Scl25 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl25 (Serum cholesterol level QTL 25) Rattus norvegicus

Symbol: Scl25
Name: Serum cholesterol level QTL 25
RGD ID: 1331800
Previously known as: Specialized Center of Research QTL 116; SCOR116
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.013
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,494,440 - 117,601,394RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0199,983,293 - 127,203,999RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01101,048,742 - 128,153,174RGDRnor5.0
RGSC_v3.4194,473,940 - 134,980,682RGDRGSC3.4
RGSC_v3.1194,552,051 - 135,059,025RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3888Klk1c2kallikrein 1-related peptidase C219449233294496480Rat
1593397Klk15-ps3kallikrein-related peptidase 15, pseudogene 319449917794505830Rat
41389408LOC120098457kallikrein-2-like19451814894532064Rat
6485832Klk15-ps1kallikrein-related peptidase 15, pseudogene 119453388994545793Rat
1305359Klk1c8kallikrein 1-related peptidase C819454777494552287Rat
1598667Klk5l1kallikrein related-peptidase 5 like 119456668894571882Rat
7557829Klk15-ps2kallikrein-related peptidase 15, pseudogene 219458801894594577Rat
727805Klk1c9kallikrein 1-related peptidase C919459735994601245Rat
41248172Klk5l-ps2kallikrein related-peptidase 5 like, pseudogene 219460846594612477Rat
2969Klk1kallikrein 119464264494646760Rat
11400164Klk5l2kallikrein related-peptidase 5 like 219465235394669527Rat
735032Klk1c3kallikrein 1-related peptidase C319467163694675417Rat
9170070LOC103691133prostate-specific antigen-like19468179094685589Rat
1310995Klk15kallikrein-related peptidase 1519469942294706626Rat
3175Klk1b3kallikrein 1-related peptidase B319470910594713308Rat
76363861700028J19RiklRIKEN cDNA 1700028J19 gene like19471361394730846Rat
7731725LOC102552485uncharacterized LOC10255248519471984694730038Rat
1309326Fv1Friend virus susceptibility 119473083994736791Rat
41292810Snord88csmall nucleolar RNA, C/D box 88C19473215594732245Rat
41012795LOC120100470small nucleolar RNA SNORD8819473429994734388Rat
41118856LOC120100471small nucleolar RNA SNORD8819473460494734693Rat
41364498Snord88bsmall nucleolar RNA, C/D box 88B19473493794735027Rat
1308270Acp4acid phosphatase 419473637694751871Rat
9421087Smim47small integral membrane protein 4719474463594746122Rat
7612505LOC102552286formyl peptide receptor-related sequence 4-like19474795394749932Rat
11496573Gpr32G protein-coupled receptor 3219475686394757895Rat
41154963Rpf1-ps1ribosome production factor 1, pseudogene 119479819794800311Rat
3627Clec11aC-type lectin domain containing 11A19480045694809002Rat
621011Shank1SH3 and multiple ankyrin repeat domains 119480787994857356Rat
1309036C1h19orf81simlar to human chromosome 19 open reading frame 8119485730194871323Rat
3805Syt3synaptotagmin 319488083594895518Rat
11388338LOC108349570uncharacterized LOC10834957019491568094923655Rat
1307121Lrrc4bleucine rich repeat containing 4B19492203494956309Rat
1310111Aspdhaspartate dehydrogenase domain containing19495632794960722Rat
1307305Josd2Josephin domain containing 219496086794964751Rat
40945041Trnaa-agc69transfer RNA alanine (anticodon AGC) 6919497229894972372Rat
1303214Emc10ER membrane protein complex subunit 1019498026094988847Rat
1311142Garin5agolgi associated RAB2 interactor 5A19498895994995971Rat
1311596Mybpc2myosin binding protein C219499412195017584Rat
1565899SpibSpi-B transcription factor19501893995024804Rat
621839Pold1DNA polymerase delta 1, catalytic subunit19502546295041559Rat
61906Nr1h2nuclear receptor subfamily 1, group H, member 219504196795047358Rat
61940Napsanapsin A aspartic peptidase19506472695077101Rat
621358Kcnc3potassium voltage-gated channel subfamily C member 319508096095095165Rat
1306821Myh14myosin heavy chain 1419509626695158861Rat
1563905Rpl19-ps23ribosomal protein L19, pseudogene 2319516357095164284Rat
1562619Izumo2IZUMO family member 219519645995209131Rat
1305084Zfp473zinc finger protein 47319522268395243328Rat
1549692Vrk3VRK serine/threonine kinase 319524334495270780Rat
628902Atf5activating transcription factor 519529560295299755Rat
619938Nup62nucleoporin 6219529899595314902Rat
1304831Il4i1interleukin 4 induced 119529945795324564Rat
1309686Tbc1d17TBC1 domain family, member 1719532477095333156Rat
1312049Akt1s1AKT1 substrate 119533318695339678Rat
1303331Pnkppolynucleotide kinase 3'-phosphatase19534146595346921Rat
1306977Ptov1PTOV1, extended AT-hook containing adaptor protein19534706595354514Rat
1305137Med25mediator complex subunit 2519535996195375827Rat
1310608Fuzfuzzy planar cell polarity protein19537954295384532Rat
1306254Ap2a1adaptor related protein complex 2 subunit alpha 119538430695414170Rat
727784Tskstestis-specific serine kinase substrate19541431295441670Rat
41049276Trnap-agg45transfer RNA proline (anticodon AGG) 4519541589095415964Rat
1305384Cpt1ccarnitine palmitoyltransferase 1c19544281495457347Rat
62020Prmt1protein arginine methyltransferase 119545885395468176Rat
1307361Bcl2l12Bcl2 like 1219547227295480991Rat
1549774Irf3interferon regulatory factor 319547996695484926Rat
708405Scaf1SR-related CTD-associated factor 119548544895499389Rat
1311443RrasRAS related19550058295504362Rat
1309896Prr12proline rich 1219551001595534002Rat
1305444Prrg2proline rich and Gla domain 219553427695543364Rat
1309992Nosipnitric oxide synthase interacting protein19554332995559101Rat
1359365Rcn3reticulocalbin 319556450395573762Rat
61811FcgrtFc gamma receptor and transporter19557443695584171Rat
2325455Mir150microRNA 15019560502495605108Rat
621026Rps11ribosomal protein S1119560569095607798Rat
41357901Snord35bsmall nucleolar RNA, C/D box 35B19560651095606596Rat
628697Rpl13aribosomal protein L13A19560937495612557Rat
41294442Snord35asmall nucleolar RNA, C/D box 35A19561018595610264Rat
40927059LOC120100340small nucleolar RNA SNORD3419561043295610498Rat
41332605Snord33small nucleolar RNA, C/D box 3319561069995610783Rat
41127338LOC120100339small nucleolar RNA Z195/SNORD33/SNORD32 family19561122295611304Rat
