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Gene: LOC499331 (similar to hypothetical protein D030056L22) Rattus norvegicus
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Symbol: LOC499331
Name: similar to hypothetical protein D030056L22
Description: Orthologous to human C9orf40 (chromosome 9 open reading frame 40); INTERACTS WITH bisphenol A; all-trans-retinoic acid (ortholog); benzo[a]pyrene diol epoxide I (ortholog).
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC499331; uncharacterized protein C9orf40 homolog
Orthologs:
Homo sapiens (human) : C9orf40 (chromosome 9 open reading frame 40)  HGNC  Alliance
Mus musculus (house mouse) : D030056L22Rik (RIKEN cDNA D030056L22 gene)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : C9H9orf40 (chromosome 9 C9orf40 homolog)
Canis lupus familiaris (dog) : C1H9orf40 (chromosome 1 C9orf40 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : CUNH9orf40 (chromosome unknown C9orf40 homolog)
Sus scrofa (pig) : C1H9orf40 (chromosome 1 C9orf40 homolog)
Chlorocebus sabaeus (African green monkey) : C12H9orf40 (chromosome 12 open reading frame, human C9orf40)
Heterocephalus glaber (naked mole-rat) : CUNH9orf40 (chromosome unknown C9orf40 homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01234,665,904 - 234,670,113 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1234,665,905 - 234,670,113 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,765,682 - 241,769,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,309,341 - 222,313,550 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1213,427,725 - 213,431,934 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on LOC499331
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563237
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.