Fgfr2 (fibroblast growth factor receptor 2) - Rat Genome Database

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Gene: Fgfr2 (fibroblast growth factor receptor 2) Rattus norvegicus
Analyze
Symbol: Fgfr2
Name: fibroblast growth factor receptor 2
RGD ID: 2611
Description: Exhibits fibroblast growth factor binding activity and fibroblast growth factor-activated receptor activity. Involved in several processes, including cellular response to growth factor stimulus; cellular response to retinoic acid; and positive regulation of smooth muscle cell proliferation. Localizes to cell surface; cytoplasm; and nucleus. Predicted to colocalize with collagen-containing extracellular matrix. Used to study prostate cancer and retinitis pigmentosa. Biomarker of hypospadias. Human ortholog(s) of this gene implicated in several diseases, including Antley-Bixler syndrome; Beare-Stevenson cutis gyrata syndrome; Jackson-Weiss syndrome; LADD syndrome; and synostosis (multiple). Orthologous to human FGFR2 (fibroblast growth factor receptor 2); PARTICIPATES IN fibroblast growth factor signaling pathway; endocytosis pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 1-(5-isoquinolinesulfonyl)-2-methylpiperazine; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21184,745,418 - 184,850,655 (-)NCBI
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01200,590,951 - 200,696,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01207,626,732 - 207,731,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41189,482,975 - 189,589,279 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11189,667,865 - 189,734,790 (-)NCBI
Celera1182,362,666 - 182,467,651 (-)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acneiform Eruptions  (ISO)
acrocephalosyndactylia  (ISO)
adenoid cystic carcinoma  (ISO)
ankylosis  (ISO)
Anorectal Malformations  (IEP)
Antley-Bixler syndrome  (ISO)
ANTLEY-BIXLER SYNDROME WITHOUT GENITAL ANOMALIES OR DISORDERED STEROIDOGENESIS  (ISO)
Beare-Stevenson cutis gyrata syndrome  (ISO)
Bent Bone Dysplasia Syndrome  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
Burns, Chemical  (ISO)
cholangiocarcinoma  (ISO)
cleft lip  (ISO)
cleft palate  (ISO)
colorectal cancer  (ISO)
Congenital Limb Deformities  (ISO)
Craniofacial Abnormalities  (ISO)
craniosynostosis  (ISO)
Craniosynostosis Syndrome, Autosomal Recessive  (ISO)
Crouzon syndrome  (ISO)
developmental coordination disorder  (ISO)
duodenal atresia  (ISO)
dysgerminoma  (ISO)
endometrial cancer  (ISO)
endometrial carcinoma  (ISO)
Endometrial Neoplasms  (ISO)
Endometrioid Carcinomas  (ISO)
endometriosis  (ISO)
Epstein-Barr Virus Infections  (ISO)
esophageal carcinoma  (ISO)
gastric adenocarcinoma  (ISO)
genetic disease  (ISO)
Head and Neck Neoplasms  (ISO)
hepatocellular carcinoma  (ISO)
Hypertelorism  (ISO)
hypospadias  (IEP)
intellectual disability  (ISO)
intestinal atresia  (ISS)
Jackson-Weiss syndrome  (ISO)
LADD syndrome  (ISO)
liver cirrhosis  (ISO)
lung adenocarcinoma  (ISO)
Lung Neoplasms  (ISO)
lung squamous cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
Multiple Abnormalities  (ISO)
Nasopharyngeal Neoplasms  (ISO)
Ovarian Neoplasms  (ISO)
Pfeiffer syndrome  (ISO)
Plagiocephaly, Nonsynostotic  (ISO)
pre-eclampsia  (ISS)
prostate cancer  (IDA,ISO)
prostate carcinoma in situ  (ISO)
PTEN hamartoma tumor syndrome  (ISO)
retinitis pigmentosa  (IDA)
Saethre-Chotzen syndrome  (ISO)
Scaphocephaly, Maxillary Retrusion, and Mental Retardation  (ISO)
Skin Abnormalities  (ISO)
skin disease  (ISO)
spina bifida  (ISO)
split hand-foot malformation  (ISO)
squamous cell carcinoma  (ISO)
stomach cancer  (ISO)
Stomach Neoplasms  (ISO)
Tooth Abnormalities  (ISO)
Tracheoesophageal Fistula  (IEP)
transitional cell carcinoma  (ISO)
umbilical hernia  (ISO)
urinary bladder cancer  (ISO)
uterine cancer  (ISO)
uterine carcinosarcoma  (ISO)
Uterine Cervical Neoplasms  (ISO)
Volvulus Of Midgut  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (EXP)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
3-phenylprop-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetone  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (EXP)
ANTU  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bifenthrin  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
Butylbenzyl phthalate  (EXP)
Butylparaben  (EXP)
cadmium atom  (ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cumene hydroperoxide  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
diazepam  (ISO)
dibutyl phthalate  (EXP)
diethyl malate  (ISO)
dioxygen  (ISO)
dipentyl phthalate  (EXP)
disodium selenite  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (EXP)
enzacamene  (EXP)
ethanol  (EXP,ISO)
flavonoids  (EXP)
fluprostenol  (EXP)
fluvalinate  (ISO)
genistein  (ISO)
heparan sulfate  (ISO)
heparin  (EXP,ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
lenalidomide  (ISO)
linuron  (EXP)
manganese(II) chloride  (EXP)
menadione  (ISO)
