LOC120100306 (small nucleolar RNA SNORD116) - Rat Genome Database

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Gene: LOC120100306 (small nucleolar RNA SNORD116) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120100306
Name: small nucleolar RNA SNORD116
RGD ID: 40927834
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81120,192,800 - 120,192,892 (-)NCBIGRCr8
mRatBN7.21110,977,274 - 110,977,366 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1110,977,274 - 110,977,366 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120100306
1 total Variants

1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat

1 to 10 of 54 rows





RefSeq Transcripts XR_005500080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000095145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1110,977,274 - 110,977,366 (-)Ensembl
RefSeq Acc Id: XR_005500080
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81120,192,800 - 120,192,892 (-)NCBI
mRatBN7.21110,977,274 - 110,977,366 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-59262 BioCyc
Ensembl Genes ENSRNOG00000065900 Ensembl
NCBI Gene LOC120100306 ENTREZGENE
PhenoGen LOC120100306 PhenoGen
RatGTEx ENSRNOG00000065900 RatGTEx
RNAcentral URS00006FCE0A RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-26 LOC120100306  small nucleolar RNA SNORD116      Symbol and Name status set to provisional 70820 PROVISIONAL