Alc25 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc25 (Alcohol consumption QTL 25) Rattus norvegicus

Symbol: Alc25
Name: Alcohol consumption QTL 25
RGD ID: 8693618
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: calculated ethanol drink intake rate   (CMO:0001615)    
LOD Score: 3.0
P Value: 0.28
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21207,987,464 - 228,627,600RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01227,509,470 - 249,252,048RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01234,574,271 - 256,490,738RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41213,847,769 - 234,642,714RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: BXH/Ipcv HXB/Ipcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Is the Alcohol Deprivation Effect Genetically Mediated? Studies with HXB/BXH Recombinant Inbred Rat Strains. Vanderlinden LA, etal., Alcohol Clin Exp Res. 2014 Jun 24. doi: 10.1111/acer.12471.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307006Ms4a4amembrane spanning 4-domains A4A1208060507208085121Rat
41006787LOC120099990uncharacterized LOC1200999901208070936208079981Rat
2323335Hmgn1-ps2high mobility group nucleosome binding domain 1, pseudogene 21208088793208089355Rat
1583863Ms4a4cmembrane-spanning 4-domains, subfamily A, member 4C1208125063208146338Rat
1589849Ms4a6cmembrane-spanning 4-domains, subfamily A, member 6C1208153504208174721Rat
1590964Eif5-ps11eukaryotic translation initiation factor 5, pseudogene 111208169194208170649Rat
1590971Ms4a4cl1membrane-spanning 4-domains, subfamily A, member 4C like 11208217979208236368Rat
1359381Ms4a6bl1membrane-spanning 4-domains, subfamily A, member 6B-like 11208243561208255400Rat
1311761Ms4a6bmembrane-spanning 4-domains, subfamily A, member 6B1208281016208301771Rat
7598744LOC102551452uncharacterized LOC1025514521208318075208328601Rat
1590996Ms4a4c-ps1membrane-spanning 4-domains, subfamily A, member 4C, pseudogene 11208368380208387638Rat
2323952Ms4a6bl2membrane-spanning 4-domains, subfamily A, member 6B-like 21208398337208405671Rat
1305800Ms4a6amembrane spanning 4-domains A6A1208401465208414831Rat
41134996LOC120100458small nucleolar RNA SNORA171208417326208417423Rat
2598Ms4a2membrane spanning 4-domains A21208440179208448716Rat
1310598Ms4a3membrane spanning 4-domains A31208462300208480129Rat
1590948Oosp2oocyte secreted protein 21208480265208496843Rat
1590944Oosp1oocyte secreted protein 11208515497208547077Rat
40933068Oosp4aoocyte secreted protein family member 4A1208547232208561558Rat
62084Cblifcobalamin binding intrinsic factor1208605983208620231Rat
621005Stx3syntaxin 31208617018208686240Rat
735195Mrpl16mitochondrial ribosomal protein L161208633671208638483Rat
41136175LOC120100478U6atac minor spliceosomal RNA1208668771208668889Rat
1593675Or10v9olfactory receptor family 10 subfamily V member 91208715148208716094Rat
41210029Morf4l1-ps3mortality factor 4 like 1, pseudogene 31208717007208721488Rat
41307266LOC120100495U4 spliceosomal RNA1208755278208755468Rat
1334072Or10v9bolfactory receptor family 10 subfamily V member 9B1208755439208756395Rat
1333276Or10v1olfactory receptor family 10 subfamily V member 11208807725208808654Rat
1305514Patl1PAT1 homolog 1, processing body mRNA decay factor1208831115208862904Rat
41152658LOC120100442small nucleolar RNA SNORA171208851150208851280Rat
41364316LOC120100383small nucleolar RNA SNORA321208855804208855925Rat
41252360Scarna23l1small Cajal body-specific RNA 23 like 11208871701208871824Rat
9107141Rpl27al8ribosomal protein L27A like 81208875347208888586Rat
1308069Osbpoxysterol binding protein1208888697208918511Rat
11491306Trnaf-gaa1transfer RNA phenylalanine (anticodon GAA) 11208927953208928025Rat
11428976Trnak-uuu1transfer RNA lysine (anticodon UUU) 11208932808208932880Rat
11517460Trnaf-gaa2transfer RNA phenylalanine (anticodon GAA) 21208934775208934847Rat
11504103Trnak-uuu2transfer RNA lysine (anticodon UUU) 21208936079208936151Rat
11478896Trnal-uaa2transfer RNA leucine (anticodon UAA) 21208937593208937675Rat
11403555Trnar-ucu1transfer RNA arginine (anticodon UCU) 11208938095208938180Rat
11427576Trnav-uac1transfer RNA valine (anticodon UAC) 11208938423208938495Rat
11499330Trnav-uac2transfer RNA valine (anticodon UAC) 21208938763208938835Rat
2324714Polr2k-ps2RNA polymerase II, I and III subunit K, pseudogene 21208943604208944098Rat
1333895Or4z7-ps1olfactory receptor family 4 subfamily Z member 7, pseudogene 11208949896208950722Rat
1334346Or4d11olfactory receptor family 4 subfamily D member 111208967493208968425Rat
1332621Or4d10olfactory receptor family 4 subfamily D member 101208997300208998235Rat
1333126Or4d10colfactory receptor family 4 subfamily D member 10C1209016663209017598Rat
1333150Or4z4olfactory receptor family 4 subfamily Z member 41209030298209031233Rat
1333601Or4d6olfactory receptor family 4 subfamily D member 61209039073209040017Rat
1333796Or5a1olfactory receptor family 5 subfamily A member 11209050800209051753Rat
1333219Or5bb12olfactory receptor family 5 subfamily BB member 121209120577209121542Rat
1333108Olr328-psolfactory receptor pseudogene 3281209154636209155557Rat
