CALM1 (calmodulin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CALM1 (calmodulin 1) Chlorocebus sabaeus
Analyze
Symbol: CALM1
Name: calmodulin 1
RGD ID: 18410965
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); establishment of protein localization to mitochondrial membrane (ortholog); negative regulation of high voltage-gated calcium channel activity (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; ASSOCIATED WITH achondrogenesis type IA (ortholog); Alzheimer's disease (ortholog); cannabis abuse (ortholog); FOUND IN growth cone (ortholog); mitochondrial membrane (ortholog); postsynaptic cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calmodulin; calmodulin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12468,133,446 - 68,145,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605355,415,057 - 55,426,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green MonkeyAlzheimer's disease  ISORGD:7353699068941protein:decreased expression:cerebellar cortex:RGDPMID:11470324|REF_RGD_ID:13792493
CALM1Green Monkeytype 2 diabetes mellitus  ISORGD:22579068941mRNA:decreased expression:heartRGDPMID:21216827|REF_RGD_ID:6892953
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyachondrogenesis type IA  ISORGD:7353698554872ClinVar Annotator: match by term: Achondrogenesis, type IAClinVarPMID:28492532
CALM1Green Monkeycatecholaminergic polymorphic ventricular tachycardia  ISORGD:7353698554872ClinVar Annotator: match by term: Catecholaminergic polymorphic ventricular tachycardiaClinVarPMID:23040497|PMID:24563457|PMID:24816216|PMID:25557436|PMID:25741868|PMID:26164367|PMID:26309258|PMID:27165696|PMID:28492532|PMID:37380439
CALM1Green Monkeycatecholaminergic polymorphic ventricular tachycardia 1  ISORGD:7353698554872ClinVar Annotator: match by term: Catecholaminergic polymorphic ventricular tachycardia 1ClinVarPMID:23040497|PMID:23388215|PMID:24563457|PMID:24816216|PMID:25557436|PMID:25741868|PMID:26164367|PMID:26309258|PMID:27165696|PMID:28492532|PMID:37380439
CALM1Green Monkeycatecholaminergic polymorphic ventricular tachycardia 4  ISORGD:7353698554872ClinVar Annotator: match by term: Catecholaminergic polymorphic ventricular tachycardia 4ClinVarPMID:11569915|PMID:17576681|PMID:23040497|PMID:23388215|PMID:24563457|PMID:24816216|PMID:24958779|PMID:25557436|PMID:25741868|PMID:26164367|PMID:26309258|PMID:26969752|PMID:27165696|PMID:27374306|PMID:27927985|PMID:28158429|PMID:28492532|PMID:37380439|PMID:9536098
CALM1Green MonkeyFamilial Ventricular Tachycardia  ISORGD:7353698554872ClinVar Annotator: match by term: Familial polymorphic ventricular tachycardiaClinVarPMID:23040497|PMID:24563457|PMID:24816216|PMID:25557436|PMID:25741868|PMID:26164367|PMID:26309258|PMID:27165696|PMID:28492532|PMID:37380439
CALM1Green Monkeylong QT syndrome  ISORGD:7353698554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:25741868|PMID:25741871|PMID:39481677
CALM1Green Monkeylong QT syndrome 14  ISORGD:7353698554872ClinVar Annotator: match by term: Long QT syndrome 14ClinVarPMID:17576681|PMID:23040497|PMID:23388215|PMID:24076290|PMID:24563457|PMID:24816216|PMID:25036739|PMID:25557436|PMID:25741868|PMID:26164367|PMID:26309258|PMID:26969752|PMID:27165696|PMID:28158429|PMID:28492532|PMID:31454269|PMID:37380439|PMID:9536098
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green MonkeyAlzheimer's disease  ISORGD:7353699068941CTD Direct Evidence: marker/mechanismCTDPMID:11470324
CALM1Green Monkeycannabis abuse  ISORGD:7353699068941CTD Direct Evidence: marker/mechanismCTDPMID:17205118
CALM1Green MonkeyCocaine-Related Disorders  ISORGD:7353699068941CTD Direct Evidence: marker/mechanismCTDPMID:17205118
CALM1Green Monkeyphencyclidine abuse  ISORGD:7353699068941CTD Direct Evidence: marker/mechanismCTDPMID:17205118
CALM1Green MonkeyWeight Gain  ISORGD:7353699068941CTD Direct Evidence: marker/mechanismCTDPMID:19030233
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeycatecholaminergic polymorphic ventricular tachycardia 4  ISORGD:7353697240710 OMIM 
CALM1Green Monkeylong QT syndrome 14  ISORGD:7353697240710 OMIM 


