSeq Acc Id: ENSP00000486402   ⟸   ENST00000626705
RefSeq Acc Id: ENSP00000403491   ⟸   ENST00000447653
RefSeq Acc Id: ENSP00000499421   ⟸   ENST00000659177
RefSeq Acc Id: ENSP00000349467   ⟸   ENST00000356978
RefSeq Acc Id: ENSP00000450829   ⟸   ENST00000553542
RefSeq Acc Id: ENSP00000451646   ⟸   ENST00000553630
RefSeq Acc Id: ENSP00000450425   ⟸   ENST00000553422
Protein Domains
EF-hand

Promoters
RGD ID:6791353
Promoter ID:HG_KWN:19989
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_006888,   UC010ATQ.1,   UC010ATR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361489,932,861 - 89,933,361 (+)MPROMDB
RGD ID:6851192
Promoter ID:EP73392
Type:single initiation site
Name:HS_CALM1
Description:Calmodulin 1 (phosphorylase kinase, delta).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361489,933,129 - 89,933,189EPD
RGD ID:6791352
Promoter ID:HG_KWN:19990
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001166106
Position:
Human AssemblyChrPosition (strand)Source
Build 361489,933,801 - 89,934,747 (+)MPROMDB
RGD ID:6810672
Promoter ID:HG_ACW:24086
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour
Transcripts:CALM1.JAPR07,   SHOPAR.AAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361489,937,161 - 89,937,661 (+)MPROMDB
RGD ID:7228361
Promoter ID:EPDNEW_H19926
Type:initiation region
Name:CALM1_1
Description:calmodulin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381490,397,029 - 90,397,089EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_006888.6(CALM1):c.161A>T (p.Asn54Ile) single nucleotide variant Catecholaminergic polymorphic ventricular tachycardia type 1 [RCV000157133]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000032976] Chr14:90401385 [GRCh38]
Chr14:90867729 [GRCh37]
Chr14:14q32.11
pathogenic|likely pathogenic
NM_006888.6(CALM1):c.293A>G (p.Asn98Ser) single nucleotide variant Catecholaminergic polymorphic ventricular tachycardia [RCV000714909]|Catecholaminergic polymorphic ventricular tachycardia type 1 [RCV000157134]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000032977]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000526484] Chr14:90404386 [GRCh38]
Chr14:90870730 [GRCh37]
Chr14:14q32.11
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
GRCh38/hg38 14q32.11-32.13(chr14:90255156-95274696)x1 copy number loss See cases [RCV000051551] Chr14:90255156..95274696 [GRCh38]
Chr14:90721500..95741033 [GRCh37]
Chr14:89791253..94810786 [NCBI36]
Chr14:14q32.11-32.13
pathogenic
GRCh38/hg38 14q24.2-32.2(chr14:72787506-99596719)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]|See cases [RCV000052293] Chr14:72787506..99596719 [GRCh38]
Chr14:73254214..100063056 [GRCh37]
Chr14:72323967..99132809 [NCBI36]
Chr14:14q24.2-32.2
pathogenic
GRCh38/hg38 14q31.3-32.33(chr14:86094030-106832642)x3 copy number gain See cases [RCV000052295] Chr14:86094030..106832642 [GRCh38]
Chr14:86560374..107240869 [GRCh37]
Chr14:85630127..106311914 [NCBI36]
Chr14:14q31.3-32.33
pathogenic
GRCh38/hg38 14q31.2-32.33(chr14:83912345-106855405)x3 copy number gain See cases [RCV000052294] Chr14:83912345..106855405 [GRCh38]
Chr14:84378689..107263620 [GRCh37]
Chr14:83448442..106334665 [NCBI36]
Chr14:14q31.2-32.33
pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3 copy number gain See cases [RCV000134000] Chr14:73655772..106879298 [GRCh38]
Chr14:74122475..107287505 [GRCh37]
Chr14:73192228..106358550 [NCBI36]
Chr14:14q24.3-32.33
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:77222795-106879298)x3 copy number gain See cases [RCV000138230] Chr14:77222795..106879298 [GRCh38]
Chr14:77689138..107287505 [GRCh37]
Chr14:76758891..106358550 [NCBI36]
Chr14:14q24.3-32.33
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