1333987Or5an9olfactory receptor family 5 subfamily AN member 91209194949209195890Rat
1334070Or5an1olfactory receptor family 5 subfamily AN member 11209241571209242510Rat
1333238Or5an10olfactory receptor family 5 subfamily AN member 101209283277209284224Rat
1333407Olr387olfactory receptor 3871209298498209299436Rat
1333575Or5a21olfactory receptor family 5 subfamily A member 211209317575209318534Rat
1332879Or5q2-ps1olfactory receptor family 5 subfamily Q member 2, pseudogene 11209324679209325193Rat
40935990Rpl7a-ps9ribosomal protein L7a, pseudogene 91209328689209332025Rat
1334079Or5an1bolfactory receptor family 5 subfamily AN member 1B1209333761209334702Rat
1333889Or5an12-ps1olfactory receptor family 5 subfamily AN member 12, pseudogene 11209348536209349416Rat
1333328Or5an6olfactory receptor family 5 subfamily AN member 61209365511209366473Rat
1333015Or5a3olfactory receptor family 5 subfamily A member 31209406804209407760Rat
1564458Pfplpore forming protein-like1209412059209415339Rat
69275Mpeg1macrophage expressed 11209452176209456692Rat
1311767Dtx4deltex E3 ubiquitin ligase 41209457719209545163Rat
6499051Fam111a-ps1FAM111 trypsin like peptidase A, pseudogene 11209519449209552314Rat
1588627Fam111al1FAM111 trypsin like peptidase A like 11209593530209598151Rat
1560913Fam111aFAM111 trypsin like peptidase A1209640865209656551Rat
1564894Glyatl1glycine-N-acyltransferase-like 11209667315209692697Rat
1307163Glyatglycine-N-acyltransferase1209704213209724949Rat
1591254Or5b95l1olfactory receptor family 5 subfamily B member 95 like 11209744240209745232Rat
1334154Or5b95olfactory receptor family 5 subfamily B member 951209751453209752391Rat
621231Glyatl2glycine-N-acyltransferase-like 21209807488209840480Rat
2370Cntfciliary neurotrophic factor1209887854209889877Rat
628736Zfp91zinc finger protein 911209891344209928890Rat
1304981Lpxnleupaxin1209928297209963085Rat
41389006LOC120100482small nucleolar RNA U131210006728210006831Rat
1334091Or5b21olfactory receptor family 5 subfamily B member 211210009165210010127Rat
1333323Or5b96olfactory receptor family 5 subfamily B member 961210042474210052254Rat
1334063Or5b12bolfactory receptor family 5 subfamily B member 12B1210042752210043696Rat
1332989Or5b97-ps1olfactory receptor family 5 subfamily B member 97, pseudogene 11210070271210071391Rat
1334374Or5b12olfactory receptor family 5 subfamily B member 121210090773210091717Rat
1333125Or5b24olfactory receptor family 5 subfamily B member 241210111646210112581Rat
9464512Or5b2l-ps1olfactory receptor family 5 subfamily B member 2 like, pseudogene 11210122122210123095Rat
1333625Or5b99olfactory receptor family 5 subfamily B member 991210136841210137767Rat
1333760Or5b100olfactory receptor family 5 subfamily B member 1001210164505210165428Rat
1333475Or5b102olfactory receptor family 5 subfamily B member 1021210176716210177639Rat
1334406Or5b104olfactory receptor family 5 subfamily B member 1041210213962210214885Rat
1562884Cct7-ps1chaperonin containing Tcp1, subunit 7 (eta), pseudogene 11210224863210226732Rat
1332605Or5b126-ps1olfactory receptor family 5 subfamily B member 126, pseudogene 11210248193210249124Rat
1334131Or5b107b-ps1olfactory receptor family 5 subfamily B member 107B, pseudogene 11210278218210279182Rat
1332654Or5b105olfactory receptor family 5 subfamily B member 1051210298067210298990Rat
1333991Or5aa4-ps1olfactory receptor family 5 subfamily AA member 4, pseudogene 11210309417210309701Rat
1333250Or5b116bolfactory receptor family 5 subfamily B member 116B1210317860210318813Rat
1333071Or5b128-ps1olfactory receptor family 5 subfamily B member 128, pseudogene 11210322676210323557Rat
1332853Olr356-psolfactory receptor pseudogene 3561210329478210329672Rat
1333477Or5b123bolfactory receptor family 5 subfamily B member 123B1210343656210344603Rat
1333912Or5b104bolfactory receptor family 5 subfamily B member 104B1210366111210367043Rat
1333674Or5b127-ps1olfactory receptor family 5 subfamily B member 127, pseudogene 11210380597210381554Rat
1333366Or5b106olfactory receptor family 5 subfamily B member 1061210399256210402896Rat
1559854Rps8-ps11ribosomal protein S8, pseudogene 111210404228210404878Rat
1586288Tob2-ps1transducer of ERBB2, 2, pseudogene 11210421136210422282Rat
1333423Or5b107olfactory receptor family 5 subfamily B member 1071210445192210446124Rat
41017257Or5b3l-ps1olfactory receptor family 5 subfamily B member 3 like, pseudogene 11210454159210455356Rat
1332962Or5ay1-ps1olfactory receptor family 5 subfamily AY member 1, pseudogene 11210477436210478309Rat
9121299Or5b109olfactory receptor family 5 subfamily B member 1091210492296210493228Rat
1590081Or5b113olfactory receptor family 5 subfamily B member 1131210502224210503150Rat
1590077Or5b114olfactory receptor family 5 subfamily B member 1141210518245210519177Rat
1334416Or5b3olfactory receptor family 5 subfamily B member 31210550409210551347Rat
1590072Or5b17olfactory receptor family 5 subfamily B member 171210578656210579600Rat
1332812Or5b116olfactory receptor family 5 subfamily B member 1161210587347210588291Rat
41006009LOC120100118U4 spliceosomal RNA1210601525210601653Rat
1333508Or5b124b-ps1olfactory receptor family 5 subfamily B member 124B, pseudogene 11210633398210634338Rat