2322792Flt3lgFms related receptor tyrosine kinase 3 ligand19561505695620463Rat
1566295Aldh16a1aldehyde dehydrogenase 16 family, member A119562672795639808Rat
1309809Pih1d1PIH1 domain containing 119563959795645295Rat
620101Slc17a7solute carrier family 17 member 719564970995661591Rat
6500406Gfygolgi-associated, olfactory signaling regulator19566162195665300Rat
1559447Pth2parathyroid hormone 219566652595667174Rat
1561972Kash5KASH domain containing 519566891895691353Rat
1563523Dkkl1dickkopf like acrosomal protein 119569401095699259Rat
1593252Tead2TEA domain transcription factor 219570236695719186Rat
40979258LOC120097159uncharacterized LOC12009715919570437495707794Rat
62035Cd37CD37 molecule19571917195724662Rat
1561338Slc6a16solute carrier family 6, member 1619572169095750191Rat
1562492Slc6a21solute carrier family 6 member 2119575425795765854Rat
620244Trpm4transient receptor potential cation channel, subfamily M, member 419578180595812095Rat
727864Hrchistidine rich calcium binding protein19581326295816987Rat
620054Ppfia3PTPRF interacting protein alpha 319581711095845950Rat
41275464LOC120097162uncharacterized LOC12009716219584503395849118Rat
620730Lin7blin-7 homolog B, crumbs cell polarity complex component19584688895849628Rat
1307120Snrnp70small nuclear ribonucleoprotein U1 subunit 7019585603895876434Rat
1309632Kcna7potassium voltage-gated channel subfamily A member 719588607395891565Rat
3212Ntf4neurotrophin 419589356095896391Rat
3006Lhbluteinizing hormone subunit beta19589826995901973Rat
1306509Ruvbl2RuvB-like AAA ATPase 219590201495915247Rat
1589798Gys1glycogen synthase 119591544395935292Rat
61813Ftl1ferritin light chain 119593638795938234Rat
2192BaxBCL2 associated X, apoptosis regulator19594000195945407Rat
1588686Dhdhdihydrodiol dehydrogenase19595436195965262Rat
1310551Tulp2TUB like protein 219596249695999775Rat
620030Nucb1nucleobindin 119596832595999183Rat
621526Ppp1r15aprotein phosphatase 1, regulatory subunit 15A19600005396003128Rat
735133Plekha4pleckstrin homology domain containing A419600582496028826Rat
41252911Trnas-aga17transfer RNA serine (anticodon AGA) 1719601179096011864Rat
41004471LOC120097182uncharacterized LOC12009718219602475096033425Rat
1588673Hsd17b14hydroxysteroid (17-beta) dehydrogenase 1419602922496039577Rat
68948Bcat2branched chain amino acid transaminase 219604040796060008Rat
7628264LOC102556190uncharacterized LOC10255619019604107496047337Rat
40933693Trnap-gggtransfer RNA proline (anticodon GGG)19606763996067719Rat
620175Fgf21fibroblast growth factor 2119608336096084911Rat
2638Fut1fucosyltransferase 119608693496090352Rat
1565454Izumo1izumo sperm-oocyte fusion 119609081796096893Rat
1305291Rasip1Ras interacting protein 119609713596109564Rat
1588652MamstrMEF2 activating motif and SAP domain containing transcriptional regulator19610971596116295Rat
2639Fut2fucosyltransferase 219611954996139567Rat
1562499Sec1secretory blood group 119614339096164249Rat
1565197Ntn5netrin 519615694896165997Rat
735155Car11carbonic anhydrase 1119616990096175191Rat
2491DbpD-box binding PAR bZIP transcription factor19617579696180745Rat
1307757Sphk2sphingosine kinase 219618087296188592Rat
621182Rpl18ribosomal protein L1819618881196191452Rat
1309316Fam83efamily with sequence similarity 83, member E19619158196201182Rat
1587464Spaca4sperm acrosome associated 419619551496196187Rat
1308882Sult2b1sulfotransferase family 2B member 119620015596261295Rat
1588641Lmtk3lemur tyrosine kinase 319626105896280362Rat
620398Cyth2cytohesin 219628318296291094Rat
628872Kcnj14potassium inwardly-rectifying channel, subfamily J, member 1419629315996300810Rat
1310649Grwd1glutamate-rich WD repeat containing 119630126096306962Rat
2740Grin2dglutamate ionotropic receptor NMDA type subunit 2D19630687196346994Rat
1306764Kdelr1KDEL endoplasmic reticulum protein retention receptor 119634725896358145Rat
1307737Syngr4synaptogyrin 419635867996371840Rat
1305013Tmem143transmembrane protein 14319637193496387991Rat
621094Emp3epithelial membrane protein 319638865196391946Rat
1308141Odad1outer dynein arm docking complex subunit 119639213296420926Rat
620268Abcc6ATP binding cassette subfamily C member 619644722496501464Rat
1305240Nomo1Nodal modulator 119650546096556280Rat
1588614Ncr3lg1natural killer cell cytotoxicity receptor 3 ligand 119656566496581825Rat
7748347Epb41l5-ps1erythrocyte membrane protein band 4.1 like 5, pseudogene 119658515196588057Rat
69247Kcnj11potassium inwardly-rectifying channel, subfamily J, member 1119659104896594574Rat
3786Abcc8ATP binding cassette subfamily C member 819659856896679563Rat
1303329Ush1cUSH1 protein network component harmonin19669530396743671Rat
1306610Otogotogelin19674633696815416Rat
631429Myod1myogenic differentiation 119688486496887574Rat
40964065LOC120099806uncharacterized LOC12009980619689199996904056Rat
2955Kcnc1potassium voltage-gated channel subfamily C member 119690295396944744Rat
1563497Sergefsecretion regulating guanine nucleotide exchange factor19694966097152529Rat
40952192LOC120099808uncharacterized LOC12009980819712204697126401Rat
3895Tph1tryptophan hydroxylase 119715737597178415Rat
1587443Saal1serum amyloid A-like 119719868597218131Rat
1594860Saa3serum amyloid A 319721870697222150Rat
1307371Saa4serum amyloid A419724758097251882Rat
41378349Saal2serum amyloid A-like 219725763797259953Rat
1311916Hps5HPS5, biogenesis of lysosomal organelles complex 2 subunit 219728162697320945Rat
1308225Gtf2h1general transcription factor IIH subunit 119732141797349455Rat
7636379LOC102552634uncharacterized LOC10255263419734491797365236Rat
2996Ldhalactate dehydrogenase A19737182397381247Rat
41230808LOC120099812uncharacterized LOC12009981219738377897386285Rat
69366Ldhclactate dehydrogenase C19738598497403382Rat
3909Tsg101tumor susceptibility 10119741268997442589Rat
1587416UevldUEV and lactate/malate dehyrogenase domains19745418897486004Rat
6491878Misfamitochondrial sheath formation associated19752264197528961Rat
2319415Spty2d1SPT2 chromatin protein domain containing 119753149597549616Rat
1305749Tmem86atransmembrane protein 86A19759591097600260Rat