Biological Process
1 to 20 of 31 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyautophagosome membrane docking involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalcineurin-mediated signaling involved_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycellular response to interferon-beta involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycellular response to type II interferon involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeydetection of calcium ion involved_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyestablishment of protein localization to membrane involved_inISORGD:22579068941PMID:23792689CAFAPMID:23792689|REF_RGD_ID:12793033
CALM1Green Monkeyestablishment of protein localization to mitochondrial membrane involved_inISORGD:22579068941PMID:23792689CAFAPMID:23792689|REF_RGD_ID:12793033
CALM1Green MonkeyG2/M transition of mitotic cell cycle acts_upstream_of_or_withinIEAUniProtKB:P0DP26|UniProtKB:P0DP27|UniProtKB:P0DP28|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeymitochondrion-endoplasmic reticulum membrane tethering involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeynegative regulation of calcium ion export across plasma membrane involved_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeynegative regulation of high voltage-gated calcium channel activity involved_inISORGD:7353699068941 PMID:31454269UniProtPMID:31454269
CALM1Green Monkeynegative regulation of ryanodine-sensitive calcium-release channel activity involved_inISORGD:7353699068941 PMID:26164367UniProtPMID:26164367
CALM1Green Monkeyorganelle localization by membrane tethering involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeypositive regulation of nitric-oxide synthase activity  ISORGD:22579068941 RGDPMID:20529840|REF_RGD_ID:7241266
CALM1Green Monkeypositive regulation of receptor signaling pathway via JAK-STAT involved_inIEAUniProtKB:P0DP23|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeypresynaptic endocytosis involved_inIEAUniProtKB:P0DP26|UniProtKB:P0DP27|UniProtKB:P0DP28|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyregulation of calcium-mediated signaling acts_upstream_of_or_withinIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyregulation of cardiac muscle cell action potential involved_inIEAUniProtKB:P0DP23|UniProtKB:P0DP25|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyregulation of cardiac muscle contraction involved_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyregulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion involved_inISORGD:7353699068941 PMID:20226167BHF-UCLPMID:20226167
1 to 20 of 31 rows

Cellular Component
1 to 20 of 21 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeycalcium channel complex part_ofIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalyx of Held is_active_inIEAUniProtKB:P0DP26|UniProtKB:P0DP27|UniProtKB:P0DP28|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycatalytic complex part_ofIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycentrosome located_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycytoplasm located_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|ensembl:ENSP00000272298|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeygrowth cone  ISORGD:22579068941 RGDPMID:7492944|REF_RGD_ID:7241258
CALM1Green Monkeymembrane located_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeymitochondrial membrane located_inISORGD:22579068941PMID:23792689CAFAPMID:23792689|REF_RGD_ID:12793033
CALM1Green Monkeymyelin sheath located_inIEAUniProtKB:P0DP26|UniProtKB:P0DP27|UniProtKB:P0DP28|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeymyosin II complex part_ofIEAPANTHER:PTN009059498150520179 TreeGrafterGO_REF:0000118
CALM1Green Monkeypostsynaptic cytosol is_active_inISORGD:22579068941PMID:22848456SynGOPMID:22848456|REF_RGD_ID:12050095
CALM1Green Monkeypresynaptic cytosol is_active_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyprotein-containing complex part_ofIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeysarcomere located_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green MonkeySchaffer collateral - CA1 synapse is_active_inISORGD:22579068941PMID:22848456SynGOPMID:22848456|REF_RGD_ID:12050095
CALM1Green Monkeysperm midpiece located_inIEAUniProtKB:P0DP26|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyspindle microtubule located_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyspindle pole located_inIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeysynaptic vesicle membrane located_inISORGD:22579068941PMID:23792689CAFAPMID:23792689|REF_RGD_ID:12793033
CALM1Green Monkeyvesicle located_inIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
1 to 20 of 21 rows