1333483Or5b123olfactory receptor family 5 subfamily B member 1231210658504210659439Rat
1333876Or5ax1-ps1olfactory receptor family 5 subfamily AX member 1, pseudogene 11210672669210673166Rat
1334125Or5b124c-ps1olfactory receptor family 5 subfamily B member 124C, pseudogene 11210696749210697691Rat
1333313Or5b130-ps1olfactory receptor family 5 subfamily B member 130, pseudogene 11210714536210715388Rat
1333922Or5b124olfactory receptor family 5 subfamily B member 1241210731957210732898Rat
1333289Or10w1olfactory receptor family 10 subfamily W member 11210806724210807674Rat
1334396Or10w3olfactory receptor family 10 subfamily W member 31210838552210839502Rat
1333050Or10q1olfactory receptor family 10 subfamily Q member 11210861364210862320Rat
1586243Fabp5-ps2fatty acid binding protein 5, pseudogene 21210862509210862900Rat
1333045Or10q12olfactory receptor family 10 subfamily Q member 121210889382210890341Rat
1333888Or1s2olfactory receptor family 1 subfamily S member 21210913992210914939Rat
2323522Cops8-ps5COP9 signalosome subunit 8, pseudogene 41210931289210931815Rat
1333595Or9q2olfactory receptor family 9 subfamily Q member 21210933992210934936Rat
1333303Or9i13olfactory receptor family 9 subfamily I member 131210949465210950427Rat
1334108Or9q1olfactory receptor family 9 subfamily Q member 11210959770210960705Rat
1333030Or9i16olfactory receptor family 9 subfamily I member 161210971204210972151Rat
1333317Or9i1-ps1olfactory receptor family 9 subfamily I member 1, pseudogene 11210988702210989649Rat
1333288Or9i14olfactory receptor family 9 subfamily I member 141211014005211014949Rat
1333181Or9i2olfactory receptor family 9 subfamily I member 21211050659211051606Rat
1333930Or9i1bolfactory receptor family 9 subfamily I member 1B1211096191211097141Rat
1626012Vom2r-ps69vomeronasal 2 receptor, pseudogene 691211119953211120294Rat
11423435LOC10834887060S ribosomal protein L21-like1211344371211344922Rat
1561986Pphln1-ps1periphilin 1, pseudogene 11211632345211633906Rat
3868Tle4TLE family member 4, transcriptional corepressor1211661738211798458Rat
41263002Rnu12-2lRNA, U12 small nuclear 2 like1212291792212291941Rat
40962449LOC120100345U2 spliceosomal RNA1212838445212838579Rat
735170Psat1phosphoserine aminotransferase 11213196709213218564Rat
620464Cep78centrosomal protein 781213246183213275275Rat
7736515LOC102553402uncharacterized LOC1025534021213301564213315826Rat
620770GnaqG protein subunit alpha q1213425631213671947Rat
1597112Pwp1-ps2PWP1 homolog, endonuclein, pseudogene 21213696135213698139Rat
1308122Gna14G protein subunit alpha 141213714993213900083Rat
41094357Eif2s2-ps1eukaryotic translation initiation factor 2 subunit beta, pseudogene 11213757453213758607Rat
1311340Vps13avacuolar protein sorting 13 homolog A1213901999214128638Rat
1585019Foxb2forkhead box B21214232731214234226Rat
1311350Prune2prune homolog 2 with BCH domain1214352586214624848Rat
621370Gcnt1glucosaminyl (N-acetyl) transferase 11214718344214755735Rat
41396975LOC120099997acyl-protein thioesterase 1-like1214772482214777313Rat
1549748Rfkriboflavin kinase1214799880214807440Rat
620326Pcsk5proprotein convertase subtilisin/kexin type 51214837847215267626Rat
41207476LOC120100483small nucleolar RNA U131215255621215255715Rat
41092905Rnu6-1267RNA, U6 small nuclear 12671215294117215294226Rat
41085563LOC120100429small nucleolar RNA SNORA171215798358215798482Rat
1597038Rnps1-ps3RNA binding protein with serine rich domain 1, pseudogene 31215867429215868901Rat
628849Ostf1osteoclast stimulating factor 11216002037216049226Rat
1564687Nmrk1nicotinamide riboside kinase 11216049350216076792Rat
40930941Rps15-ps7ribosomal protein S15, pseudogene 71216059427216061856Rat
1311863Carnmt1carnosine N-methyltransferase 11216093720216123360Rat
1563237C1h9orf40similar to human chromosome 9 open reading frame 401216128687216132896Rat
1309942Trpm6transient receptor potential cation channel, subfamily M, member 61216136407216320523Rat
7668904LOC102554711uncharacterized LOC1025547111216159777216162543Rat
1306778RorbRAR-related orphan receptor B1216363629216544390Rat
7658951LOC102554959uncharacterized LOC1025549591216520876216525016Rat
11474079Gapdhl2glyceraldehyde-3-phosphate dehydrogenase like 21216612021216613034Rat
41303320LOC120098081uncharacterized LOC1200980811216690552216691985Rat
41166240LOC120100427small nucleolar RNA SNORA171216711164216711298Rat
1586523Ahcy-ps4adenosylhomocysteinase, pseudogene 41217020367217021658Rat
6494111Aldoa-ps2aldolase, fructose-bisphosphate A, pseudogene 21217423560217425007Rat
2323439Npm1l1nucleophosmin 1 like 11217543373217544186Rat
1563931Btf3l7basic transcription factor 3 like 71217554312217557717Rat
2118Anxa1annexin A11217861175217877205Rat
2087Aldh1a1aldehyde dehydrogenase 1 family, member A11218000470218152962Rat
402093005Aldh1a7aldehyde dehydrogenase family 1, subfamily A71218201443218241410Rat
1308682Tmc1transmembrane channel-like 11218275249218446013Rat
7657219LOC102551351uncharacterized LOC1025513511218637961218681826Rat
11492063LOC108348874glyceraldehyde-3-phosphate dehydrogenase pseudogene1218714987218715999Rat
1310776Zfand5zinc finger AN1-type containing 51218765735218780391Rat