11452860Igsf22immunoglobulin superfamily member 2219760193897618144Rat
3448Ptpn5protein tyrosine phosphatase, non-receptor type 519762063897681186Rat
41074683LOC120099813uncharacterized LOC12009981319769140697706639Rat
632282Mrgprx3MAS related GPR family member X319772037797746953Rat
2320229Set-ps1Set nuclear proto-oncogene, pseudogene 119775323397797449Rat
632284Mrgprx1MAS related GPR family member X119780609997807070Rat
738043Mrgprb4MAS-related GPR, member B419785270497853675Rat
738052Mrgprb5MAS-related G protein-coupled receptor, member B519795919397960254Rat
41352397Hmgb1-ps32high-mobility group box 1, pseudogene 3219797329497974178Rat
40977331Mrgprb4-ps1MAS-related GPR, member B4, pseudogene 119797848197980262Rat
2322541Mrgprb13-ps1MAS-related GPR, member B13, pseudogene 119800209198004379Rat
6486569Mrgprb13-ps2MAS-related GPR, member B13, pseudogene 219803228298033552Rat
738051Mrgprb13MAS-related GPR, member B1319804101398041999Rat
2320559LOC100361204mas-related G-protein coupled receptor member B8-like19804940998050395Rat
41298225LOC120093062mas-related G-protein coupled receptor member B8-like19805785298058838Rat
738048Mrgprx2MAS related GPR family member X219811619298135534Rat
738053Mrgprx2lMAS-related G protein-coupled receptor, member X2-like19818544198186385Rat
1583794Far1-ps1fatty acyl CoA reductase 1, pseudogene 119818881698190338Rat
1587398Mrgprb3MAS-related GPR, member B319827080098286263Rat
1560730Mrgprb3lMAS-related GPR, member B3 like19837743398378401Rat
1591915Mrgprb2MAS-related GPR, member B219840114098403162Rat
1309736Zdhhc13zinc finger DHHC-type palmitoyltransferase 1319848731998525906Rat
71092Csrp3cysteine and glycine rich protein 319852806798546647Rat
1308091E2f8E2F transcription factor 819856571798584265Rat
2322090Ran-ps2RAN, member RAS oncogene family, pseudogene 219864557498655680Rat
619778Nav2neuron navigator 219895762999322339Rat
1308896Dbx1developing brain homeobox 119934863899354173Rat
7747342LOC102546796uncharacterized LOC10254679619941626999427141Rat
1309941Htatip2HIV-1 Tat interactive protein 219947341199488632Rat
620413Prmt3protein arginine methyltransferase 319949271299581774Rat
40939292LOC120100115U4 spliceosomal RNA19955785499557970Rat
41343058Gapdh-ps53Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 5319962205599623687Rat
621824Slc6a5solute carrier family 6 member 519964538999697016Rat
620998Nell1neural EGFL like 1199709305100573872Rat
41069108LOC120097222uncharacterized LOC12009722219982886399830975Rat
7736966LOC10255718260S ribosomal protein L31-like19998035899982992Rat
16424154933405O20RiklRIKEN cDNA 4933405O20 gene like1100300241100301711Rat
41395739Nsa2-ps7NSA2 ribosome biogenesis factor, pseudogene 71100469200100469968Rat
41271806Trnaa-agc61transfer RNA alanine (anticodon AGC) 611100836137100836210Rat
6500416Ftl1-ps1ferritin light chain 1, pseudogene 11100923579100924459Rat
41060898LOC120099814uncharacterized LOC1200998141101052794101087616Rat
1564265Ano5anoctamin 51101086490101187547Rat
7709992Csde1-ps1cold shock domain containing E1, pseudogene 11101128263101131688Rat
620531Slc17a6solute carrier family 17 member 61101212489101252543Rat
1583792Rpl18a-ps4ribosomal protein L18A, pseudogene 41101322809101323617Rat
40935431LOC120099815uncharacterized LOC1200998151101354768101380898Rat
1561456FancfFA complementation group F1101449120101451936Rat
1563167Gas2growth arrest-specific 21101452361101582619Rat
1565432Svipsmall VCP interacting protein1101587128101592818Rat
1559980Ccdc179coiled-coil domain containing 1791101600369101604288Rat
1585077Stip1-ps1stress-induced phosphoprotein 1, pseudogene 11101898734101900378Rat
6498966Ybx1-ps5Y box binding protein 1, pseudogene 51102225708102227243Rat
1585067Trim25-ps1tripartite motif-containing 25, pseudogene 11102350230102400041Rat
41070218LOC120099817uncharacterized LOC1200998171102476477102497194Rat
2321314Atxn1-ps1ataxin 1, pseudogene 11102516795102517889Rat
41236487Dnajb6-ps3DnaJ heat shock protein family (Hsp40) member B6, pseudogene 31102565949102567063Rat
7730966LOC102552387uncharacterized LOC1025523871102647014102669486Rat
1585050Ybx1-ps11Y box binding protein 1, pseudogene 111102914612102916158Rat
40964929LOC120100151U6 spliceosomal RNA1103004250103004356Rat
41048269LOC120099818uncharacterized LOC1200998181103031956103034632Rat
11465891LOC108349461uncharacterized LOC1083494611103443363103460555Rat
7512548LOC102552153uncharacterized LOC1025521531103510363103575329Rat
7518732LOC102552287uncharacterized LOC1025522871103583677103601779Rat
41329310Dnajb6-ps5DnaJ heat shock protein family (Hsp40) member B6, pseudogene 51103619537103621184Rat
1593285Hspd1-ps7heat shock protein family D (Hsp60) member 1, pseudogene 71103645663103648170Rat
2320865Atxn1-ps2ataxin 1, pseudogene 21103672445103674674Rat
6496810Ecsit-ps1ECSIT signaling integrator, pseudogene 11104502481104503645Rat
41166428LOC120100376small nucleolar RNA SNORA2/SNORA34 family1104515030104515165Rat
2320676Clp1-ps1cleavage factor polyribonucleotide kinase subunit 1, pseudogene 11105449881105451267Rat
6496163Luzp2leucine zipper protein 21105597291105983605Rat
41029545LOC120099819uncharacterized LOC1200998191105731072105743435Rat
2320478Hsp90ab1-ps1heat shock protein 90 alpha family class B member 1, pseudogene 11105948734105951090Rat
41153489LOC120100164U6 spliceosomal RNA1105964547105964651Rat
11409293LOC108348964uncharacterized LOC1083489641106125962106135332Rat
1590913Slc25a5-ps3solute carrier family 25 member 5, pseudogene 31106191309106192280Rat
1591914Ccdc137-ps1coiled-coil domain containing 137, pseudogene 11106199727106208762Rat
11393548LOC10834888060S ribosomal protein L34 pseudogene1106354560106354913Rat
41347527Rnu6-1195RNA, U6 small nuclear 11951106391996106392102Rat
1583954Hnrnpa1-ps16heterogeneous nuclear ribonucleoprotein A1, pseudogene 161106395841106397127Rat
41093297LOC120100213U7 small nuclear RNA1106488765106488826Rat
41176983LOC120100210U7 small nuclear RNA1106488917106488976Rat
1310401Siglechsialic acid binding Ig-like lectin H1106593721106604191Rat