Molecular Function
1 to 20 of 50 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyadenylate cyclase activator activity enablesIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeyadenylate cyclase binding enablesIEAUniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalcium channel inhibitor activity enablesIEAUniProtKB:P0DP23|UniProtKB:P0DP24|ensembl:ENSP00000272298|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalcium channel regulator activity enablesISORGD:7353699068941 PMID:20226167BHF-UCLPMID:20226167
CALM1Green Monkeycalcium ion binding  ISORGD:22579068941 RGDPMID:15628869|PMID:23109337|REF_RGD_ID:7241220|REF_RGD_ID:7241270
CALM1Green Monkeycalcium ion binding enablesIEAInterPro:IPR002048150520179 InterProGO_REF:0000002
CALM1Green Monkeycalcium ion binding enablesIEAUniProtKB:P0DP23|UniProtKB:P0DP24|UniProtKB:P0DP25|ensembl:ENSP00000272298|ensembl:ENSP00000291295|ensembl:ENSP00000349467150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalcium-dependent protein binding  ISORGD:27459068941 RGDPMID:21855531|REF_RGD_ID:7207139
CALM1Green Monkeycalcium-dependent protein binding enablesIEAUniProtKB:P0DP27|ensembl:ENSMUSP00000019514|ensembl:ENSMUSP00000048857|ensembl:ENSMUSP00000105709150520179 EnsemblGO_REF:0000107
CALM1Green Monkeycalcium-dependent protein binding  ISORGD:7366579068941 RGDPMID:12032157|REF_RGD_ID:634683
CALM1Green Monkeycalcium-dependent protein binding  ISORGD:6198579068941 RGDPMID:21855531|REF_RGD_ID:7207139
CALM1Green Monkeymetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
CALM1Green Monkeynitric-oxide synthase binding  ISORGD:22579068941 RGDPMID:20529840|REF_RGD_ID:7241266
CALM1Green Monkeynitric-oxide synthase regulator activity  ISORGD:22579068941 RGDPMID:20529840|REF_RGD_ID:7241266
CALM1Green Monkeyphosphatidylinositol 3-kinase binding  ISORGD:33299068941 RGDPMID:17492691|REF_RGD_ID:4108506
CALM1Green Monkeyprotein binding enablesISOUniProtKB:Q5JU859068941 PMID:30842726IntActPMID:30842726
CALM1Green Monkeyprotein binding enablesISOUniProtKB:D3YV929068941 PMID:29025071UniProtPMID:29025071
CALM1Green Monkeyprotein binding enablesISOUniProtKB:O00159|UniProtKB:Q5JU859068941 PMID:35271311IntActPMID:35271311
CALM1Green Monkeyprotein binding enablesISOUniProtKB:Q139369068941 PMID:15140941UniProtPMID:15140941
CALM1Green Monkeyprotein binding enablesISOUniProtKB:O433039068941 PMID:16760425UniProtPMID:16760425
1 to 20 of 50 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyadenosine monophosphate-activated protein kinase (AMPK) signaling pathway   ISORGD:7353699068941 RGDPMID:16054095|REF_RGD_ID:2311420
CALM1Green Monkeycalcium/calcium-mediated signaling pathway   ISORGD:7353699068941 RGDPMID:10884684|PMID:18083096|REF_RGD_ID:7204676|REF_RGD_ID:7204677
CALM1Green Monkeycalcium/calmodulin dependent kinase 2 signaling pathway   ISORGD:7353699068941 RGDPMID:22717267|PMID:23091085|REF_RGD_ID:7240705|REF_RGD_ID:7240708
CALM1Green Monkeyglycogen degradation pathway   ISORGD:7353699068941 RGDPMID:10487978|REF_RGD_ID:2305981