7618157LOC102551544uncharacterized LOC1025515441218792565218797618Rat
9142228LOC103691306uncharacterized LOC1036913061218797024218823843Rat
41061241LOC120100000uncharacterized LOC1201000001218891154218910823Rat
621617Gdaguanine deaminase1218903045218982360Rat
41111402LOC120100370small nucleolar RNA SNORA441218910326218910454Rat
6490675C1h9orf57similar to human chromosome 9 open reading frame 571219079683219084806Rat
41157562LOC120100414small nucleolar RNA SNORA171219114576219114705Rat
1359158C1h9orf85similar to human chromosome 9 open reading frame 851219136085219197723Rat
1305246Abhd17babhydrolase domain containing 17B, depalmitoylase1219198294219232733Rat
11381164LOC108348948uncharacterized LOC1083489481219237610219250592Rat
1307941Cemip2cell migration inducing hyaluronidase 21219330295219407760Rat
41370285Eif4a1-ps7eukaryotic translation initiation factor 4A1, pseudogene 71219386631219389372Rat
1304888Trpm3transient receptor potential cation channel, subfamily M, member 31219673200220557610Rat
41047541LOC120100459small nucleolar RNA SNORA171219771021219771145Rat
41332067LOC120100428small nucleolar RNA SNORA171219869292219869423Rat
6489406Timm23-ps3translocase of inner mitochondrial membrane 23, pseudogene 31219969156219980173Rat
11518304LOC108349823uncharacterized LOC1083498231220224951220261496Rat
7503291LOC102552001uncharacterized LOC1025520011220284052220295326Rat
2325551Mir204microRNA 2041220316931220317040Rat
41225190LOC12010000340S ribosomal protein S12-like1220574554220577707Rat
11445681LOC108349100uncharacterized LOC1083491001220591633220623488Rat
70934Klf9KLF transcription factor 91220700108220725110Rat
1307492Smc5structural maintenance of chromosomes 51220769366220839138Rat
41391465Rnu6-806RNA, U6 small nuclear 8061220856369220856475Rat
1305129Mamdc2MAM domain containing 21220863959221016493Rat
41287817LOC120100498U4 spliceosomal RNA1221085628221085775Rat
1560242Cfap95cilia and flagella associated protein 951221123786221242963Rat
41102373LOC120100401small nucleolar RNA SNORA481221141990221142132Rat
41219068LOC120100460small nucleolar RNA SNORA171221233213221233314Rat
40945859LOC120098082uncharacterized LOC1200980821221255188221260427Rat
708369Ptar1protein prenyltransferase alpha subunit repeat containing 11221283306221326861Rat
40955348Rnu6-65RNA, U6 small nuclear 651221343294221343397Rat
620844Apba1amyloid beta precursor protein binding family A member 11221363769221569496Rat
1307524Entrep1endosomal transmembrane epsin interactor 11221592500221646603Rat
41211547LOC120100127U6 spliceosomal RNA1221643603221643709Rat
41205153LOC120100004uncharacterized LOC1201000041221677917221703867Rat
619807Tjp2tight junction protein 21221709745221838291Rat
1565754Fxnfrataxin1221874007221897543Rat
1310914Pip5k1bphosphatidylinositol-4-phosphate 5-kinase type 1 beta1221907220222183672Rat
41200944LOC120100005uncharacterized LOC1201000051221956410221958663Rat
1310316Pabir1PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 11222114988222116294Rat
41304355Dynlt1-ps1dynein light chain Tctex-type 1, pseudogene11222125549222133864Rat
1359349Tmem252transmembrane protein 2521222316982222321946Rat
1307969Pgm5phosphoglucomutase 51222325638222513434Rat
621716Foxd4forkhead box D41222557494222559189Rat
708495Zng1aZn regulated GTPase metalloprotein activator 1A1222568278222612937Rat
7729455LOC102556915uncharacterized LOC1025569151222610724222638904Rat
1561588Dock8dedicator of cytokinesis 81222649309222842474Rat
41171153LOC120100363small nucleolar RNA SNORA241222808283222808414Rat
1307714Kank1KN motif and ankyrin repeat domains 11222877962223074514Rat
7600426LOC102554752uncharacterized LOC1025547521222973015222980840Rat
2323621Ran-ps1RAN, member RAS oncogene family, pseudogene 11223132286223132860Rat
621640Dmrt1doublesex and mab-3 related transcription factor 11223142859223241333Rat
1306043Dmrt3doublesex and mab-3 related transcription factor 31223244340223264254Rat
1309047Dmrt2doublesex and mab-3 related transcription factor 21223317543223324131Rat
41395459Trnap-agg60transfer RNA proline (anticodon AGG) 601223386056223386136Rat
11400155LOC108349212uncharacterized LOC1083492121223558078223568748Rat
41278963LOC120100006uncharacterized LOC1201000061223632579223634200Rat
9327776LOC103691315uncharacterized LOC1036913151223712697223723908Rat
7594231LOC102555110uncharacterized LOC1025551101223909032223923555Rat
9160927LOC103695057uncharacterized LOC1036950571223944725223966152Rat
1562774Psmb6-ps1proteasome 20S subunit beta 6, pseudogene 11224033071224034353Rat
9453920LOC103691317uncharacterized LOC1036913171224095049224105835Rat
1302988Smarca2SWI/SNF related BAF chromatin remodeling complex subunit ATPase 21224191125224358640Rat
11409422LOC108348917uncharacterized LOC1083489171224434444224436629Rat
41216261LOC120098083uncharacterized LOC1200980831224544345224550155Rat
41400972LOC120100007uncharacterized LOC1201000071224550777224558046Rat
6495932Rps17-ps1ribosomal protein S17, pseudogene 11224590238224590650Rat
7599954LOC102557104uncharacterized LOC1025571041224657115224660713Rat
41004520LOC120100010uncharacterized LOC1201000101224677005224690946Rat