6491275Rhoq-ps1ras homolog family member Q, pseudogene 11106623061106624411Rat
1304689Tubgcp5tubulin gamma complex component 51106636526106672175Rat
1310332Cyfip1cytoplasmic FMR1 interacting protein 11106710924106799393Rat
7716912Prdx3-ps1peroxiredoxin 3, pseudogene 11106775624106776566Rat
41202226LOC120100150U6 spliceosomal RNA1106789754106789860Rat
1306051Nipa2NIPA magnesium transporter 21106799979106824206Rat
11471669LOC108348727uncharacterized LOC1083487271106824340106838875Rat
1305401Nipa1NIPA magnesium transporter 11106834000106875148Rat
1307989Herc2HECT and RLD domain containing E3 ubiquitin protein ligase 21106904789107110997Rat
2318412Oca2OCA2 melanosomal transmembrane protein1107116278107446093Rat
1559691Dnmt3a-ps3DNA methyltransferase 3 alpha, pseudogene 31107153094107163738Rat
41284145Pole3-ps1DNA polymerase epsilon 3, accessory subunit, pseudogene 11107341034107356298Rat
621735Gabrg3gamma-aminobutyric acid type A receptor subunit gamma 31107627450108247483Rat
41269839Rpl6-ps17ribosomal protein L6, pseudogene 171107702837107711388Rat
41327125LOC120099822uncharacterized LOC1200998221108030936108068757Rat
61859Gabra5gamma-aminobutyric acid type A receptor subunit alpha 51108268728108381670Rat
1583906Sarnp-ps1SAP domain containing ribonucleoprotein, pseudogene 11108457981108458724Rat
2651Gabrb3gamma-aminobutyric acid type A receptor subunit beta 31108467047108702522Rat
41087592LOC120099823uncharacterized LOC1200998231108581448108596320Rat
1583789Hsdl1-ps1hydroxysteroid dehydrogenase like 1, pseudogene 11108780156108781131Rat
2319766Lias-ps2lipoic acid synthetase, pseudogene 21108802590108803356Rat
11422984LOC10834976860S ribosomal protein L29-like1108838092108838388Rat
41179831LOC120100444small nucleolar RNA SNORA171108932965108933098Rat
41061314LOC120100421small nucleolar RNA SNORA171109086517109086648Rat
41198576LOC120097768uncharacterized LOC1200977681109198620109204581Rat
11519974Trnae-uuc1transfer RNA glutamic acid (anticodon UUC) 11109313144109313215Rat
1306150Atp10aATPase phospholipid transporting 10A (putative)1109556760109730440Rat
41142333Odc1-ps8ornithine decarboxylase 1, pseudogene 81109953728109955186Rat
6488322LOC100912195protein BEX1-like1110047861110051812Rat
1306361Ube3aubiquitin protein ligase E3A1110070260110161675Rat
41393201LOC120097268uncharacterized LOC1200972681110123926110128015Rat
7676646Ube3al1ubiquitin protein ligase E3A like 11110158663110291293Rat
41253898LOC120100276small nucleolar RNA SNORD1151110178175110178252Rat
41033562LOC120100264small nucleolar RNA SNORD1151110180033110180111Rat
41268507LOC120100283small nucleolar RNA SNORD1151110182787110182865Rat
41234278LOC120100290small nucleolar RNA SNORD1151110184594110184670Rat
41297869LOC120100284small nucleolar RNA SNORD1151110186394110186471Rat
41079516LOC120100288small nucleolar RNA SNORD1151110189568110189645Rat
41042878LOC120100262small nucleolar RNA SNORD1151110190139110190216Rat
41158753LOC120100275small nucleolar RNA SNORD1151110193908110193985Rat
41185069LOC120100292small nucleolar RNA SNORD1151110197442110197520Rat
40953491LOC120100293small nucleolar RNA SNORD1151110200168110200253Rat
41123320LOC120100240small nucleolar RNA SNORD1151110208959110209036Rat
41110617LOC120100270small nucleolar RNA SNORD1151110210797110210874Rat
40943897LOC120100268small nucleolar RNA SNORD1151110212636110212713Rat
41130772LOC120100269small nucleolar RNA SNORD1151110214472110214549Rat
41104542LOC120100266small nucleolar RNA SNORD1151110223936110224013Rat
41345916LOC120100259small nucleolar RNA SNORD1151110225775110225852Rat
41338298LOC120100260small nucleolar RNA SNORD1151110227613110227690Rat
40983518LOC120100263small nucleolar RNA SNORD1151110236867110236944Rat
40982950LOC120100285small nucleolar RNA SNORD1151110238704110238780Rat
40973162LOC120100241small nucleolar RNA SNORD1151110240543110240620Rat
40943119LOC120100274small nucleolar RNA SNORD1151110242382110242458Rat
41015843LOC120100242small nucleolar RNA SNORD1151110244217110244294Rat
41303197LOC120100243small nucleolar RNA SNORD1151110246052110246129Rat
40973358LOC120100244small nucleolar RNA SNORD1151110247891110247968Rat
41236265LOC120100246small nucleolar RNA SNORD1151110249730110249807Rat
41324388LOC120100247small nucleolar RNA SNORD1151110251568110251645Rat
41317864LOC120100248small nucleolar RNA SNORD1151110253404110253481Rat
41206771LOC120100249small nucleolar RNA SNORD1151110255243110255320Rat
41113608LOC120100250small nucleolar RNA SNORD1151110257081110257158Rat
40966335LOC120100251small nucleolar RNA SNORD1151110258920110258997Rat
41073030LOC120100252small nucleolar RNA SNORD1151110260759110260836Rat
41322133LOC120100253small nucleolar RNA SNORD1151110267359110267436Rat
41323105LOC120100254small nucleolar RNA SNORD1151110269195110269271Rat
40983394LOC120100261small nucleolar RNA SNORD1151110271033110271110Rat
41304089LOC120100239small nucleolar RNA SNORD1151110272865110272942Rat
41309315LOC120100235small nucleolar RNA SNORD1151110274700110274777Rat
41016316LOC120100236small nucleolar RNA SNORD1151110283559110283636Rat
41214457LOC120100258small nucleolar RNA SNORD1151110285396110285473Rat
40983475LOC120100257small nucleolar RNA SNORD1151110287232110287309Rat
41335386LOC120100237small nucleolar RNA SNORD1151110289065110289142Rat
41113286LOC120100277small nucleolar RNA SNORD1151110290902110290979Rat
41321796LOC120100238small nucleolar RNA SNORD1151110292739110292816Rat
41338037LOC120100255small nucleolar RNA SNORD1151110294577110294654Rat
7660362LOC102551177uncharacterized LOC1025511771110294734111035350Rat
41279059LOC120100281small nucleolar RNA SNORD1151110296410110296487Rat
41357392LOC120100282small nucleolar RNA SNORD1151110299683110299760Rat
41202669LOC120100280small nucleolar RNA SNORD1151110301514110301588Rat
41148090LOC120100271small nucleolar RNA SNORD1151110303346110303423Rat
40943837LOC120100279small nucleolar RNA SNORD1151110305181110305258Rat
40979199LOC120100272small nucleolar RNA SNORD1151110307020110307096Rat