Imported Annotations - SMPDB

1 to 20 of 38 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyacebutolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00296
CALM1Green Monkeyadrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway   ISORGD:7353699068941 SMPDBSMP:00296
CALM1Green Monkeyamiodarone pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00665
CALM1Green Monkeyamlodipine pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00376
CALM1Green Monkeyatenolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00298
CALM1Green Monkeybetaxolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00299
CALM1Green Monkeybisoprolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00300
CALM1Green Monkeybupranolol drug pathway  ISORGD:7353699068941 SMPDBSMP:00670
CALM1Green Monkeybupranolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00670
CALM1Green Monkeycarvedilol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00367
CALM1Green Monkeydiltiazem pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00359
CALM1Green Monkeydisopyramide pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00325
CALM1Green Monkeydobutamine pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00662
CALM1Green Monkeyesmolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00301
CALM1Green Monkeyflecainde pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00331
CALM1Green Monkeyfosphenytoin pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00326
CALM1Green Monkeyibutilide pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00332
CALM1Green Monkeyisoprenaline pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00663
CALM1Green Monkeyisradipine pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00378
CALM1Green Monkeylevobunolol pharmacodynamics pathway  ISORGD:7353699068941 SMPDBSMP:00666
1 to 20 of 38 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CALM1Green Monkeyinsulin responsive facilitative sugar transporter mediated glucose transport pathway   ISORGD:7353699068941 PIDPID:200196
CALM1Green MonkeyN-cadherin signaling pathway  ISORGD:7353699068941 PIDPID:200209
CALM1Green Monkeyp38 MAPK signaling pathway   ISORGD:7353699068941 PIDPID:200018
CALM1Green Monkeytype II interferon signaling pathway  ISORGD:7353699068941 PIDPID:200129
CALM1Green Monkeyvascular endothelial growth factor signaling pathway   ISORGD:7353699068941 PIDPID:200188
PMID:22301074   PMID:30032202  



CALM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12468,133,446 - 68,145,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605355,415,057 - 55,426,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CALM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381490,396,502 - 90,408,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1490,396,502 - 90,408,268 (+)EnsemblGRCh38hg38GRCh38
GRCh371490,862,846 - 90,874,612 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,933,126 - 89,944,363 (+)NCBINCBI36Build 36hg18NCBI36
Build 341489,933,129 - 89,944,148NCBI
Celera1470,910,477 - 70,921,767 (+)NCBICelera
Cytogenetic Map14q32.11NCBI
HuRef1471,038,153 - 71,049,443 (+)NCBIHuRef
CHM1_11490,801,276 - 90,812,578 (+)NCBICHM1_1
T2T-CHM13v2.01484,621,229 - 84,632,993 (+)NCBIT2T-CHM13v2.0
Calm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912100,165,694 - 100,176,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12100,165,694 - 100,176,073 (+)EnsemblGRCm39 Ensembl
GRCm3812100,199,435 - 100,209,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12100,199,435 - 100,209,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,437,751 - 101,448,016 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612100,600,591 - 100,610,856 (+)NCBIMGSCv36mm8
Celera12101,426,181 - 101,436,442 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1250.43NCBI
Calm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86125,217,191 - 125,227,855 (+)NCBIGRCr8
mRatBN7.26119,487,691 - 119,495,759 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6119,487,621 - 119,498,227 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6119,649,410 - 119,657,616 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06119,946,208 - 119,954,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06119,281,076 - 119,289,141 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06124,217,241 - 124,225,292 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,217,241 - 124,225,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06133,444,207 - 133,452,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,477,601 - 124,485,669 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16124,481,414 - 124,491,549 (+)NCBI
Celera6117,015,915 - 117,023,918 (+)NCBICelera
Cytogenetic Map6q32NCBI
Calm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,842,437 - 12,854,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,842,437 - 12,854,028 (+)NCBIChiLan1.0ChiLan1.0
CALM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21591,541,950 - 91,553,249 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11490,758,463 - 90,769,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01471,015,099 - 71,026,322 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11490,367,086 - 90,378,361 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,121,687 - 52,131,135 (+)Ensemblpanpan1.1panPan2
CALM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1861,398,231 - 61,408,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl861,398,244 - 61,406,195 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha860,978,989 - 60,989,622 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0861,672,887 - 61,680,835 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl861,672,892 - 61,683,535 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1861,353,922 - 61,364,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0861,402,765 - 61,413,376 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0861,731,734 - 61,739,644 (+)NCBIUU_Cfam_GSD_1.0
Calm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864014,480,463 - 14,488,619 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648817,580,454 - 17,588,507 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648817,580,425 - 17,588,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7112,160,806 - 112,171,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17112,160,823 - 112,171,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,728,008 - 118,738,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Calm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473412,030,001 - 12,041,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473412,030,264 - 12,041,682 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CALM1
178 total Variants