3963Vldlrvery low density lipoprotein receptor1224813539224850400Rat
1309271Kcnv2potassium voltage-gated channel modifier subfamily V member 21224999552225014062Rat
1564753Pum3pumilio RNA-binding family member 31225074332225113995Rat
7700759LOC102555808uncharacterized LOC1025558081225114347225140414Rat
7566943LOC102555989uncharacterized LOC1025559891225289547225334401Rat
2325049Eif4e-ps2eukaryotic translation initiation factor 4E, pseudogene 21225371014225371531Rat
1307779Rfx3regulatory factor X31225449872225709622Rat
41377637LOC120100479U6atac minor spliceosomal RNA1225488774225488891Rat
41097335LOC120100391small nucleolar RNA SNORA511225495834225495966Rat
7517961Thoc3-ps1THO complex 3, pseudogene 11225665659225666454Rat
1589453Ppid-ps2peptidylprolyl isomerase D, pseudogene 21225740072225741290Rat
41401218Rnu6-613RNA, U6 small nuclear 6131225971183225971289Rat
1565505Glis3GLIS family zinc finger 31225976029226395849Rat
41142846LOC120098084uncharacterized LOC1200980841226451090226457544Rat
7715694LOC102546345uncharacterized LOC1025463451226521231226549807Rat
41277114Rnu6-525RNA, U6 small nuclear 5251226541765226541871Rat
3696Slc1a1solute carrier family 1 member 11226549932226631925Rat
1310039Spata6lspermatogenesis associated 6-like1226630470226682979Rat
1566000Plpp6phospholipid phosphatase 61226679100226681952Rat
1588239Phyh-ps1phytanoyl-CoA 2-hydroxylase, pseudogene 11226688444226689337Rat
1565057Tekt5l1tektin 5 like 11226689519226705125Rat
1309295Cdc37l1cell division cycle 37-like 11226705019226733994Rat
619885Ak3adenylate kinase 31226737472226764647Rat
41171347LOC120100015uncharacterized LOC1201000151226782511226787383Rat
1305320Rcl1RNA terminal phosphate cyclase-like 11226824561226869046Rat
2325609Mir101-2microRNA 101-21226860371226860467Rat
2939Jak2Janus kinase 21226995334227054381Rat
62061Insl6insulin-like 61227069958227073493Rat
7710008Phb1-ps9prohibitin 1, pseudogene 91227073574227075424Rat
3579Rln1relaxin 11227079960227082960Rat
1306839Plgrktplasminogen receptor with a C-terminal lysine1227099005227111277Rat
1566211Cd274CD274 molecule1227116674227137379Rat
1585881Nip7-ps2nucleolar pre-rRNA processing protein NIP7, pseudogene 21227152984227153506Rat
1306403Pdcd1lg2programmed cell death 1 ligand 21227158941227223938Rat
1310016Ric1RIC1 homolog, RAB6A GEF complex partner 11227285510227384553Rat
727831Ermp1endoplasmic reticulum metallopeptidase 11227383992227422120Rat
41025615LOC120100017uncharacterized LOC1201000171227432377227441119Rat
41273033LOC120100018uncharacterized LOC1201000181227451357227453734Rat
1306525Mlanamelan-A1227469537227483343Rat
1311595Brd10bromodomain containing 101227490983227572246Rat
11481274LOC10834943360S ribosomal protein L7a pseudogene1227542130227543021Rat
1305165Ranbp6RAN binding protein 61227572394227576915Rat
1597109Trmt6-ps1tRNA methyltransferase 6, pseudogene 11227636838227639063Rat
1311155Il33interleukin 331227701964227736374Rat
1309391Tpd52l3TPD52 like 31227781173227785040Rat
40999271LOC120100019uncharacterized LOC1201000191227782742227792669Rat
1584666Eef1b2-ps3eukaryotic translation elongation factor 1 beta 2, pseudogene 31227799668227800398Rat
1309990Uhrf2ubiquitin like with PHD and ring finger domains 21227814639227877907Rat
1308660Gldcglycine decarboxylase1227883249227962119Rat
2319280Chchd4-ps1coiled-coil-helix-coiled-coil-helix domain containing 4, pseudogene 11227987584227988841Rat
2322594Cycs-ps1cytochrome c, somatic, pseudogene 11227995655227996114Rat
67380Mbl2mannose binding lectin 21228016439228024736Rat
40955270Rpl7a-ps25ribosomal protein L7a, pseudogene 251228084261228086232Rat
1307313Dkk1dickkopf WNT signaling pathway inhibitor 11228381521228385202Rat
1587390Prkg1protein kinase cGMP-dependent 11228409605229638794Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33945D1Mit181211218753689218753816Ratregion
34009D1Mit341241225126575225126682Ratregion
36021D1Rat1151601209979959209980119Ratregion
36219D1Rat3841651223390805223390953Ratregion
35525D1Rat1161661212458494212458660Ratregion
35525D1Rat1161661212458494212458660Ratregion
35551D1Rat1171331213533809213533942Ratregion
36866D1Rat731801218748008218748178Ratregion
36960D1Rat761441224569538224569684Ratregion
37162D1Rat721631219008538219008695Ratregion
37754D1Rat1231991218108584218108781Ratregion
37902D1Rat1691391224054293224054420Ratregion
37982D1Rat2232081222987545222987745Ratregion
36757D1Rat711461210702053210702199Ratregion
35909D1Rat741811221264111221264292Ratregion
40422D1Rat3713001228617884228618176Ratregion
40028D1Rat3011741228581588228581766Ratregion
39560D1Rat3242021223506828223507030Ratregion
42280D1Rat4721191208962849208962968Ratregion
41168D1Rat2992271218972999218973225Ratregion
41390D1Rat2941721209053407209053579Ratregion
41390D1Rat2941721209053407209053800Ratregion
41392D1Rat3021591226660307226660468Ratregion
42526D1Rat3683431214249336214249670Ratregion
42527D1Rat3692441220461115220461370Ratregion
42528D1Rat4432051221012144221012343Ratregion
42529D1Rat4442841221701015221701306Ratregion
42530D1Rat4452251225436894225437098Ratregion
41036D1Rat2982071219932573219932796Ratregion
41048D1Rat2962461217206835217207077Ratregion