mercury dibromide  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mifepristone  (EXP)
monosodium L-glutamate  (ISO)
N-(1-naphthyl)ethylenediamine  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (EXP)
nitroglycerin  (EXP)
O-methyleugenol  (ISO)
oxaliplatin  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentane-2,3-dione  (EXP)
phenobarbital  (ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pirinixic acid  (ISO)
ponatinib  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
prostaglandin F2alpha  (EXP)
raloxifene  (ISO)
reactive oxygen species  (ISO)
Rebamipide  (EXP)
silicon dioxide  (ISO)
sodium dichromate  (ISO)
sucrose octasulfate  (ISO)
suramin  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thimerosal  (ISO)
tipifarnib  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vanillin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (ISO)
animal organ morphogenesis  (ISO)
axonogenesis  (ISO)
bone development  (ISO)
bone mineralization  (ISO)
bone morphogenesis  (ISO)
branch elongation involved in salivary gland morphogenesis  (ISO)
branching involved in labyrinthine layer morphogenesis  (ISO)
branching involved in prostate gland morphogenesis  (ISO)
branching involved in salivary gland morphogenesis  (ISO)
branching morphogenesis of a nerve  (ISO)
bud elongation involved in lung branching  (ISO)
cell fate commitment  (ISO)
cell-cell signaling  (ISO)
cellular response to fibroblast growth factor stimulus  (IEP)
cellular response to retinoic acid  (IEP)
cellular response to transforming growth factor beta stimulus  (IEP)
coronal suture morphogenesis  (ISO)
digestive tract development  (ISO)
embryonic cranial skeleton morphogenesis  (ISO)
embryonic digestive tract morphogenesis  (ISO)
embryonic organ development  (ISO)
embryonic organ morphogenesis  (ISO)
embryonic pattern specification  (ISO)
endochondral bone growth  (IEP)
endodermal digestive tract morphogenesis  (ISO)
epidermis morphogenesis  (ISO)
epithelial cell differentiation  (ISO)
epithelial cell proliferation involved in salivary gland morphogenesis  (ISO)
epithelial to mesenchymal transition  (IDA)
epithelial tube branching involved in lung morphogenesis  (ISO)
fibroblast growth factor receptor signaling pathway  (IDA,IMP,ISO)
fibroblast growth factor receptor signaling pathway involved in hemopoiesis  (ISO)
fibroblast growth factor receptor signaling pathway involved in mammary gland specification  (ISO)
fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptotic process in bone marrow cell  (ISO)
fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development  (ISO)
fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow  (ISO)
gland morphogenesis  (ISO)
hair follicle morphogenesis  (ISO)
in utero embryonic development  (ISO)
inner ear morphogenesis  (ISO)
lacrimal gland development  (ISO)
lateral sprouting from an epithelium  (ISO)
lens fiber cell development  (ISO)
limb bud formation  (ISO)
lung alveolus development  (ISO)
lung development  (ISO)
lung lobe morphogenesis  (ISO)
lung-associated mesenchyme development  (ISO)
mammary gland bud formation  (ISO)
membranous septum morphogenesis  (ISO)
mesenchymal cell differentiation  (ISO)
mesenchymal cell differentiation involved in lung development  (ISO)
mesenchymal cell proliferation involved in lung development  (ISO)
mesodermal cell differentiation  (IEP)
midbrain development  (ISO)
morphogenesis of embryonic epithelium  (ISO)
multicellular organism development  (IBA)
negative regulation of cell population proliferation  (ISO)
negative regulation of epithelial cell proliferation  (IDA)
negative regulation of keratinocyte proliferation  (ISO)
negative regulation of mitotic nuclear division  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neuromuscular junction development  (ISO)
odontogenesis  (ISO)
orbitofrontal cortex development  (ISO)
organ growth  (ISO)
otic vesicle formation  (ISO)
outflow tract septum morphogenesis  (ISO)
peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of cardiac muscle cell proliferation  (ISO)
positive regulation of cell cycle  (ISO)
positive regulation of cell division  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of epithelial cell proliferation  (ISO)
positive regulation of epithelial cell proliferation involved in lung morphogenesis  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of kinase activity  (IBA)
positive regulation of MAPK cascade  (ISO)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of phospholipase activity  (ISO)
positive regulation of smooth muscle cell proliferation  (IMP)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of Wnt signaling pathway  (ISO)
post-embryonic development  (ISO)
prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis  (ISO)
prostate epithelial cord elongation  (ISO)
prostate gland morphogenesis  (ISO)
protein autophosphorylation  (ISO)
pyramidal neuron development  (ISO)
regulation of cell population proliferation  (ISO)
regulation of epithelial cell proliferation  (ISO)
regulation of ERK1 and ERK2 cascade  (ISO)
regulation of morphogenesis of a branching structure  (ISO)
regulation of smooth muscle cell differentiation  (ISO)
regulation of smoothened signaling pathway  (ISO)
reproductive structure development  (ISO)
response to ethanol  (IEP)
response to lipopolysaccharide  (IEP)
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development  (ISO)
synaptic vesicle transport  (ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (IBA)
ureteric bud development  (ISO)
ventricular cardiac muscle tissue morphogenesis  (ISO)
ventricular zone neuroblast division  (ISO)
wound healing  (IEP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
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Additional References at PubMed
PMID:7987400   PMID:8386828   PMID:8663044   PMID:8875318   PMID:8889548   PMID:9435295   PMID:9528792   PMID:9700203   PMID:10518547   PMID:10821755   PMID:10830168   PMID:10934262  
PMID:11312155   PMID:11731698   PMID:11782400   PMID:11834506   PMID:11891329   PMID:11923311   PMID:12608893   PMID:12666202   PMID:12756187   PMID:12828933   PMID:12947022   PMID:14530295  
PMID:14645542   PMID:15126509   PMID:15199404   PMID:15229180   PMID:15234214   PMID:15509736   PMID:15601847   PMID:15621532   PMID:15629145   PMID:15684416   PMID:15843416   PMID:15944199  
PMID:15972105   PMID:16442091   PMID:16540513   PMID:16597614   PMID:16618415   PMID:16687131   PMID:16720875   PMID:16778080   PMID:16844695   PMID:16856175   PMID:16963563   PMID:16989802  
PMID:17202188   PMID:17215304   PMID:17418794   PMID:17471512   PMID:17687036   PMID:17708356   PMID:17951031   PMID:17959718   PMID:18039182   PMID:18184727   PMID:18187602   PMID:18363829  
PMID:18455718   PMID:18533146   PMID:19053057   PMID:19060208   PMID:19103595   PMID:19224135   PMID:19389359   PMID:19410646   PMID:20345253   PMID:20410112   PMID:21412257   PMID:21492869  
PMID:21550054   PMID:21691921   PMID:21994076   PMID:23136392   PMID:23564461   PMID:24058167   PMID:32626929  


Genomics

Comparative Map Data
Fgfr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21184,745,418 - 184,850,655 (-)NCBI
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01200,590,951 - 200,696,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01207,626,732 - 207,731,841 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41189,482,975 - 189,589,279 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11189,667,865 - 189,734,790 (-)NCBI
Celera1182,362,666 - 182,467,651 (-)NCBICelera
Cytogenetic Map1q37NCBI
FGFR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10121,478,334 - 121,598,458 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl10121,478,332 - 121,598,458 (-)EnsemblGRCh38hg38GRCh38
GRCh3810121,478,330 - 121,598,458 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710123,237,844 - 123,357,972 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610123,227,845 - 123,347,962 (-)NCBINCBI36hg18NCBI36
Build 3410123,266,837 - 123,347,907NCBI
Celera10116,970,097 - 117,089,799 (-)NCBI
Cytogenetic Map10q26.13NCBI
HuRef10116,868,799 - 116,988,666 (-)NCBIHuRef
CHM1_110123,522,903 - 123,642,701 (-)NCBICHM1_1
Fgfr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397129,764,181 - 129,868,538 (-)NCBIGRCm39mm39
GRCm39 Ensembl7129,764,181 - 132,725,079 (-)Ensembl
GRCm387130,162,451 - 130,266,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7130,162,451 - 133,123,350 (-)EnsemblGRCm38mm10GRCm38
MGSCv377137,305,965 - 137,410,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv367129,954,867 - 130,057,411 (-)NCBImm8
Celera7129,989,855 - 130,093,942 (-)NCBICelera
Cytogenetic Map7F3NCBI
Fgfr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555512,321,190 - 2,427,000 (-)NCBIChiLan1.0ChiLan1.0
FGFR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110121,469,735 - 121,588,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10121,469,735 - 121,588,815 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010118,055,854 - 118,175,440 (-)NCBIMhudiblu_PPA_v0panPan3
FGFR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12831,303,882 - 31,411,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2831,303,894 - 31,411,621 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2831,443,692 - 31,545,836 (-)NCBI
ROS_Cfam_1.02831,838,529 - 31,945,124 (-)NCBI
UMICH_Zoey_3.12831,369,550 - 31,471,773 (-)NCBI
UNSW_CanFamBas_1.02831,390,735 - 31,492,943 (-)NCBI
UU_Cfam_GSD_1.02831,595,945 - 31,698,233 (-)NCBI
Fgfr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721314,955,026 - 15,055,733 (+)NCBI
SpeTri2.0NW_00493648610,506,680 - 10,606,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGFR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14131,181,710 - 131,579,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114131,183,095 - 131,285,001 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214142,500,502 - 142,565,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGFR2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19114,234,344 - 114,354,736 (-)NCBI
ChlSab1.1 Ensembl9114,234,250 - 114,354,704 (-)Ensembl
Vero_WHO_p1.0NW_02366604875,522,971 - 75,644,166 (-)NCBI
Fgfr2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473725,052,698 - 25,158,346 (+)NCBI

Position Markers
D1Smu5  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,586,180 - 200,586,391NCBIRnor6.0
Rnor_5.01207,621,961 - 207,622,172UniSTSRnor5.0
RGSC_v3.41189,478,204 - 189,478,415UniSTSRGSC3.4
Celera1182,357,916 - 182,358,106UniSTS
Cytogenetic Map1q37UniSTS
RH11106  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,627,842 - 200,627,975NCBIRnor6.0
Rnor_5.01207,663,652 - 207,663,785UniSTSRnor5.0
RGSC_v3.41189,520,207 - 189,520,340UniSTSRGSC3.4
Celera1182,399,275 - 182,399,408UniSTS
Cytogenetic Map1q37UniSTS
RH143520  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,694,409 - 200,694,555NCBIRnor6.0
Rnor_5.01207,729,322 - 207,729,468UniSTSRnor5.0
RGSC_v3.41189,586,760 - 189,586,906UniSTSRGSC3.4
Celera1182,465,132 - 182,465,278UniSTS
RH 3.4 Map11382.4UniSTS
Cytogenetic Map1q37UniSTS
RH140672  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,696,570 - 200,696,749NCBIRnor6.0
Rnor_5.01207,731,483 - 207,731,662UniSTSRnor5.0
RGSC_v3.41189,588,921 - 189,589,100UniSTSRGSC3.4
Celera1182,467,293 - 182,467,472UniSTS
RH 3.4 Map11383.69UniSTS
Cytogenetic Map1q37UniSTS
BM383187  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,623,696 - 200,623,850NCBIRnor6.0
Rnor_5.01207,659,506 - 207,659,660UniSTSRnor5.0
RGSC_v3.41189,516,061 - 189,516,215UniSTSRGSC3.4
Celera1182,395,108 - 182,395,262UniSTS
RH 3.4 Map11418.99UniSTS
Cytogenetic Map1q37UniSTS
PMC20217P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,627,782 - 200,627,926NCBIRnor6.0
Rnor_5.01207,663,592 - 207,663,736UniSTSRnor5.0
RGSC_v3.41189,520,147 - 189,520,291UniSTSRGSC3.4
Celera1182,399,215 - 182,399,359UniSTS
Cytogenetic Map1q37UniSTS
Fgfr2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01200,672,201 - 200,672,319NCBIRnor6.0
Rnor_5.01207,707,977 - 207,708,095UniSTSRnor5.0
RGSC_v3.41189,564,823 - 189,564,941UniSTSRGSC3.4
Celera1182,443,660 - 182,443,778UniSTS
Cytogenetic Map1q37UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)199983293216325819Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1175447029220447029Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1175447029220447029Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1184419946215097919Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1184419946215097919Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1126240667217054291Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1193220385238220385Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1156446196214277437Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1189514504234514504Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1198585664236763415Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)199983293216213510Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1189514504214277437Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1197963658242963658Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
2325725Eae31Experimental allergic encephalomyelitis QTL 31nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1193968438205603226Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130779320219238476Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1197187728230420772Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1189170900234170900Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1189170900234170900Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1189170900234170900Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1189170900234170900Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1189170900234170900Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1189170900234170900Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1198446729240017341Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1194554354239554354Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1122614824201146953Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1108986301219232156Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1161784169219232156Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1108986301219232156Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1167394665219232156Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169219232156Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1161784169219232156Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1161784169219232156Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1185390068230390068Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1196738546241738546Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700233490237Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1198655722244992610Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1177235071208786962Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1169971964214971964Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1190282646235282646Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1188850303233850303Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1167027868212027868Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1175462885220462885Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1154337847215828102Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1198572999214277437Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1166577232211577232Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1197187728238220385Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1106002252202571904Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1194872362239872362Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1101
Count of miRNA genes:222
Interacting mature miRNAs:266
Transcripts:ENSRNOT00000022253, ENSRNOT00000022331, ENSRNOT00000065448, ENSRNOT00000068183
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 42 33 1 33 74 26 34 11
Low 26 15 8 18 8 8 9 9 5 8
Below cutoff 3 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF147757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF294649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF294650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF332557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF456422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ312745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW531062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF420170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB716134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB769194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB777398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB780941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF109832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO397781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D83494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D83495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV718561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U59800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022253   ⟹   ENSRNOP00000022253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000022331   ⟹   ENSRNOP00000022331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000065448   ⟹   ENSRNOP00000061479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000068183   ⟹   ENSRNOP00000059005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1200,590,953 - 200,696,928 (-)Ensembl
RefSeq Acc Id: NM_001109892   ⟹   NP_001103362
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_001109893   ⟹   NP_001103363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_001109894   ⟹   NP_001103364
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_001109895   ⟹   NP_001103365
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_001109896   ⟹   NP_001103366
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: NM_012712   ⟹   NP_036844
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,626 (-)NCBI
Rnor_6.01200,590,951 - 200,696,928 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
RGSC_v3.41189,482,975 - 189,589,279 (-)RGD
Celera1182,362,666 - 182,467,651 (-)RGD
Sequence:
RefSeq Acc Id: XM_006230389   ⟹   XP_006230451
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,655 (-)NCBI
Rnor_6.01200,590,951 - 200,696,946 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230390   ⟹   XP_006230452
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,654 (-)NCBI
Rnor_6.01200,590,951 - 200,696,946 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230392   ⟹   XP_006230454
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,746,951 - 184,850,655 (-)NCBI
Rnor_6.01200,592,528 - 200,696,946 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006230393   ⟹   XP_006230455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,850,653 (-)NCBI
Rnor_6.01200,590,951 - 200,696,945 (-)NCBI
Rnor_5.01207,626,732 - 207,731,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008759861   ⟹   XP_008758083
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,828,617 (-)NCBI
Rnor_6.01200,590,951 - 200,677,146 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101195   ⟹   XP_038957123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,846,673 (-)NCBI
RefSeq Acc Id: XM_039101196   ⟹   XP_038957124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,848,415 (-)NCBI
RefSeq Acc Id: XM_039101199   ⟹   XP_038957127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21184,745,418 - 184,847,982 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001103362 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103363 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103364 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103365 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103366 (Get FASTA)   NCBI Sequence Viewer  
  NP_036844 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230451 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230452 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230454 (Get FASTA)   NCBI Sequence Viewer  
  XP_006230455 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758083 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957127 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA02628 (Get FASTA)   NCBI Sequence Viewer  
  AAA02629 (Get FASTA)   NCBI Sequence Viewer  
  AAA02690 (Get FASTA)   NCBI Sequence Viewer  
  AAA02691 (Get FASTA)   NCBI Sequence Viewer  
  AAA02692 (Get FASTA)   NCBI Sequence Viewer  
  AAA02693 (Get FASTA)   NCBI Sequence Viewer  
  AAA02694 (Get FASTA)   NCBI Sequence Viewer  
  AAB02867 (Get FASTA)   NCBI Sequence Viewer  
  AAB03225 (Get FASTA)   NCBI Sequence Viewer  
  AAD31529 (Get FASTA)   NCBI Sequence Viewer  
  AAD31530 (Get FASTA)   NCBI Sequence Viewer  
  AAG31575 (Get FASTA)   NCBI Sequence Viewer  
  AAG31576 (Get FASTA)   NCBI Sequence Viewer  
  AAL77411 (Get FASTA)   NCBI Sequence Viewer  
  AAL77412 (Get FASTA)   NCBI Sequence Viewer  
  BAA77278 (Get FASTA)   NCBI Sequence Viewer  
  BAA77279 (Get FASTA)   NCBI Sequence Viewer  
  CAC37408 (Get FASTA)   NCBI Sequence Viewer  
  EDM17149 (Get FASTA)   NCBI Sequence Viewer  
  EDM17150 (Get FASTA)   NCBI Sequence Viewer  
  EDM17151 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036844   ⟸   NM_012712
- Peptide Label: isoform a
- UniProtKB: F1LSG7 (UniProtKB/TrEMBL),   Q63236 (UniProtKB/TrEMBL),   Q63240 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103362   ⟸   NM_001109892
- Peptide Label: isoform b
- UniProtKB: Q63240 (UniProtKB/TrEMBL),   F1LNW0 (UniProtKB/TrEMBL),   Q63236 (UniProtKB/TrEMBL),   Q63237 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103363   ⟸   NM_001109893
- Peptide Label: isoform c
- UniProtKB: F1LRU8 (UniProtKB/TrEMBL),   Q63238 (UniProtKB/TrEMBL),   Q63240 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103364   ⟸   NM_001109894
- Peptide Label: isoform d
- UniProtKB: Q63236 (UniProtKB/TrEMBL),   Q63240 (UniProtKB/TrEMBL),   Q63242 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103365   ⟸   NM_001109895
- Peptide Label: isoform e
- UniProtKB: F1LN06 (UniProtKB/TrEMBL),   Q63239 (UniProtKB/TrEMBL),   Q63240 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103366   ⟸   NM_001109896
- Peptide Label: isoform f
- UniProtKB: Q63236 (UniProtKB/TrEMBL),   Q63240 (UniProtKB/TrEMBL),   Q63241 (UniProtKB/TrEMBL),   Q63242 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230455   ⟸   XM_006230393
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006230452   ⟸   XM_006230390
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006230451   ⟸   XM_006230389
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006230454   ⟸   XM_006230392
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008758083   ⟸   XM_008759861
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000061479   ⟸   ENSRNOT00000065448
RefSeq Acc Id: ENSRNOP00000022331   ⟸   ENSRNOT00000022331
RefSeq Acc Id: ENSRNOP00000022253   ⟸   ENSRNOT00000022253
RefSeq Acc Id: ENSRNOP00000059005   ⟸   ENSRNOT00000068183
RefSeq Acc Id: XP_038957124   ⟸   XM_039101196
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957127   ⟸   XM_039101199
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957123   ⟸   XM_039101195
- Peptide Label: isoform X1
Protein Domains
I-set   Ig-like   Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690466
Promoter ID:EPDNEW_R990
Type:initiation region
Name:Fgfr2_1
Description:fibroblast growth factor receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01200,696,934 - 200,696,994EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2611 AgrOrtholog
Ensembl Genes ENSRNOG00000016374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022253 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000022331 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000059005 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000061479 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022253 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000022331 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000065448 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000068183 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FGFR_TM UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_fibroblast_GF_rcpt UniProtKB/TrEMBL
KEGG Report rno:25022 UniProtKB/TrEMBL
NCBI Gene 25022 ENTREZGENE
Pfam FGFR3_TM UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/TrEMBL
PhenoGen Fgfr2 PhenoGen
PIRSF FGFR UniProtKB/TrEMBL
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TyrKc