Bp246 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp246 (Blood pressure QTL 246) Rattus norvegicus

Symbol: Bp246
Name: Blood pressure QTL 246
RGD ID: 1354606
Previously known as: QTL 40
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: pulse pressure   (CMO:0000292)    
LOD Score: 3.6
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81111,949,780 - 228,180,370RGD_MAPPER_PIPELINE
mRatBN7.21102,813,953 - 218,753,816RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01108,986,301 - 238,830,534RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01110,018,554 - 246,119,106RGDRnor5.0
RGSC_v3.41103,149,923 - 224,426,393RGDRGSC3.4
RGSC_v3.11103,228,034 - 224,590,416RGD
Cross Type: intercross
Strains Crossed: LH/Mav LN/Mav 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Rathypertension  IAGP 1302893 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Ratabnormal systemic arterial blood pressure  QTM 1302893 RGD 
Bp246Ratincreased pulse pressure  IAGP 1302893 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Ratpulse pressure  IDA 1302893 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Ratcontrol condition  IDA 1302893 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Ratvascular indwelling catheter method  IDA 1302893 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246RatLH/Mav  IEA 1302893 RGD 
Bp246RatLN/Mav  IEA 1302893 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bp246Ratarterial blood pressure trait  IDA 1302893 RGD 


#
Reference Title
Reference Citation
1. Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat. Bilusic M, etal., Hypertension 2004 Nov;44(5):695-701. Epub 2004 Sep 27.


1 to 20 of 2254 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1585050Ybx1-ps11Y box binding protein 1, pseudogene 111102914612102916158Rat
40964929LOC120100151U6 spliceosomal RNA1103004250103004356Rat
41048269LOC120099818uncharacterized LOC1200998181103031956103034632Rat
11465891LOC108349461uncharacterized LOC1083494611103443363103460555Rat
7512548LOC102552153uncharacterized LOC1025521531103510363103575329Rat
7518732LOC102552287uncharacterized LOC1025522871103583677103601779Rat
41329310Dnajb6-ps5DnaJ heat shock protein family (Hsp40) member B6, pseudogene 51103619537103621184Rat
1593285Hspd1-ps7heat shock protein family D (Hsp60) member 1, pseudogene 71103645663103648170Rat
2320865Atxn1-ps2ataxin 1, pseudogene 21103672445103674674Rat
6496810Ecsit-ps1ECSIT signaling integrator, pseudogene 11104502481104503645Rat
41166428LOC120100376small nucleolar RNA SNORA2/SNORA34 family1104515030104515165Rat
2320676Clp1-ps1cleavage factor polyribonucleotide kinase subunit 1, pseudogene 11105449881105451267Rat
6496163Luzp2leucine zipper protein 21105597291105983605Rat
41029545LOC120099819uncharacterized LOC1200998191105731072105743435Rat
2320478Hsp90ab1-ps1heat shock protein 90 alpha family class B member 1, pseudogene 11105948734105951090Rat
41153489LOC120100164U6 spliceosomal RNA1105964547105964651Rat
11409293LOC108348964uncharacterized LOC1083489641106125962106135332Rat
1590913Slc25a5-ps3solute carrier family 25 member 5, pseudogene 31106191309106192280Rat
1591914Ccdc137-ps1coiled-coil domain containing 137, pseudogene 11106199727106208762Rat
11393548LOC10834888060S ribosomal protein L34 pseudogene1106354560106354913Rat

1 to 20 of 2254 rows
1 to 20 of 2641 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
35220D1Rat291641102813953102814117Ratregion
1632415D1Got4102021102927108102927312Ratregion
1634688D1Got3081721103092085103092259Ratregion
1640935D1Got4431351103648288103648423Ratregion
5066814AU0481351261103829984103830110Ratregion
5066484AU0483291991104054313104054516Ratregion
5068440AU0471432811104315928104316209Ratregion
5500733A005V4014451104615367104616812Ratregion
1630332D1Got3142621105390396105390658Ratregion
5505165Trib12481105391709105391899Ratregion
1636200D1Got4062891105906176105906465Ratregion
5073760RH1376221641105981200105981364Ratregion
5049942RH1337701931105983271105983464Ratregion
5066524AU0483061081106016691106016801Ratregion
34381D1Mgh71411106047847106047988Ratregion
42272D1Rat4901871106130307106130494Ratregion
5505572UniSTS:4831566611106623061106623722Ratregion
5080766RH1417691921106625204106625396Ratregion
5084166AI2340921671106652090106652257Ratregion
5073066RH1372162021106671933106672135Ratregion
1 to 20 of 2641 rows

Flank 1: (D1Rat29)
Rat AssemblyChrPosition (strand)Source
GRCr81111,949,780 - 111,949,944 (+)Marker Load Pipeline
mRatBN7.21102,813,953 - 102,814,117 (+)MAPPER
Rnor_6.01108,986,301 - 108,986,462NCBI
Rnor_5.01110,018,554 - 110,018,715UniSTS
RGSC_v3.41103,149,923 - 103,150,085RGD
RGSC_v3.41103,149,924 - 103,150,085UniSTS
RGSC_v3.11103,228,034 - 103,228,196RGD
Celera197,121,826 - 97,121,987UniSTS
RH 3.4 Map1951.6UniSTS
RH 3.4 Map1951.6RGD
SHRSP x BN Map151.4199UniSTS
SHRSP x BN Map151.4199RGD
FHH x ACI Map152.26RGD
Peak: (D1Rat278)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21165,279,278 - 165,279,420 (+)MAPPER
Rnor_6.01175,980,731 - 175,980,872NCBI
Rnor_5.01182,965,533 - 182,965,674UniSTS
RGSC_v3.41168,930,689 - 168,930,831RGD
RGSC_v3.41168,930,690 - 168,930,831UniSTS
RGSC_v3.11169,041,353 - 169,041,494RGD
Celera1163,167,625 - 163,167,766UniSTS
RH 3.4 Map11330.1UniSTS
RH 3.4 Map11330.1RGD
SHRSP x BN Map183.4799UniSTS
SHRSP x BN Map183.4799RGD
Flank 2: (D1Mit18)
Rat AssemblyChrPosition (strand)Source
GRCr81228,180,243 - 228,180,370 (+)Marker Load Pipeline
mRatBN7.21218,753,689 - 218,753,816 (+)MAPPER
Rnor_6.01238,830,408 - 238,830,534NCBI
Rnor_5.01246,118,980 - 246,119,106UniSTS
RGSC_v3.41224,426,266 - 224,426,393RGD
RGSC_v3.41224,426,267 - 224,426,393UniSTS
RGSC_v3.11224,590,289 - 224,590,416RGD
Celera1216,008,916 - 216,009,036UniSTS
RH 2.0 Map11183.8RGD
SHRSP x BN Map1116.5799RGD
FHH x ACI Map1106.87RGD
Cytogenetic Map1 RGD


1 to 10 of 222 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat

1 to 10 of 222 rows


Database
Acc Id
Source(s)
NCBI Gene Bp246

Note Type Note Reference
qtl_cross_type intercross  
qtl_statistics_details linkage analysis performed with Mapmaker; parametric analysis used for traits with a normal distribution, for others nonparametric analysis used 1302893