41166596LOC120100265small nucleolar RNA SNORD1151110308960110309037Rat
40941743LOC120100286small nucleolar RNA SNORD1151110311820110311899Rat
41247311LOC120100287small nucleolar RNA SNORD1151110313740110313816Rat
40996824LOC120100273small nucleolar RNA SNORD1151110315578110315662Rat
41108358LOC120100291small nucleolar RNA SNORD1151110322055110322131Rat
41396804LOC120100331small nucleolar RNA SNORD1161110462563110462655Rat
41023737LOC120100319small nucleolar RNA SNORD1161110467179110467271Rat
41084950LOC120100317small nucleolar RNA SNORD1161110469365110469457Rat
41235310LOC120100314small nucleolar RNA SNORD1161110477332110477424Rat
41356364LOC120100313small nucleolar RNA SNORD1161110479954110480046Rat
41015411LOC120100324small nucleolar RNA SNORD1161110482541110482633Rat
41081049LOC120100325small nucleolar RNA SNORD1161110485165110485257Rat
41119470LOC120100326small nucleolar RNA SNORD1161110487777110487869Rat
41077533LOC120100327small nucleolar RNA SNORD1161110490401110490493Rat
41397269LOC120100315small nucleolar RNA SNORD1161110492982110493074Rat
41200237LOC120100330small nucleolar RNA SNORD1161110495552110495645Rat
41064894LOC120100295small nucleolar RNA SNORD1161110498125110498217Rat
41218166LOC120100310small nucleolar RNA SNORD1161110972130110972222Rat
40971092LOC120100305small nucleolar RNA SNORD1161110974703110974795Rat
40927834LOC120100306small nucleolar RNA SNORD1161110977274110977366Rat
41012988LOC120100329small nucleolar RNA SNORD1161110979851110979943Rat
41211402LOC120100312small nucleolar RNA SNORD1161110982423110982515Rat
41342901LOC120100321small nucleolar RNA SNORD1161110985002110985094Rat
40943754LOC120100307small nucleolar RNA SNORD1161110987576110987668Rat
41366411LOC120100318small nucleolar RNA SNORD1161110990216110990308Rat
41224851LOC120100335small nucleolar RNA SNORD1161110992583110992674Rat
41354060LOC120100333small nucleolar RNA SNORD1161110995192110995284Rat
41085628LOC120100308small nucleolar RNA SNORD1161110997780110997872Rat
40938955LOC120100316small nucleolar RNA SNORD1161111000373111000465Rat
41176080LOC120100323small nucleolar RNA SNORD1161111002979111003070Rat
40999106LOC120100332small nucleolar RNA SNORD1161111005695111005787Rat
41337281LOC120100320small nucleolar RNA SNORD1161111014871111014964Rat
41122044LOC120100336small nucleolar RNA SNORD1161111034987111035076Rat
41296445LOC120100337small nucleolar RNA SNORD1161111037433111037527Rat
41266353Snord64small nucleolar RNA, C/D box 641111094909111094975Rat
41054606Snord107small nucleolar RNA, C/D box 1071111099306111099377Rat
621306Snrpnsmall nuclear ribonucleoprotein polypeptide N1111101327111123400Rat
69269SnurfSNRPN upstream open reading frame1111101327111123634Rat
9283938Rhog-ps3ras homolog family member G, pseudogene 31111125687111208473Rat
41084506LOC120099825uncharacterized LOC1200998251111424659111494106Rat
1583788Commd9-ps1COMM domain containing 9, pseudogene 11111426330111428933Rat
1561206Slc25a19l1solute carrier family 25 member 19 like 11111433195111435231Rat
41047128LOC120099826uncharacterized LOC1200998261113454803113493548Rat
40956054LOC120100387U2 spliceosomal RNA1113515184113515344Rat
41324480LOC120099827uncharacterized LOC1200998271113551559113562494Rat
6503647Rbm4b-ps1RNA binding motif protein 4B, pseudogene 11113739597113740013Rat
7750416Mgat4a-ps1alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A, pseudogene 11113857991113864613Rat
41382752LOC120099829uncharacterized LOC1200998291114066134114087090Rat
41239287LOC120099830uncharacterized LOC1200998301114155536114162109Rat
7634635LOC102555470uncharacterized LOC1025554701114294070114303084Rat
9198344LOC103691146uncharacterized LOC1036911461114303744114386780Rat
7650527LOC102555617uncharacterized LOC1025556171114440731114448803Rat
41248427LOC120099831uncharacterized LOC1200998311114615464114620387Rat
14398575Mir344b-2microRNA mir-344b-21114616603114616673Rat
4888550Mir344b-1microRNA 344b-11114623759114623856Rat
14398600Mir344b-3microRNA mir-344b-31114632635114632705Rat
7511549LOC102555775uncharacterized LOC1025557751114637762114649714Rat
7544339LOC102555866uncharacterized LOC1025558661114688298114932765Rat
41022847LOC120099833uncharacterized LOC1200998331115011988115017347Rat
41401400LOC120099834uncharacterized LOC1200998341115051743115085815Rat
4888565Mir344a-2microRNA 344a-21115243128115243234Rat
7580217Snrpb-ps1small nuclear ribonucleoprotein polypeptides B and B1, pseudogene 11115304693115305592Rat
2325614Mir344-1microRNA 344-11115306861115306958Rat
7489017Mir344gmicroRNA 344g1115343044115343122Rat
7489023Mir344imicroRNA 344i1115426210115426308Rat
7697895LOC102546835uncharacterized LOC1025468351115475057115720360Rat
41296176LOC120097775uncharacterized LOC1200977751115747262115755253Rat
1310526Ndnnecdin, MAGE family member1115849168115850767Rat
1583615Magel2MAGE family member L21115880142115884684Rat
1311197Mkrn3makorin, ring finger protein, 31115926774115929288Rat
1591913Traf7-ps1TNF receptor associated factor 7, pseudogene 11115943129115945159Rat
1307664Peg12paternally expressed 121115962511115965114Rat
1598109Morf4l1-ps7mortality factor 4 like 1, pseudogene 71115975577115976718Rat
1596870Zc3h11a-ps2zinc finger CCCH-type containing 11A, pseudogene 21116013406116016461Rat
1626035Vom2r-ps62vomeronasal 2 receptor, pseudogene 621116129167116157652Rat
7545650Potefam2POTE ankyrin domain family member 21116271482116447353Rat
7631858Fbxw11-ps1F-box and WD repeat domain containing 11, pseudogene 11116428735116431543Rat
2348Chrna7cholinergic receptor nicotinic alpha 7 subunit1116711559116837269Rat
7728972LOC102548165uncharacterized LOC1025481651116963210116996324Rat
7508565LOC102548323uncharacterized LOC1025483231116995976117064301Rat
1563721Otud7aOTU deubiquitinase 7A1117064428117388217Rat
41013486Rpl36-ps8ribosomal protein L36, pseudogene1117148209117148529Rat
1308736Hmgn5bhigh mobility group nucleosome binding domain 5B1117222188117224158Rat
40957095Rpl7a-ps34ribosomal protein L7a, pseudogene 341117339434117347725Rat
1565099Klf13KLF transcription factor 131117505857117536626Rat
41322568LOC120100492small nucleolar RNA U31117570637117570845Rat
7625624LOC102548601uncharacterized LOC1025486011117601030117605930Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10613D1Arb103901108698333108698726Ratregion
10839D1Wox1812419464443594644553Ratregion
34258D1Mgh3510719846236998462476Ratregion
34258D1Mgh3510719846236998463159Ratregion
34381D1Mgh71451106047847106047988Ratregion
11439D1Mit3018219449444094494763Ratregion
11439D1Mit3018219449457994494763Ratregion
33686D1Mit112691102268556102268831Ratregion
37248D1Rat2222011100045425100045634Ratregion
37344D1Rat2062031100125741100125944Ratregion
35220D1Rat291471102813953102814117Ratregion
35268D1Rat341701114466166114466337Ratregion
35374D1Rat10115819714628397146439Ratregion
35569D1Rat302381100357752100358001Ratregion
36936D1Rat10217519914111299141287Ratregion
36982D1Rat311741107191753107191933Ratregion
36464D1Rat1041521109640208109640360Ratregion
36791D1Rat37917619662782896627999Ratregion
35166D1Rat331601115540693115540829Ratregion
35869D1Rat1031801101801064101801237Ratregion
38218D1Rat21410019986209699862196Ratregion
40040D1Rat2681591108687741108687892Ratregion
40274D1Rat31913719883172298831857Ratregion
42269D1Rat46511919910725899107381Ratregion
42270D1Rat49824319629593496296172Ratregion
42271D1Rat46623219608250096082729Ratregion
42272D1Rat4901831106130307106130494Ratregion
41426D1Rat26717519743700697437180Ratregion
42481D1Rat41420719517917895179380Ratregion
42483D1Rat3451291108127943108128068Ratregion
42484D1Rat3441541115426989115427147Ratregion
41694D1Rat3812091114673284114673488Ratregion
41898D1Rat4672441114263223114263459Ratregion
43270D1Got9719219513350095133690Ratregion
43275D1Got9915719906351599063672Ratregion
60236D1Got2701931109610140109610333Ratregion
60240D1Got2781361115540699115540832Ratregion
60263D1Got9513119649703696497167Ratregion
625800D1Got2772411114207586114207824Ratregion
629600D1Hmgc619019688697796887167Ratregion
61282D1M7Mit69019877327798773511Ratregion
629601D1Hmgc721219688869496888940Ratregion
66591D1Mco2813719464440794644542Ratregion
66612D1Mco373761114771642114772018Ratregion
66613D1Mco381851110159449110159650Ratregion
66621D1Mco441611117248161117248326Ratregion
67307D1Arb5131819464427094644586Ratregion
1630129D1Got4151221100767982100768104Ratregion
1630332D1Got3142621105390396105390658Ratregion
1631769D1Got3732351109731673109731903Ratregion
1631881D1Got3162121116831353116831565Ratregion
1632415D1Got4102021102212127102212288Ratregion
1632415D1Got4102021102927108102927312Ratregion
1626993D1Mco652121108687678108687892Ratregion
1627363D1Mco641981108580284108580484Ratregion
1629045D1Got4041831100728050100728233Ratregion
1638523D1Got43021619864105698641272Ratregion
1639236D1Got3071181102270976102271089Ratregion
1639525D1Got4322661100976807100977073Ratregion
1640935D1Got4431351103648288103648423Ratregion
1641296D1Wox532481108698507108698751Ratregion
1633271D1Got31014819999829699998444Ratregion
1640033D1Got4381571101357004101357161Ratregion
1636200D1Got4062931105906176105906465Ratregion
1636573D1Got3132201115788339115788559Ratregion
1636995D1Got3542201101463657101463877Ratregion
1637654D1Wox4031919715859397158914Ratregion
1638199D1Got3152141116566902116567116Ratregion
1632526D1Got3061141102270969102271083Ratregion
1634048D1Got30916519999830099998464Ratregion
1634688D1Got3081721103092085103092259Ratregion
1634728D1Got3121821111315035111315217Ratregion
7206400CH04h028531107419147107420000Ratregion
7205974Trpm48219578242895782510Ratregion
7206052Grin2d39119632770296329051Ratregion
7206056UniSTS:53145540819693387396934281Ratregion
7192143Bax16119594364995944590Ratregion
7206430Napsa9219507591095076851Ratregion
7206454Myod1126719688619596887462Ratregion
5035935PMC312732P150019659281596593315Ratregion
5038664AF0615291471107107638107107785Ratregion
5036083Ap2a1019538432595384502Ratregion
7206522UniSTS:5468628941113862738113863632Ratregion
7206664Magel22931115883400115883693Ratregion
7206668Mkrn35091115928358115928867Ratregion
7206670Ndn3791115849480115849859Ratregion
7206672Ndn12721115849480115850752Ratregion
5039176RH12755518219605963896059820Ratregion
5036482Rras13219550415195504283Ratregion
5039026RH12747020519734910897349313Ratregion
5039062RH12749018319498253294982715Ratregion
5039088RH12750618119596841995968600Ratregion
5036637AU0486739819509970495099802Ratregion
5035538Ntf524919589565995895908Ratregion
5031264PMC122245P146119566663895667099Ratregion
5033865RH14040814819544281495442962Ratregion
5026006RH13054720719532478395324990Ratregion
5026020RH13060118419741503597415219Ratregion
7206118UniSTS:5321476021115927534115928136Ratregion
5034065RH14122721719724767297247889Ratregion
5034135RH14149620119931913499319329Ratregion
5034209RH14177918119618041396180594Ratregion
5026304RH13169919819603935996039557Ratregion
5031760AU04724418619741586697416052Ratregion
5034594BF41675312919611613196116260Ratregion
5029321RH14435429619502887295029168Ratregion
5029325RH14437010519595179295951897Ratregion
5032101RH9440215919618056696180725Ratregion
5034784AA89195515419504205695042210Ratregion
5034812AI01238612719611967496119801Ratregion
5029470D1Bda2020919560572795606280Ratregion
5032217AI528698921115850559115850651Ratregion
5032281AI8535519519610934696109441Ratregion
5035142AW14053015619742188197422037Ratregion
5029617BE10166820019484949494849694Ratregion
5032503D7Ertd156e22019655602896556248Ratregion
5027143HSCZSA03221219566134395661555Ratregion
5029805BI27837917719556452595564702Ratregion
5032665RH13484418919644744496447633Ratregion
5027335AI3857539119489533394895424Ratregion
5029977BI28587622019545885795459077Ratregion
5025032AW74269824819759998397600231Ratregion
5025034AW0495851361108702234108702370Ratregion
5027605AJ13260210819504200495042112Ratregion
5027645AW5567971331117328176117328304Ratregion
5027739ZNF139701112516354112516424Ratregion
5030243BI29352422019732073797320957Ratregion
5030319AI11301718519562676995626954Ratregion
5030347AW5330271631106834214106834377Ratregion
5030383BF3970232501115838816115839067Ratregion
5033087RH13754214219599914595999466Ratregion
5033183RH13789012919532281895322947Ratregion
5025170179H3-SP616319524055295240715Ratregion
5025216RH12745818319600015296000335Ratregion
502783506.MMHAP38FLB3.seq17119533230595332476Ratregion
5030531BF40392716419499435294994516Ratregion
5033281RH1382572421108682588108682830Ratregion
502793336.MMHAP29FRD12.seq8219895849398958575Ratregion
5028001M218282001101581752101581952Ratregion
5025608RH12897718719852807698528263Ratregion
5033557RH13926212319497755694977679Ratregion
5028279D7Mit1451511100976948100977099Ratregion
5030943BE11495115719585612395856280Ratregion
5031013AW53603315319495598994956250Ratregion
5028474AU04177921819534708995347307Ratregion
5055069RH14358816419565467095654834Ratregion
5051421D378749619557454695574642Ratregion
5051425AI57342611819550407795504195Ratregion
5051643AI3250989419587536495875458Ratregion
5056643RH14449625319588841795888670Ratregion
5057133D1Bda1530719608799896088305Ratregion
5057141D1Bda1916919489505994895228Ratregion
5057143D1Bda2133619688600296886338Ratregion
5057135D1Bda1625519557451695574771Ratregion
5057139D1Bda1826219618028296180544Ratregion
5057145D1Bda223531116714895116715248Ratregion
5057221D1Bda692971111136361111136658Ratregion
5057420BF41821217219728931197289483Ratregion
5057480AA85892224419507550095075744Ratregion
5059516BE09716721319509001395090226Ratregion
5057872BE1016071931106882194106882387Ratregion
5057936BF39291410319508663195086734Ratregion
5058536BI29077111919573725495737373Ratregion
5058604BE1021811621117206738117206900Ratregion
5055973RH14411010619958219299582298Ratregion
5058722BE10238516619759106797591234Ratregion
5059614BE09744921019535848895358698Ratregion
5056953RH1446761511107623160107623311Ratregion
5052323U2821619419762605997626253Ratregion
5052375Y075217819693442896934506Ratregion
5055447RH1438061371101451898101452035Ratregion
5055525RH14385127919495570794955986Ratregion
5049916RH13375619419480164994801843Ratregion
5050012RH13381121719785251897852735Ratregion
5052325U28217019762129397621464Ratregion
5058424BI29013619119534668195346872Ratregion
5050238RH13394119619580395195804147Ratregion
5059332AW53004520419538407895384282Ratregion
5053579RH14273010019509626595096365Ratregion
5049942RH1337701931105983271105983464Ratregion
5050972RH13436421019547293495473144Ratregion
5050860RH13430018319628326696283449Ratregion
5051004RH13438219419760000497600198Ratregion
5041888RH12911718919618092396181112Ratregion
5041906RH12912715319655608996556242Ratregion
5041312RH1287851831115961578115961761Ratregion
5045436RH13117719219480049494800926Ratregion
5044040RH13037518319744570697445889Ratregion
5044738RH13077621519659161796591832Ratregion
5047478RH13235118819762070297620890Ratregion
5045106RH13098719019879466098794850Ratregion
5046042RH13152520519811623698116441Ratregion
5046142RH13158221819654909496549312Ratregion
5047620RH13243218119669543096695611Ratregion
5048902RH13317222019760067597600895Ratregion
5046602RH13184815219852551198525663Ratregion
5046648RH13187418019753198097532160Ratregion
5045932RH13146221419617481296175026Ratregion
5049054RH13325918619555877695558962Ratregion
5049210RH13334919219531457595314767Ratregion
5046780RH1319501811107454109107454290Ratregion
5048232RH1327842121114440996114441208Ratregion
5039972RH1280152131106800255106800468Ratregion
5042512RH12947820219529567495295876Ratregion
5048614RH1330051831101185243101185428Ratregion
5040074RH12807420719533945295339659Ratregion
5040698RH12843220519571888095719085Ratregion
5040706RH12843721419610928596109499Ratregion
5043288RH12994001115962539115962749Ratregion
5043388RH12999718519694454296944727Ratregion
5043472RH13004518819564012795640315Ratregion
5040000RH12803219119561447295614663Ratregion
5040008RH12803619319548563095485823Ratregion
7192239D1Wox532471108698507108698750Ratregion
5040374RH12824619619534724695347442Ratregion
5072498RH13688418819856683298567020Ratregion
5072764RH13703918219483179694831978Ratregion
5072090RH13664501108700619108700800Ratregion
5075774RH13878915019920818899208338Ratregion
5074182RH1378692231108105589108105812Ratregion
5074184RH1378701281111050114111050242Ratregion
5074498RH13805113319595313695953269Ratregion
5074726RH13818312019642074396420863Ratregion
5076890RH1394381891101449297101449486Ratregion
5075316RH1385241991101461615101461814Ratregion
5074884RH13827412919691538796915516Ratregion
5074980RH1383291581114783147114783305Ratregion
5080570RH14165621119587066895870879Ratregion
5080592RH14166920019558197295582172Ratregion
5075990RH1389142441107107762107108006Ratregion
5079542RH14105819119590228195902816Ratregion
5079580RH14108220119593484695935047Ratregion
5077128RH13957720419544306395443524Ratregion
5076348RH13912314519851872398518858Ratregion
5076458RH13918714319497640894976551Ratregion
5076458RH13918714319497640894976653Ratregion
5078222RH14021418319498338894983571Ratregion
5078914RH14062519819628447196284757Ratregion
5078922RH14062918819504280395044216Ratregion
5079054RH14070816519497755694977721Ratregion
5079070RH14071823619759802197598257Ratregion
5079178RH14078117919734856897348747Ratregion
5079322RH14091618119720015897200696Ratregion
5071012RH13483518119728165897281839Ratregion
5073270RH13733918019694968396949863Ratregion
5073282RH13734620619721872697218932Ratregion
5073470RH1374551971108699821108700018Ratregion
5080444RH14158219619957914399579339Ratregion
5073746RH1376141681110068734110068902Ratregion
5073760RH1376221641105981200105981364Ratregion
5072836RH13708218019564488195645221Ratregion
5073066RH1372162021106671933106672135Ratregion
5071578RH13516321719498319394984361Ratregion
5074140RH13784514719595715895957305Ratregion
5071454RH1350912151111433308111433523Ratregion
5074796RH1382231751100573694100573869Ratregion
5071724RH13524820219904065399040855Ratregion
5061836AW5272431531117501928117502081Ratregion
5066644AU0482352011107015087107015288Ratregion
5066650AU0482321621108078502108078666Ratregion
5066814AU0481351261103829984103830110Ratregion
5067644AU0476211401100447153100447293Ratregion
5067982AU0474201461100747798100747944Ratregion
5068136AU0473262071100892089100892291Ratregion
5068136AU0473262071100892089100892609Ratregion
5068152AU0473172141113764184113764398Ratregion
5068440AU0471432971104315928104316209Ratregion
5068616AU04703721019547059595470642Ratregion
5070167RH9451116319489507294895235Ratregion
5068962AU04681423819460694994607182Ratregion
5070217RH945409019508665395086743Ratregion
5070219RH9454116919470877194708940Ratregion
5070275RH945738219589591095895992Ratregion
5069108AU0467202781111126756111127025Ratregion
5061986BF39706615119969518399695334Ratregion
5062116BE10622616619692870196928867Ratregion
5060524BE11028319819507542095075618Ratregion
5062284BI28860719819929925999299457Ratregion
5062718BF40398714319550104595501188Ratregion
5064438BF3992111811106673509106673690Ratregion
5065836BF40683111419729508497295198Ratregion
5060116BF38850617119664088796641058Ratregion
5060304BG37857717219577904495779216Ratregion
5060348AW5315061701108653215108653385Ratregion
5060438BE11006616319663918196639344Ratregion
5060452BE09810015619532241395322569Ratregion
5063936BE1202791511107619502107619653Ratregion
5064070BE12059215919740317897403337Ratregion
5065482BE10907620519555019895550403Ratregion
5066042AA92538520219485744194857643Ratregion
5061144AW53298922019509641095096630Ratregion
5062842BI29516312719496835694968483Ratregion
5062912BE11337716619659112296591288Ratregion
5062934BF41004110119637268096372781Ratregion
5062982BE1135471521108661984108662136Ratregion
5063020BI29579013819588624495886383Ratregion
5063150BI3013721621109580362109580524Ratregion
5066484AU0483292031104054313104054516Ratregion
5066524AU0483061081106016691106016801Ratregion
5084166AI2340921671106652090106652257Ratregion
5082205BI28071315419527057695270730Ratregion
5086313BM38703819419620070796200901Ratregion
5087169AW52331419219620017196200363Ratregion
5087311AA81988118019635769796357877Ratregion
5087714Bax29919594365095944822Ratregion
5088975AU04888027319970818699708459Ratregion
5089153AU0489861071106961541106961573Ratregion
5083155BF3908901521117075986117076138Ratregion
5083589BI27633015419741280297412956Ratregion
5089529AU0492092811109168212109168491Ratregion
5084716AA85152821819658256796582785Ratregion
5084734AI007682941107446336107446430Ratregion
5081833AI06015918419489530894895492Ratregion
5082241BI27437015919638725896387417Ratregion
5088405AU04855022419495145694951682Ratregion
5080766RH1417691921106625204106625396Ratregion
5080906RH1418511871106800961106801148Ratregion
5085116BQ19550015519897684098976995Ratregion
5088847AU0488051261108237671108237797Ratregion
5085519AI5989641521106800573106800725Ratregion
5082703BG37366621919509493495095153Ratregion
5084502AI23461520919578225295782461Ratregion
5086110BQ19115415419856607398566227Ratregion
5081148RH14199219319630135696301549Ratregion
5086437BM3871661631108060638108060801Ratregion
5086602BF4030569919527225895272357Ratregion
5083393BF3910521541107801019107801173Ratregion
5081829AI0601261861101252259101252445Ratregion
5081983BF4155429419618376596183859Ratregion
5083823AA80089414819553435395534501Ratregion
5084050AA89298911619604035996040475Ratregion
5503468SLC17A7_839.274919566045495661204Ratregion
5503988UniSTS:2572365481102803565102804113Ratregion
5503990UniSTS:2572355541102803562102804116Ratregion
5504594PMC311424P101107079811107080723Ratregion
5504738PMC86435P331619593382095934136Ratregion
5504754PMC86965P515519688475596884910Ratregion
5504210RH111601441108698508108698648Ratregion
5504801Ube3a2671110153395110154672Ratregion
5504803Ube3a9251110137396110138321Ratregion
5505556STS-N2294250119857453698575037Ratregion
5505720UniSTS:49050652919584623395846762Ratregion
5506167UniSTS:49852076619930977699310542Ratregion
5506543KCNC1_87979319693364896934441Ratregion
5507217UniSTS:22532117119489509194895262Ratregion
5502000MARC_23449-23450:1027106382:148519539039495390879Ratregion
5500328GDB:1927892581108698188108698446Ratregion
5500719RH2733817619693388796934063Ratregion
5500733A005V4014451104615367104616812Ratregion
5501081PMC133998P378219688543896886220Ratregion
5501445Abcc8019660128896602231Ratregion
5505165Trib12481105391709105391899Ratregion
5501628Flt3l8719561911295619716Ratregion
5505572UniSTS:48315601106623061106623722Ratregion
5502108MARC_4679-4680:996679598:119119560630495606983Ratregion
5502901Ndn9471115849562115850509Ratregion
Position Markers

Flank 1: (D1Mit30)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,494,440 - 94,494,763 (+)MAPPER
mRatBN7.2194,494,579 - 94,494,763 (+)MAPPER
Rnor_6.0199,983,524 - 99,983,705NCBI
Rnor_6.0199,983,293 - 99,983,705NCBI
Rnor_5.01101,048,742 - 101,049,154UniSTS
Rnor_5.01101,048,973 - 101,049,154UniSTS
RGSC_v3.4194,473,941 - 94,474,122UniSTS
RGSC_v3.4194,473,940 - 94,474,122RGD
RGSC_v3.1194,552,051 - 94,552,233RGD
Celera188,761,687 - 88,761,868UniSTS
RH 3.4 Map1904.9UniSTS
RH 3.4 Map1904.9RGD
RH 2.0 Map1595.2RGD
Cytogenetic Map1q22UniSTS
Peak: (D1Mgh7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21106,047,847 - 106,047,988 (+)MAPPER
Rnor_6.01113,593,576 - 113,593,716NCBI
Rnor_5.01114,600,888 - 114,601,028UniSTS
RGSC_v3.41106,445,166 - 106,445,306UniSTS
RGSC_v3.41106,445,165 - 106,445,306RGD
RGSC_v3.11106,523,508 - 106,523,649RGD
Celera1100,289,873 - 100,290,013UniSTS
RH 3.4 Map1940.7RGD
RH 3.4 Map1940.7UniSTS
SHRSP x BN Map153.8299UniSTS
SHRSP x BN Map153.8299RGD
FHH x ACI Map153.4RGD
Cytogenetic Map1 RGD
Flank 2: (D1Mit2)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.41134,980,527 - 134,980,682UniSTS
RGSC_v3.41134,980,526 - 134,980,682RGD
RGSC_v3.11135,058,870 - 135,059,025RGD
Celera1125,236,740 - 125,236,887UniSTS
RH 3.4 Map11060.8RGD
RH 2.0 Map1699.8RGD
SHRSP x BN Map167.76RGD
FHH x ACI Map166.7RGD
Cytogenetic Map1 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl25

RGD Curation Notes
Note Type Note Reference
qtl_general serum total cholesterol level, low salt diet following Lasix injection (SCOR116) 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849