NM_006888.6(CALM1):c.421+16C>G single nucleotide variant not provided [RCV000149484] Chr14:90404530 [GRCh38]
Chr14:90870874 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.72C>T (p.Gly24=) single nucleotide variant Cardiovascular phenotype [RCV000620499]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000652516]|not provided [RCV000149485] Chr14:90401296 [GRCh38]
Chr14:90867640 [GRCh37]
Chr14:14q32.11
benign|likely benign|uncertain significance
NM_006888.6(CALM1):c.389A>G (p.Asp130Gly) single nucleotide variant Long QT syndrome 14 [RCV000162062] Chr14:90404482 [GRCh38]
Chr14:90870826 [GRCh37]
Chr14:14q32.11
pathogenic
NM_006888.6(CALM1):c.426C>G (p.Phe142Leu) single nucleotide variant Long QT syndrome 14 [RCV000162063] Chr14:90404693 [GRCh38]
Chr14:90871037 [GRCh37]
Chr14:14q32.11
pathogenic
NM_006888.6(CALM1):c.268T>C (p.Phe90Leu) single nucleotide variant Long QT syndrome 14 [RCV000162064] Chr14:90403951 [GRCh38]
Chr14:90870295 [GRCh37]
Chr14:14q32.11
pathogenic|likely pathogenic
NM_006888.6(CALM1):c.157A>G (p.Ile53Val) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000548067] Chr14:90401381 [GRCh38]
Chr14:90867725 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.179-15del deletion not specified [RCV000603916] Chr14:90403847 [GRCh38]
Chr14:90870191 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.69T>C (p.Asp23=) single nucleotide variant Cardiovascular phenotype [RCV000621045]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000530152] Chr14:90401293 [GRCh38]
Chr14:90867637 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.424T>C (p.Phe142Leu) single nucleotide variant not provided [RCV000489543] Chr14:90404691 [GRCh38]
Chr14:90871035 [GRCh37]
Chr14:14q32.11
likely pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
NM_006888.6(CALM1):c.313G>A (p.Glu105Lys) single nucleotide variant not provided [RCV000442999] Chr14:90404406 [GRCh38]
Chr14:90870750 [GRCh37]
Chr14:14q32.11
likely pathogenic
NM_006888.6(CALM1):c.18C>T (p.Thr6=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001495669]|not provided [RCV000868494]|not specified [RCV000428211] Chr14:90400079 [GRCh38]
Chr14:90866423 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.4-10C>G single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000652518]|not specified [RCV000443194] Chr14:90400055 [GRCh38]
Chr14:90866399 [GRCh37]
Chr14:14q32.11
benign|likely benign
NM_006888.6(CALM1):c.178+18A>G single nucleotide variant not specified [RCV000432574] Chr14:90401420 [GRCh38]
Chr14:90867764 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.324C>T (p.His108=) single nucleotide variant Cardiovascular phenotype [RCV000621603]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000556220]|not specified [RCV000440071] Chr14:90404417 [GRCh38]
Chr14:90870761 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.88A>C (p.Thr30Pro) single nucleotide variant not provided [RCV000431318] Chr14:90401312 [GRCh38]
Chr14:90867656 [GRCh37]
Chr14:14q32.11
likely pathogenic
GRCh37/hg19 14q23.2-32.33(chr14:62493932-107285437)x3 copy number gain See cases [RCV000448557] Chr14:62493932..107285437 [GRCh37]
Chr14:14q23.2-32.33
pathogenic
NM_006888.6(CALM1):c.421+7_421+10del deletion not specified [RCV000483518] Chr14:90404519..90404522 [GRCh38]
Chr14:90870863..90870866 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.-37_-36dup duplication not specified [RCV000483763] Chr14:90397192..90397193 [GRCh38]
Chr14:90863536..90863537 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.67G>T (p.Asp23Tyr) single nucleotide variant not provided [RCV000483941] Chr14:90401291 [GRCh38]
Chr14:90867635 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.419A>T (p.Glu140Val) single nucleotide variant not provided [RCV000483471] Chr14:90404512 [GRCh38]
Chr14:90870856 [GRCh37]
Chr14:14q32.11
likely pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437) copy number gain See cases [RCV000512041] Chr14:20511673..107285437 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
NM_006888.6(CALM1):c.78C>T (p.Gly26=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000540449] Chr14:90401302 [GRCh38]
Chr14:90867646 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.303C>T (p.Ile101=) single nucleotide variant Cardiovascular phenotype [RCV000618235]|Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000541358]|not provided [RCV000615644] Chr14:90404396 [GRCh38]
Chr14:90870740 [GRCh37]
Chr14:14q32.11
benign|likely benign
NM_006888.6(CALM1):c.422-16dup duplication not specified [RCV000607409] Chr14:90404672..90404673 [GRCh38]
Chr14:90871016..90871017 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.-32C>T single nucleotide variant not specified [RCV000616131] Chr14:90397199 [GRCh38]
Chr14:90863543 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.35-13del deletion not specified [RCV000614298] Chr14:90401246 [GRCh38]
Chr14:90867590 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.398G>A (p.Gly133Glu) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000652517] Chr14:90404491 [GRCh38]
Chr14:90870835 [GRCh37]
Chr14:14q32.11
likely pathogenic
NM_006888.6(CALM1):c.273A>G (p.Arg91=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000652519] Chr14:90403956 [GRCh38]
Chr14:90870300 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.411C>G (p.Val137=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000652520] Chr14:90404504 [GRCh38]
Chr14:90870848 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.34+19G>T single nucleotide variant not specified [RCV000604632] Chr14:90400114 [GRCh38]
Chr14:90866458 [GRCh37]
Chr14:14q32.11
likely benign
GRCh37/hg19 14q24.2-32.33(chr14:73750741-107285437)x3 copy number gain See cases [RCV000512497] Chr14:73750741..107285437 [GRCh37]
Chr14:14q24.2-32.33
pathogenic
GRCh37/hg19 14q31.2-32.2(chr14:84783137-96908198)x1 copy number loss not provided [RCV000683625] Chr14:84783137..96908198 [GRCh37]
Chr14:14q31.2-32.2
pathogenic
GRCh37/hg19 14q31.2-32.2(chr14:84783523-96907490)x1 copy number loss Deletion syndrome [RCV001004048] Chr14:84783523..96907490 [GRCh37]
Chr14:14q31.2-32.2
pathogenic
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3 copy number gain not provided [RCV000738412] Chr14:19000422..107289053 [GRCh37]
Chr14:14q11.1-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3 copy number gain not provided [RCV000738413] Chr14:19280733..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3 copy number gain not provided [RCV000738414] Chr14:19327823..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
NM_006888.6(CALM1):c.201C>T (p.Pro67=) single nucleotide variant not provided [RCV000967013] Chr14:90403884 [GRCh38]
Chr14:90870228 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.106G>C (p.Val36Leu) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001048231] Chr14:90401330 [GRCh38]
Chr14:90867674 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.179-293C>T single nucleotide variant not provided [RCV000827673] Chr14:90403569 [GRCh38]
Chr14:90869913 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.-86G>A single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001554674]|not provided [RCV000833933] Chr14:90397145 [GRCh38]
Chr14:90863489 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.4-63C>T single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001554796]|not provided [RCV000833934] Chr14:90400002 [GRCh38]