41610D1Rat3002781227604230227604520Ratregion
41806D1Rat3702311220165574220165798Ratregion
41882D1Rat4744321224262121224262540Ratregion
43407D1Got2092501209704654209704904Ratregion
43413D1Got2132811214224580214224861Ratregion
43414D1Got2111151213247991213248106Ratregion
43416D1Got2072131214072102214072315Ratregion
43417D1Got2182601214072046214072306Ratregion
43418D1Got2142151214328012214328227Ratregion
43422D1Got2251961227357370227357566Ratregion
43423D1Got2281191225824951225825067Ratregion
43424D1Wox10901214537555214537671Ratregion
43425D1Got2461731227677207227677380Ratregion
43426D1Got2311101225713778225713888Ratregion
43428D1Got2452011228602908228603109Ratregion
43461D1Got2231481222435979222436124Ratregion
43605D1Got2221841220720366220720548Ratregion
60217D1Got2162481215510738215510986Ratregion
60219D1Got2192771218623671218623948Ratregion
60220D1Got2202291222265205222265431Ratregion
60221D1Got2212091221362223221362434Ratregion
60222D1Got2241551227075434227075585Ratregion
60223D1Got2262071221665594221665801Ratregion
60225D1Got2301601227112235227112395Ratregion
60214D1Got2051541208650087208650245Ratregion
60215D1Got2081681213175280213175450Ratregion
62481D1Uia53641213707201213707555Ratregion
62489D1Uia72271217136594217136817Ratregion
66618D1Mco412901221919753221920075Ratregion
67776D1Uwm82431214737483214737720Ratregion
1631778D1Wox611671208605211208605378Ratregion
1628034D1Wox621211208608812208608933Ratregion
1629229D1Got341881219353990219354078Ratregion
1638953D1Got4372591222265486222265745Ratregion
1639509D1Wox861601219008044219008204Ratregion
1639989D1Cebr61421227193527227193669Ratregion
1640039D1M19Mit128571214644917214644974Ratregion
1640354D1Got343941227099775227099869Ratregion
1635618D1Got3773351224551772224552102Ratregion
1635712D1Got342901218038402218038492Ratregion
1638265D1Got3951701214372984214373154Ratregion
7205874FLRT213811214406516214407897Ratregion
8693309rs1074525971207987464207987464Ratregion
8693311rs642098611228627600228627600Ratregion
5036316Gif1221208605928208606050Ratregion
5039140RH1275351871219138335219138522Ratregion
5036917AU0496181401227809787227809927Ratregion
5037073WI-203732221220726511220726733Ratregion
5026008RH1305552081226765532226765740Ratregion
5031460AU0482502391220833136220833377Ratregion
5028787RH1423261591208918112208918271Ratregion
5029059RH1433611251226733443226733568Ratregion
5026524RH1325442201219195276219195496Ratregion
5034600BF3900101411226745021226745162Ratregion
5029275RH1441791341220708998220709132Ratregion
5032163RH1259842301214569925214570155Ratregion
5034802AA8934531061228023892228023998Ratregion
5029482D1Bda562181214838009214838227Ratregion
5029721BE0966852081225013066225013274Ratregion
5029727BE1021131621225495877225496039Ratregion
5032439AA792082811211663239211663320Ratregion
5032483D19Ertd744e2201220551196220551416Ratregion
5035404BE1073811501213246253213246403Ratregion
5027157WI-187461491224845372224845521Ratregion
5034848AI0134101101209415107209415217Ratregion
5029935BF3880171521226732718226732870Ratregion
5032699RH1349701881208237532208237720Ratregion
5032781RH1352771941225397248225397441Ratregion
5027541AW5590881091208918250208918359Ratregion
5025242RH1275641881227483876227484064Ratregion
5025266RH1276562061217861231217861437Ratregion
502784309.MMHAP31FLC3.seq1511224842817224842968Ratregion
5028057Results_ER_8_28_95_2_42.seq1881226018279226018467Ratregion
5030603BE1136451791219171782219171961Ratregion
5030725BE1077751521218779785218779937Ratregion
5030741BE1078591951227535916227536111Ratregion
5030847BE1206671791219346780219346959Ratregion
5025666RH1291951951226737498226737693Ratregion
5025768RH1295871571227387958227388115Ratregion
5028316D9S19862761218775283218775559Ratregion
5051675RH945931871217861226217861413Ratregion
5057201D1Bda552251208441816208442041Ratregion
5057203D1Bda572081218152592218152800Ratregion
5057376AA851370991221914558221914657Ratregion
5054563RH1432961091219384105219384214Ratregion
5057788BE1015431751216468641216468816Ratregion
5054757RH1434071341209641070209641204Ratregion
5058686BF3935221391221506666221506805Ratregion
5055969RH1441071711220556140220556311Ratregion
5058730BE1023961571216477175216477332Ratregion
5059656BF3941131811215994901215995082Ratregion
5052223D178781861209590397209590583Ratregion
5057205D1Bda582541217861237217861491Ratregion
5057209D1Bda602001227080097227080297Ratregion
5057211D1Bda612341227053939227054173Ratregion
5055207RH1436681601217876465217876625Ratregion
5059774BE0978361811227637259227637440Ratregion
5050068RH1338442171226868658226868875Ratregion
5059112BE1028511921220488174220488366Ratregion
5059200BF3876381711227785652227785823Ratregion
5050322RH1339892081213668591213668799Ratregion
5053857RH1428911061227572429227572535Ratregion
5053959RH1429491411227837535227837676Ratregion
5053279RH1425561501227412517227412667Ratregion
5053329RH1425851221209651470209651592Ratregion
5053349RH1425972351220772000220773196Ratregion
5051743RH946331791218152697218152876Ratregion
5044000RH1303532021227385201227385403Ratregion
5040780RH1284792061213196795213197001Ratregion
5040808RH1284951811227490216227490397Ratregion