1 to 10 of 543 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh37/hg19 22q11.21(chr22:18915347-21463730)x1 copy number loss VATER association [RCV000520380] Chr22:18915347..21463730 [GRCh37]
Chr22:22q11.21		 likely pathogenic
GRCh37/hg19 22q11.21(chr22:18894835-21464119) copy number gain Global developmental delay [RCV001291954] Chr22:18894835..21464119 [GRCh37]
Chr22:22q11.21		 pathogenic
GRCh37/hg19 22q11.21(chr22:18894835-20311763) copy number loss Astigmatism [RCV000626527] Chr22:18894835..20311763 [GRCh37]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21207225)x3 copy number gain See cases [RCV000050271] Chr22:18339130..21207225 [GRCh38]
Chr22:18919942..21561514 [GRCh37]
Chr22:17299942..19891514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21207225)x1 copy number loss See cases [RCV000050273] Chr22:18339130..21207225 [GRCh38]
Chr22:18919942..21561514 [GRCh37]
Chr22:17299942..19891514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-20671425)x1 copy number loss See cases [RCV000050290] Chr22:18339130..20671425 [GRCh38]
Chr22:18706001..21025713 [GRCh37]
Chr22:17086001..19355713 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21086225)x3 copy number gain See cases [RCV000050991] Chr22:18339130..21086225 [GRCh38]
Chr22:18919942..21440514 [GRCh37]
Chr22:17299942..19770514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.21(chr22:18339130-21086225)x1 copy number loss See cases [RCV000050992] Chr22:18339130..21086225 [GRCh38]
Chr22:18919942..21440514 [GRCh37]
Chr22:17299942..19770514 [NCBI36]
Chr22:22q11.21		 pathogenic
GRCh38/hg38 22q11.1-11.21(chr22:16916608-20324240)x3 copy number gain See cases [RCV000050858] Chr22:16916608..20324240 [GRCh38]
Chr22:17397498..20311763 [GRCh37]
Chr22:15777498..18691763 [NCBI36]
Chr22:22q11.1-11.21		 pathogenic
GRCh38/hg38 22q11.1-11.21(chr22:16916608-20324240)x1 copy number loss See cases [RCV000050859] Chr22:16916608..20324240 [GRCh38]
Chr22:17397498..20311763 [GRCh37]
Chr22:15777498..18691763 [NCBI36]
Chr22:22q11.1-11.21		 pathogenic
1 to 10 of 543 rows



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


RefSeq Transcripts XM_007987572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000009526   ⟹   ENSCSAP00000007641
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2468,133,428 - 68,145,180 (+)Ensembl
RefSeq Acc Id: XM_007987572   ⟹   XP_007985763
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12468,133,446 - 68,145,117 (+)NCBI
Vero_WHO_p1.0NW_02366605355,415,057 - 55,426,335 (+)NCBI
Sequence:
Protein RefSeqs XP_007985763 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007641
  ENSCSAP00000007641.1
  ENSCSAP00000009715.1
  ENSCSAP00000014992
  ENSCSAP00000014992.1
RefSeq Acc Id: XP_007985763   ⟸   XM_007987572
- UniProtKB: A0A0D9S2A3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007641   ⟸   ENSCSAT00000009526



1 to 25 of 25 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000003050 UniProtKB/TrEMBL
  ENSCSAG00000011437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000013552 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001076 UniProtKB/TrEMBL
  ENSCSAT00000001076.1 UniProtKB/TrEMBL
  ENSCSAT00000009526.1 UniProtKB/TrEMBL
  ENSCSAT00000011649.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro CALM/Myosin/TropC-like UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report csab:103220326 UniProtKB/TrEMBL
  csab:103229541 UniProtKB/TrEMBL
  csab:103234915 UniProtKB/TrEMBL
NCBI Gene CALM1 ENTREZGENE
PANTHER CALMODULIN LIKE 3 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PRINTS RECOVERIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9S2A3 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows