Fth1 (ferritin heavy chain 1) - Rat Genome Database

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Gene: Fth1 (ferritin heavy chain 1) Rattus norvegicus
Analyze
Symbol: Fth1
Name: ferritin heavy chain 1
RGD ID: 2635
Description: Predicted to have ferric iron binding activity; ferrous iron binding activity; and ferroxidase activity. Involved in negative regulation of fibroblast proliferation and negative regulation of necrotic cell death. Predicted to localize to autolysosome. Biomarker of congestive heart failure and hepatocellular carcinoma. Human ortholog(s) of this gene implicated in hemochromatosis type 5. Orthologous to human FTH1 (ferritin heavy chain 1); PARTICIPATES IN iron storage pathway; porphyrin and chlorophyll metabolic pathway; INTERACTS WITH 2-acetamidofluorene; 3-chloropropane-1,2-diol; 3-methyladenine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ferritin H subunit; ferritin heavy chain; Ferritin subunit H; ferritin, heavy polypeptide 1; Fth
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21206,627,142 - 206,629,430 (+)NCBI
Rnor_6.0 Ensembl1226,030,938 - 226,033,228 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01226,030,940 - 226,033,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01232,979,122 - 232,981,410 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,430,453 - 212,432,741 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,588,882 - 212,591,171 (+)NCBI
Celera1204,122,676 - 204,124,964 (+)NCBICelera
RH 3.4 Map14258.8RGD
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-benzothiazole-2-thiol  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-D  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-acetamidofluorene  (EXP)
2-hydroxyethyl methacrylate  (ISO)
2-tert-butylhydroquinone  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methyladenine  (EXP,ISO)
3-phenylprop-2-enal  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7beta-aminocephalosporanic acid  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP)
all-trans-retinol  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
ammonium hexachloroplatinate  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
artesunate  (ISO)
asbestos  (ISO)
atorvastatin calcium  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
cerium trichloride  (ISO)
chloroacetaldehyde  (ISO)
chloropicrin  (ISO)
chloroquine  (EXP,ISO)
chlorpromazine  (ISO)
citraconic acid  (ISO)
clobetasol  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
cyfluthrin  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (EXP,ISO)
deferiprone  (EXP)
desferrioxamine B  (EXP,ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diltiazem  (ISO)
dimethyl fumarate  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP,ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (EXP)
epichlorohydrin  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
ferric ammonium citrate  (ISO)
fipronil  (EXP)
flavonoids  (EXP,ISO)
flutamide  (EXP)
folic acid  (ISO)
fructose  (EXP)
gamma-linolenic acid  (ISO)
ginkgolide B  (ISO)
glucose  (EXP,ISO)
glutathione  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hemin  (EXP,ISO)
hexadecanoic acid  (ISO)
hexamethylene diisocyanate  (ISO)
hydralazine  (ISO)
hydroquinone  (ISO)
iron atom  (EXP,ISO)
iron dextran  (ISO)
iron trichloride  (ISO)
iron(0)  (EXP,ISO)
iron(III) citrate  (ISO)
isoflavones  (ISO)
L-ascorbic acid  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methylnicotinate  (ISO)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
nimodipine  (ISO)
ochratoxin A  (ISO)
oleic acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
pentaerythritol tetranitrate  (ISO)
perfluorododecanoic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pinosylvin  (ISO)
pirinixic acid  (ISO)
potassium bromate  (ISO)
potassium nitrate  (ISO)
rac-1,2-dichloropropane  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
Ro 41-5253  (EXP)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium nitrate  (ISO)
stavudine  (EXP)
streptozocin  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trans-pinosylvin  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
verapamil  (ISO)
wortmannin  (ISO)
zileuton  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Ferreira C, etal., J Biol Chem 2000 Feb 4;275(5):3021-4.
2. Finazzi D and Arosio P, Arch Toxicol. 2014 Oct;88(10):1787-802. doi: 10.1007/s00204-014-1329-0. Epub 2014 Aug 15.
3. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. GOA data from the GO Consortium
5. Hou H, etal., Clin Exp Immunol. 2020 Jul;201(1):76-84. doi: 10.1111/cei.13450. Epub 2020 May 15.
6. Kato J, etal., Am J Hum Genet 2001 Jul;69(1):191-7. Epub 2001 May 24.
7. Krawetz SA, etal., DNA 1986 Oct;5(5):427-35.
8. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
9. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
10. Li Y, etal., Biol Trace Elem Res. 2012 Dec;150(1-3):242-8. doi: 10.1007/s12011-012-9455-0. Epub 2012 May 26.
11. Murray MT, etal., Proc Natl Acad Sci U S A 1987 Nov;84(21):7438-42.
12. NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. OMIM Disease Annotation Pipeline
14. Omiya S, etal., J Mol Cell Cardiol. 2009 Jan;46(1):59-66. Epub 2008 Oct 19.
15. Pipeline to import KEGG annotations from KEGG into RGD
16. RGD automated data pipeline
17. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. RGD automated import pipeline for gene-chemical interactions
19. RGD comprehensive gene curation
20. Sengupta R, etal., J Neurosci. 2009 Feb 25;29(8):2534-44.
21. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
22. Ursini MV and de Franciscis V, Biochem Biophys Res Commun 1988 Jan 15;150(1):287-95.
23. Wu CG, etal., Carcinogenesis 1997 Jan;18(1):47-52.
24. Wu KJ, etal., Science. 1999 Jan 29;283(5402):676-9.
25. Zhang Y, etal., Diabetes Obes Metab. 2020 May 14. doi: 10.1111/dom.14086.
Additional References at PubMed
PMID:6546756   PMID:11872741   PMID:18056970   PMID:18614015   PMID:18835382   PMID:19056867   PMID:21630459   PMID:21886823   PMID:22207220   PMID:22585610   PMID:23376485   PMID:23533145  
PMID:25327288   PMID:26203149   PMID:30046590  


Genomics

Comparative Map Data
Fth1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21206,627,142 - 206,629,430 (+)NCBI
Rnor_6.0 Ensembl1226,030,938 - 226,033,228 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01226,030,940 - 226,033,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01232,979,122 - 232,981,410 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,430,453 - 212,432,741 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,588,882 - 212,591,171 (+)NCBI
Celera1204,122,676 - 204,124,964 (+)NCBICelera
RH 3.4 Map14258.8RGD
Cytogenetic Map1q43NCBI
FTH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,959,718 - 61,967,634 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,964,285 - 61,967,634 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,731,757 - 61,735,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,488,333 - 61,491,708 (-)NCBINCBI36hg18NCBI36
Build 341161,488,334 - 61,491,708NCBI
Celera1159,067,058 - 59,070,433 (-)NCBI
Cytogenetic Map11q12.3NCBI
HuRef1158,059,745 - 58,063,103 (-)NCBIHuRef
CHM1_11161,614,953 - 61,618,328 (-)NCBICHM1_1
Fth1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,957,964 - 9,962,475 (+)NCBIGRCm39mm39
GRCm39 Ensembl199,957,962 - 9,962,462 (+)Ensembl
GRCm38199,980,600 - 9,985,111 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,980,598 - 9,985,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,057,193 - 10,059,582 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,049,748 - 10,052,137 (+)NCBImm8
Celera1910,680,030 - 10,682,419 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.23NCBI
Fth1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555115,772,374 - 5,773,224 (+)NCBIChiLan1.0ChiLan1.0
FTH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11160,687,517 - 60,690,080 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01157,329,163 - 57,332,248 (-)NCBIMhudiblu_PPA_v0panPan3
FTH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,466,167 - 54,468,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,466,023 - 54,468,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
UMICH_Zoey_3.12832,593,900 - 32,594,536 (-)NCBI
UNSW_CanFamBas_1.02832,618,740 - 32,619,377 (-)NCBI
Fth1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,005,083 - 11,006,769 (+)NCBI
SpeTri2.0NW_0049365811,118,905 - 1,120,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FTH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.129,535,051 - 9,537,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,983,179 - 8,986,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FTH1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,837,533 - 11,840,926 (+)NCBI
Fth1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926469,870 - 471,142 (+)NCBI

Position Markers
RH94403  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map14258.8UniSTS
Cytogenetic Map3q41UniSTS
Cytogenetic Map1q43UniSTS
RH127322  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q43UniSTS
Cytogenetic Map3q41UniSTS
D1Bda53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21206,627,248 - 206,627,467 (+)MAPPER
Rnor_6.01226,031,047 - 226,031,265NCBIRnor6.0
Rnor_5.01232,979,229 - 232,979,447UniSTSRnor5.0
RGSC_v3.41212,430,560 - 212,430,778UniSTSRGSC3.4
Celera1204,122,783 - 204,123,001UniSTS
Cytogenetic Map1q43UniSTS
BF387442  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21206,629,585 - 206,629,735 (+)MAPPER
Rnor_6.01226,033,384 - 226,033,533NCBIRnor6.0
Rnor_5.01232,981,566 - 232,981,715UniSTSRnor5.0
RGSC_v3.41212,432,897 - 212,433,046UniSTSRGSC3.4
Celera1204,125,120 - 204,125,269UniSTS
RH 3.4 Map11520.4UniSTS
Cytogenetic Map1q43UniSTS
RH124242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21206,629,181 - 206,629,285 (+)MAPPER
mRatBN7.2123,638,719 - 23,638,823 (+)MAPPER
mRatBN7.23136,915,508 - 136,915,612 (+)MAPPER
Rnor_6.01226,032,980 - 226,033,083NCBIRnor6.0
Rnor_6.0125,077,959 - 25,078,062NCBIRnor6.0
Rnor_5.01232,981,162 - 232,981,265UniSTSRnor5.0
Rnor_5.0126,536,032 - 26,536,135UniSTSRnor5.0
RGSC_v3.41212,432,493 - 212,432,596UniSTSRGSC3.4
RGSC_v3.4124,186,378 - 24,186,481UniSTSRGSC3.4
Celera122,350,730 - 22,350,833UniSTS
Celera1204,124,716 - 204,124,819UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map1p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1100131562236763528Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1108986301238830534Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1137787261236763528Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1137787261236763528Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1144634295241482368Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1153834077232297227Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1156446196243311614Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1161784422246226103Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1167394665238830534Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700233490237Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1185390068230390068Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1188850303233850303Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1189170900234170900Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1189170900234170900Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1189170900234170900Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1189170900234170900Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1189170900234170900Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1189170900234170900Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1189170900234170900Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1189514504234514504Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1190282646235282646Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1193220385238220385Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1194554354239554354Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1194872362239872362Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1196738546241738546Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1197187728230420772Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1197187728238220385Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1197963658242963658Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1198446729240017341Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1198585664236763415Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1198655722244992610Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1201146802241482368Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1201358068252480016Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1202571665264802994Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1202571665264802994Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1205195290250195290Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1205603081244401301Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1208517798266948272Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1210360774264802828Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1210652654255652654Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1210960636236763528Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210990171255990171Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1215684498260684498Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1215711860258765521Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1215711860260711860Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1215828102260828102Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1215828102260828102Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1215828102260828102Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1216213318245529710Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1216324817261324817Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1216324817261324817Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1217054291281795785Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1217372257244992610Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1221901238266901238Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1221901238266901238Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1221901238266901238Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1221901238266901238Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221901238266901238Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1222492538267492538Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1225689973247836969Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1225689973270689973Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1225689973270689973Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:101
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000030919
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hepatobiliary system nervous system renal system reproductive system
High 38 52 36 30 39 22 28
Medium 24 2 2
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH002171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M14165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M29330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U58829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000030919   ⟹   ENSRNOP00000037803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1226,030,938 - 226,033,228 (+)Ensembl
RefSeq Acc Id: NM_012848   ⟹   NP_036980
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21206,627,142 - 206,629,430 (+)NCBI
Rnor_6.01226,030,940 - 226,033,228 (+)NCBI
Rnor_5.01232,979,122 - 232,981,410 (+)NCBI
RGSC_v3.41212,430,453 - 212,432,741 (+)RGD
Celera1204,122,676 - 204,124,964 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036980   ⟸   NM_012848
- UniProtKB: P19132 (UniProtKB/Swiss-Prot),   Q66HI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000037803   ⟸   ENSRNOT00000030919
Protein Domains
Ferritin-like diiron

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690762
Promoter ID:EPDNEW_R1287
Type:multiple initiation site
Name:Fth1_1
Description:ferritin heavy chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01226,030,901 - 226,030,961EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2635 AgrOrtholog
Ensembl Genes ENSRNOG00000022619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000037803 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030919 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6922002 IMAGE-MGC_LOAD
  IMAGE:7124353 IMAGE-MGC_LOAD
  IMAGE:7189574 IMAGE-MGC_LOAD
  IMAGE:7191119 IMAGE-MGC_LOAD
  IMAGE:7387633 IMAGE-MGC_LOAD
  IMAGE:7445527 IMAGE-MGC_LOAD
  IMAGE:7446591 IMAGE-MGC_LOAD
InterPro Ferritin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferritin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferritin-like_diiron UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferritin-like_SF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferritin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferritin_DPS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25319 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108755 IMAGE-MGC_LOAD
  MGC:114352 IMAGE-MGC_LOAD
  MGC:125269 IMAGE-MGC_LOAD
  MGC:156674 IMAGE-MGC_LOAD
  MGC:72918 IMAGE-MGC_LOAD
  MGC:93615 IMAGE-MGC_LOAD
  MGC:93616 IMAGE-MGC_LOAD
NCBI Gene 25319 ENTREZGENE
PANTHER PTHR11431 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ferritin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB FTH1 RGD
PhenoGen Fth1 PhenoGen
PROSITE FERRITIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERRITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERRITIN_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47240 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0JPM7_RAT UniProtKB/TrEMBL
  FRIH_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q2TA66_RAT UniProtKB/TrEMBL
  Q5FVS1_RAT UniProtKB/TrEMBL
  Q66HI5 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYV6_RAT UniProtKB/TrEMBL
  Q6P9V2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Fth1  ferritin heavy chain 1  Fth1  ferritin, heavy polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Fth1  ferritin, heavy polypeptide 1  Fth1  ferritin heavy chain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Fth1  ferritin heavy chain 1  Fth1  ferritin, heavy polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Fth1  ferritin, heavy polypeptide 1    Ferritin subunit H  Name updated 625702 APPROVED
2002-06-10 Fth1  Ferritin subunit H      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression overexpressed in rat hepatocellular carcinoma after being induced by diethylnitrosamine, overexpression related to the initiation and progression of tumors 632698
gene_homology 88% similar to human ferritin-H cDNA 632698