5044442RH1306052201209457866209458086Ratregion
5043616RH1301271811208807338208807519Ratregion
5045134RH1310032201218900833218901053Ratregion
5045494RH1312101881226733691226733879Ratregion
5045636RH1312911961216132603216132799Ratregion
5044202RH1304681831222253136222253319Ratregion
5048706RH1330581861222928444222928630Ratregion
5044302RH1305251841226631740226631924Ratregion
5046470RH1317711701220560535220560705Ratregion
5047630RH1324382031227491044227491247Ratregion
5047690RH1324721931222638513222638706Ratregion
5047780RH1325241971221774547221774744Ratregion
5046608RH1318511911216356958216357149Ratregion
5045908RH1314482001228024334228024534Ratregion
5047968RH1326332021227384319227384521Ratregion
5046786RH1319541861218043367218043553Ratregion
5048052RH1326802191218765210218765429Ratregion
5048094RH1327052151228051798228052013Ratregion
5047072RH1321181971224849997224850194Ratregion
5048252RH1327961881221709826221710014Ratregion
8663443rs1055602111217578458217578458Ratregion
8663445rs640429031221112979221112979Ratregion
5039340RH1276501801209891668209891848Ratregion
5042038RH1292031951208402728208402923Ratregion
5042258RH1293311891227054969227055158Ratregion
5048476RH1329252091227981845227982054Ratregion
5039806RH1279171891213923813213924002Ratregion
5048518RH1329492181218902533218902751Ratregion
5039994RH1280271801214807123214807303Ratregion
5042762RH1296311851217861215217861400Ratregion
5042808RH1296581801218903235218903415Ratregion
5039448RH1277111841227736156227736340Ratregion
5041928RH1291401501214806001214806151Ratregion
5040574RH1283611921209656301209656493Ratregion
5042988RH1297632061227483132227483338Ratregion
5043306RH1299501891227099140227099329Ratregion
5042700RH1295931861208402747208402933Ratregion
5040980RH1285941811209887969209888150Ratregion
5041086RH1286541931226681606226681799Ratregion
5043816RH1302442081214569913214570121Ratregion
5040508RH1283241891213902062213902251Ratregion
5041550RH1289211821221592548221592730Ratregion
5075418RH1385821401225013448225013588Ratregion
5075634RH1387071651227638457227638622Ratregion
5072408RH1368322481209962825209963073Ratregion
5076028RH1389371721214623605214623780Ratregion
5076122RH1389922041208641923208642127Ratregion
5076296RH1390932121222558809222559021Ratregion
5076908RH1394481241219136217219136341Ratregion
5074746RH1381941741209916600209916774Ratregion
5080562RH1416512061221334766221334972Ratregion
5075576RH1386731201216123153216123273Ratregion
5077546RH1398181941218777868218778062Ratregion
5077726RH1399221991208639273208639472Ratregion
5077162RH1395981891223365706223365895Ratregion
5077248RH1396472171208639856208640073Ratregion
5077256RH1396521991222321588222321787Ratregion
5077484RH1397832061208641269208641475Ratregion
5077574RH1398342191209891987209892206Ratregion
5079870RH1412512081223075751223075959Ratregion
5078100RH1401431971226739381226739578Ratregion
5078900RH1406172201216745395216745615Ratregion
5080158RH1414182001227054207227054407Ratregion
5080202RH1414441941227223455227223650Ratregion
5078460RH1403561661219406796219406962Ratregion
5073390RH1374082051225013851225014056Ratregion
5080460RH1415911991227398099227398298Ratregion
5073732RH1376061371227503687227503824Ratregion
5074152RH1378511971221336475221336672Ratregion
5071178RH1349321951209691437209691632Ratregion
5073162RH1372751871218152663218152850Ratregion
5071822RH1353042051219811320219811525Ratregion
5071982RH1353971881208638679208638867Ratregion
5071350RH1350311811220337603220337784Ratregion
5073584RH1375201521215113055215113207Ratregion
5071614RH1351842141227867943227868157Ratregion
5061792AW5335381531227720881227721034Ratregion
5065090BF4057861851220121237220121422Ratregion
5066984AU0480341491214763679214763828Ratregion
5067658AU0476131361226142736226142872Ratregion
5068284AU0472391381215637854215637992Ratregion
5069987RH944041621208440398208440560Ratregion
5069414AU0465161231208239275208239351Ratregion
5070143RH944971311227080020227080152Ratregion
5070193RH945261081224845310224845416Ratregion
5069654AU0463581021213195368213195470Ratregion
5070289RH945811941209887928209888115Ratregion
5070328D11440801228022336228022416Ratregion
5070534AU0153942321220849691220849923Ratregion
5069266AU0466112991214826081214826374Ratregion
5069268AU0466082481227712117227712193Ratregion
5063554BE1077882041220127904220128108Ratregion
5065410AI5023141831212716798212716981Ratregion
5064056BE1205731531226629825226629978Ratregion
5060720BE1109581651227734650227734815Ratregion
5066004BE1164861721227808352227808524Ratregion
5066010BF4130851551227814162227814317Ratregion
5060314AW5313571741218778492218778666Ratregion
5065260BE1213051741208663072208663246Ratregion
5064096BE1140471801209480151209480331Ratregion
5065736BE1097541661226737930226738096Ratregion
5062964BE1135071931221322093221322286Ratregion
5064484BE1080611831220051657220051840Ratregion
5061342BF3962621391209886520209886659Ratregion
5063280BI3016341581216733943216734101Ratregion
5064842BF3998451741226551852226552026Ratregion
5066454AU0483472311218826839218827070Ratregion
5061622BF4022961181222118725222118843Ratregion
5084314AI1693111271222321660222321787Ratregion
5084358AI1694401481213667747213667895Ratregion