Chr14:90866346 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.4-129A>G single nucleotide variant not provided [RCV000835789] Chr14:90399936 [GRCh38]
Chr14:90866280 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.3+298G>T single nucleotide variant not provided [RCV000829151] Chr14:90397531 [GRCh38]
Chr14:90863875 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.301A>G (p.Ile101Val) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000798107] Chr14:90404394 [GRCh38]
Chr14:90870738 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_001363669.2(CALM1):c.-106+201G>T single nucleotide variant not provided [RCV000843445] Chr14:90396859 [GRCh38]
Chr14:90863203 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.394G>A (p.Asp132Asn) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV000792817] Chr14:90404487 [GRCh38]
Chr14:90870831 [GRCh37]
Chr14:14q32.11
pathogenic
NM_006888.6(CALM1):c.179-88G>A single nucleotide variant not provided [RCV000834241] Chr14:90403774 [GRCh38]
Chr14:90870118 [GRCh37]
Chr14:14q32.11
likely benign
NM_001363669.2(CALM1):c.-106+183C>T single nucleotide variant not provided [RCV000829147] Chr14:90396841 [GRCh38]
Chr14:90863185 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.3+293C>T single nucleotide variant not provided [RCV000843457] Chr14:90397526 [GRCh38]
Chr14:90863870 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.-168C>T single nucleotide variant not provided [RCV000838758] Chr14:90397063 [GRCh38]
Chr14:90863407 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.34+29G>A single nucleotide variant not provided [RCV000835790] Chr14:90400124 [GRCh38]
Chr14:90866468 [GRCh37]
Chr14:14q32.11
benign
NM_001363669.2(CALM1):c.-106+33G>T single nucleotide variant not provided [RCV000832770] Chr14:90396691 [GRCh38]
Chr14:90863035 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.422A>T (p.Glu141Val) single nucleotide variant Long QT syndrome 14 [RCV001250792] Chr14:90404689 [GRCh38]
Chr14:90871033 [GRCh37]
Chr14:14q32.11
pathogenic
NM_006888.6(CALM1):c.426C>A (p.Phe142Leu) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001235389] Chr14:90404693 [GRCh38]
Chr14:90871037 [GRCh37]
Chr14:14q32.11
pathogenic
NM_006888.6(CALM1):c.286-141A>C single nucleotide variant not provided [RCV001549661] Chr14:90404238 [GRCh38]
Chr14:90870582 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.3+331C>A single nucleotide variant not provided [RCV001570915] Chr14:90397564 [GRCh38]
Chr14:90863908 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.395A>T (p.Asp132Val) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001219455] Chr14:90404488 [GRCh38]
Chr14:90870832 [GRCh37]
Chr14:14q32.11
pathogenic
NM_001363669.2(CALM1):c.-106+211G>C single nucleotide variant not provided [RCV001564509] Chr14:90396869 [GRCh38]
Chr14:90863213 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.178+269del deletion not provided [RCV001550606] Chr14:90401655 [GRCh38]
Chr14:90867999 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.35-290_35-288del deletion not provided [RCV001566627] Chr14:90400957..90400959 [GRCh38]
Chr14:90867301..90867303 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.280G>C (p.Asp94His) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001216383] Chr14:90403963 [GRCh38]
Chr14:90870307 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.422A>G (p.Glu141Gly) single nucleotide variant Long QT syndrome 14 [RCV001250791] Chr14:90404689 [GRCh38]
Chr14:90871033 [GRCh37]
Chr14:14q32.11
pathogenic
GRCh37/hg19 14q32.11(chr14:90648169-91222138)x3 copy number gain not provided [RCV001259793] Chr14:90648169..91222138 [GRCh37]
Chr14:14q32.11
uncertain significance
NC_000014.8:g.(?_90870713)_(90871071_?)dup duplication Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001372387] Chr14:90870713..90871071 [GRCh37]
Chr14:14q32.11
uncertain significance
NM_006888.6(CALM1):c.90A>C (p.Thr30=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001471704] Chr14:90401314 [GRCh38]
Chr14:90867658 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.426C>T (p.Phe142=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001452878] Chr14:90404693 [GRCh38]
Chr14:90871037 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.421+6dup duplication Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001409753] Chr14:90404516..90404517 [GRCh38]
Chr14:90870860..90870861 [GRCh37]
Chr14:14q32.11
likely benign
NM_006888.6(CALM1):c.267A>G (p.Ala89=) single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001460258] Chr14:90403950 [GRCh38]
Chr14:90870294 [GRCh37]
Chr14:14q32.11
likely benign
NM_001363669.2(CALM1):c.-106+355C>T single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001510397] Chr14:90397013 [GRCh38]
Chr14:90863357 [GRCh37]
Chr14:14q32.11
benign
NM_006888.6(CALM1):c.4-9T>A single nucleotide variant Ventricular tachycardia, catecholaminergic polymorphic, 4 [RCV001404174] Chr14:90400056 [GRCh38]
Chr14:90866400 [GRCh37]
Chr14:14q32.11
likely benign

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1442 AgrOrtholog
COSMIC CALM1 COSMIC
Ensembl Genes ENSG00000143933 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000160014 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000198668 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000272298 UniProtKB/Swiss-Prot
  ENSP00000291295 UniProtKB/Swiss-Prot
  ENSP00000349467 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000442853 ENTREZGENE
  ENSP00000450425 UniProtKB/TrEMBL
  ENSP00000451062 UniProtKB/TrEMBL
  ENSP00000451646 UniProtKB/TrEMBL
  ENSP00000470308 UniProtKB/TrEMBL
  ENSP00000472141 UniProtKB/Swiss-Prot
  ENSP00000486402 UniProtKB/TrEMBL
  ENSP00000486952 UniProtKB/TrEMBL
Ensembl Transcript ENST00000272298 UniProtKB/Swiss-Prot
  ENST00000291295 UniProtKB/Swiss-Prot
  ENST00000356978 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000544280 ENTREZGENE
  ENST00000553422 UniProtKB/TrEMBL
  ENST00000553630 UniProtKB/TrEMBL
  ENST00000557020 UniProtKB/TrEMBL
  ENST00000596362 UniProtKB/Swiss-Prot
  ENST00000597743 UniProtKB/TrEMBL
  ENST00000626705 UniProtKB/TrEMBL
  ENST00000628793 UniProtKB/TrEMBL
GTEx ENSG00000143933 GTEx
  ENSG00000160014 GTEx
  ENSG00000198668 GTEx
HGNC ID HGNC:1442 ENTREZGENE
Human Proteome Map CALM1 Human Proteome Map
InterPro Calmodulin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:801 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hsa:805 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hsa:808 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 801 ENTREZGENE
OMIM 114180 OMIM
  614916 OMIM
  616247 OMIM
PANTHER PTHR23050:SF401 UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
PharmGKB PA26035 PharmGKB
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DJ51 ENTREZGENE, UniProtKB/TrEMBL
  CALM1_HUMAN UniProtKB/Swiss-Prot
  CALM2_HUMAN UniProtKB/Swiss-Prot
  CALM3_HUMAN UniProtKB/Swiss-Prot
  G3V226_HUMAN UniProtKB/TrEMBL
  G3V361_HUMAN UniProtKB/TrEMBL
  G3V479_HUMAN UniProtKB/TrEMBL
  M0QZ52_HUMAN UniProtKB/TrEMBL
  P0DP23 ENTREZGENE
  P0DP24 ENTREZGENE
  P0DP25 ENTREZGENE
UniProt Secondary P02593 UniProtKB/Swiss-Prot
  P62158 UniProtKB/Swiss-Prot
  P70667 UniProtKB/Swiss-Prot
  P99014 UniProtKB/Swiss-Prot
  Q13942 UniProtKB/Swiss-Prot
  Q53S29 UniProtKB/Swiss-Prot
  Q61379 UniProtKB/Swiss-Prot
  Q61380 UniProtKB/Swiss-Prot
  Q96HK3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-30 CALM1  calmodulin 1    calmodulin 1 (phosphorylase kinase, delta)  Symbol and/or name change 5135510 APPROVED