Bw39 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw39 (Body weight QTL 39) Rattus norvegicus

Symbol: Bw39
Name: Body weight QTL 39
RGD ID: 1357335
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 3.3
P Value: Not Available
Variance: 32.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81207,243,873 - 252,243,873RGD_MAPPER_PIPELINE
mRatBN7.21197,814,409 - 242,814,409RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01215,828,102 - 260,828,102RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01222,722,921 - 270,717,037RGDRnor5.0
RGSC_v3.41202,906,624 - 247,322,277RGDRGSC3.4
RGSC_v3.11203,094,689 - 247,436,752RGD
Cross Type: backcross
Strains Crossed: BB/OK SHR/Mol 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39Ratobesity  IDA 69707 RGD 


Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39Ratbody weight  IDA 69707 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39Ratcontrol condition  IDA 69707 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39Ratbody weighing method  IDA 69707 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39RatBB/OK  IEA 69707 RGD 
Bw39RatSHR/Mol  IEA 69707 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw39Ratbody mass  IDA 69707 RGD 


#
Reference Title
Reference Citation
1. Mapping of quantitative trait loci for body weight on chromosomes 1 and 4 in the rat. Kovacs P and Kloting I, Biochem Mol Biol Int 1998 Feb;44(2):399-405.
2. Gender-specific genetic determinants of blood pressure and organ weight: pharmacogenetic approach. Ueno T, etal., Physiol Res 2003;52(6):689-700.


1 to 20 of 901 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2870Igf2insulin-like growth factor 21197814409197831802Rat
2314879Mir483microRNA 4831197818396197818468Rat
7711326LOC102548568vegetative cell wall protein gp1-like1197830951197834453Rat
2916Ins2insulin 21197843277197992522Rat
11378084LOC108349673uncharacterized LOC1083496731197950020197994765Rat
3853Thtyrosine hydroxylase1198071500198078832Rat
41341459LOC120099959uncharacterized LOC1200999591198077644198123085Rat
2159Ascl2achaete-scute family bHLH transcription factor 21198148999198151406Rat
1308721Tspan32tetraspanin 321198190128198204447Rat
2315Cd81Cd81 molecule1198235861198251660Rat
1307043Tssc4tumor suppressing subtransferable candidate 41198251986198254810Rat
1310620Trpm5transient receptor potential cation channel, subfamily M, member 51198254956198277824Rat
621503Kcnq1potassium voltage-gated channel subfamily Q member 11198291711198624683Rat
41187783LOC120099963uncharacterized LOC1200999631198355931198361600Rat
727892Cdkn1ccyclin-dependent kinase inhibitor 1C1198655394198658097Rat
1303323Slc22a18solute carrier family 22, member 181198670626198694977Rat
1304755Phlda2pleckstrin homology-like domain, family A, member 21198696897198699292Rat
1305391Nap1l4nucleosome assembly protein 1-like 41198709697198746093Rat
41081613Snora54small nucleolar RNA, H/ACA box 541198727462198727588Rat
1310747Cars1cysteinyl-tRNA synthetase 11198753689198796016Rat

1 to 20 of 901 rows
1 to 20 of 1154 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10445D1Wox251821238755477238755659Ratregion
10446D1Mgh291061238755490238755596Ratregion
10699D1Wox361451201337534201337679Ratregion
10768D1Wox221301197816378197816499Ratregion
10769D1Arb242651197816307197816572Ratregion
11060D1Wox231981206329708206330200Ratregion
11060D1Wox231981206330002206330200Ratregion
11060D1Wox231981206468994206469032Ratregion
11148D1Mgh251961229550480229550676Ratregion
11179D1Arb393281206497320206497652Ratregion
11179D1Arb393281206497320206497652Ratregion
33878D1Mit271951198211513198211706Ratregion
33945D1Mit181271218753689218753816Ratregion
34009D1Mit341051225126575225126682Ratregion
34244D1Mgh101281199050459199050587Ratregion
34517D1Mgh321091241799011241799120Ratregion
11413D1Smu31011198081083198081184Ratregion
36021D1Rat1151601209979959209980119Ratregion
36083D1Rat1191731236036277236036450Ratregion
36219D1Rat3841481223390805223390953Ratregion
1 to 20 of 1154 rows

Flank 1: (Igf2)
Rat AssemblyChrPosition (strand)Source
GRCr81207,243,873 - 207,261,263 (-)NCBI
mRatBN7.21197,814,409 - 197,831,802 (-)NCBI
mRatBN7.2 Ensembl1197,814,410 - 197,823,018 (-)Ensembl
UTH_Rnor_SHR_Utx1206,187,237 - 206,197,377 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01213,273,145 - 213,283,290 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01205,947,308 - 205,957,453 (-)NCBI
Rnor_6.01215,828,102 - 215,839,081 (-)NCBI
Rnor_6.0 Ensembl1215,828,102 - 215,846,911 (-)Ensembl
Rnor_5.01222,722,921 - 222,733,868 (-)NCBI
RGSC_v3.41202,906,624 - 202,915,231 (-)NCBI
RGSC_v3.11203,094,689 - 203,103,297 (-)NCBI
Celera1195,432,460 - 195,442,561 (-)NCBI
Cytogenetic Map1q41NCBI
Flank 2: (D1Mgh12)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01270,716,905 - 270,717,037NCBI
RGSC_v3.41247,322,146 - 247,322,277RGD
RGSC_v3.11247,436,621 - 247,436,752RGD
Celera1238,204,080 - 238,204,181UniSTS
RH 3.4 Map11616.91UniSTS
RH 3.4 Map11616.91RGD
RH 2.0 Map11221.1RGD
SHRSP x BN Map1133.51RGD
Cytogenetic Map1q54UniSTS


1 to 10 of 151 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat

1 to 10 of 151 rows


Database
Acc Id
Source(s)
NCBI Gene Bw39

Note Type Note Reference
qtl_cross_type backcross  
qtl_general significant linkage found only for males 69707