5087142BM3878791611213439805213439966Ratregion
5087317BQ1953062021221874346221874548Ratregion
5082791BF3901181501222116991222117141Ratregion
5083363AA8185742201208917963208918373Ratregion
5090675AU0498942621221130116221130378Ratregion
5084034AA9434361211224232526224232647Ratregion
5084208AA893933921222782207222782299Ratregion
5084658AA8514702201216110553216110773Ratregion
5081985BE1189801641227894395227894559Ratregion
5082043BF4157731311220144561220144692Ratregion
5084924AI2367391991226747183226747382Ratregion
5088363AU0485241281213332560213332688Ratregion
5088609AU0486712671224206540224206807Ratregion
5080990RH1419001921222659472222659664Ratregion
5082637BF4164871471220472338220472485Ratregion
5085798AI2331031621209724711209724873Ratregion
5084580AA9463752451220769832220770077Ratregion
5082939BF3904511681215029096215029264Ratregion
5086333AA9564241911227386019227386210Ratregion
5081330RH1420982101213897187213897402Ratregion
5083243BI2757651711227877511227877682Ratregion
5081376AI0716341961222842145222842341Ratregion
5081485AA9986361321209460769209460901Ratregion
5081679BE1179921671228387043228387210Ratregion
5085282BM3900652161221982561221982777Ratregion
5083713AI0096691331208411929208413230Ratregion
5086699AI763559901208638743208638833Ratregion
5086725AI0308032191209457751209457970Ratregion
5081757BE1180642201211706941211707161Ratregion
5081769BE1181401501225080480225080630Ratregion
5503107CCT71061210225853210225959Ratregion
5503308UniSTS:2379191701227572418227572588Ratregion
5504205BARC00732191225740516225740721Ratregion
5504861ha261101214359285214360924Ratregion
5505309Mlf26061221563065221563671Ratregion
5505420Tle49851211662206211663191Ratregion
5505075Dmrt11501223183780223183930Ratregion
5505696UniSTS:4893979481211050658211051606Ratregion
5505798UniSTS:49433510671208967458208968525Ratregion
5505957UniSTS:4966753221213666842213667164Ratregion
5505600UniSTS:4851469301210051330210052260Ratregion
5506127UniSTS:498426621228383046228383108Ratregion
5506911G478682881223295344223295632Ratregion
5507003fi76b03.x18451227470073227470919Ratregion
5500226AU0217211171218773608218774292Ratregion
5499997UniSTS:2360199281228001590228002518Ratregion
5500865AF03674901208468706208469973Ratregion
5501618REN107D226321221069301221069933Ratregion
5502070MARC_26819-26820:1034280769:31101218770762218771451Ratregion
5506185UniSTS:4987469881228383396228384384Ratregion
5501894MARC_16905-16906:1020714896:34581222593734222594192Ratregion
5502315RH1244651161209901504209901975Ratregion
5502985D19Dcr4471214924277214924324Ratregion
5502853Cntf01209888096209889737Ratregion
5502319RH1244631391218773564218774270Ratregion
Position Markers

Flank 1: (rs107452597)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21207,987,464 - 207,987,464RGD
Rnor_6.01227,509,470 - 227,509,470RGD
Celera1205,462,252 - 205,462,252RGD
Peak: (rs64042903)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21221,112,979 - 221,112,979RGD
Rnor_6.01241,320,305 - 241,320,305RGD
Celera1218,326,594 - 218,326,594RGD
Flank 2: (rs64209861)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21228,627,600 - 228,627,600RGD
Rnor_6.01249,252,048 - 249,252,048RGD
Celera1225,759,203 - 225,759,203RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
8693661Alc34Alcohol consumption QTL 342.20.611drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464228627600Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
5508828Leukc3Leukocyte quantity QTL 3eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1218108584224054420Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1206329708222745518Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1223262787260522016Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1193422268214537671Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1214537555226660468Rat
6480786Bw97Body weight QTL 975.03body mass (VT:0001259)body weight (CMO:0000012)1225126575227604520Rat
8693618Alc25Alcohol consumption QTL 2530.28drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464228627600Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general spans 234.9-256.4 Mb 8663441
qtl_general measurement method: rats were given 10% EtOH for 1 week, then for 7 weeks they were given 2-bottle choice of water and EtOH followed by 2 week period of only water (alcohol deprivation); then 2 weeks of 2-bottle choice of water and EtOH followed by second 2 weeks of alcohol deprivation then 2 weeks of 2-bottle choice of water and EtOH followed by third 2 weeks of alcohol deprivation and 1 week of 2-bottle choice of water and EtOH 8663441
qtl_general water and alcohol consumption were measured by weight 8663441
qtl_general alcohol deprivation effect (ADE) was calculated as the amount of alcohol consumed (g/kg) during 24 hrs after deprivation minus average daily amount consumed in the week before deprivation period 8663441
qtl_general this QTL correlates to week 2 pre-ADE alcohol consumption 8663441
qtl_general software used: ANOVA 8663441
qtl_general number of animals used: 70-100 days old males from HXB/BXH RI strains and the parental BN-Lx/CubPrin, SHR/OlaIpcvPrin 8663441