Smarca2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) - Rat Genome Database

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Gene: Smarca2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) Rattus norvegicus
Analyze
Symbol: Smarca2
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
RGD ID: 1302988
Description: Enables chromatin binding activity. Involved in spermatid development. Predicted to be located in intermediate filament cytoskeleton and nucleoplasm. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Predicted to be active in nucleus. Orthologous to human SMARCA2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: probable global transcription activator SNF2L2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,617,277 - 233,784,908 (+)NCBIGRCr8
mRatBN7.21224,191,125 - 224,358,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,191,125 - 224,358,684 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,628,052 - 232,795,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01239,558,151 - 239,725,654 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,378,904 - 232,546,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,615,811 - 244,783,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,615,821 - 244,782,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,867,320 - 252,035,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,015,057 - 230,183,451 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11230,179,079 - 230,347,474 (+)NCBI
Celera1221,383,226 - 221,550,796 (+)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
geraniol  (ISO)
glafenine  (EXP)
hydrazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
promegestone  (ISO)
rac-lactic acid  (ISO)
riddelliine  (ISO)
rimonabant  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Insights into role of bromodomain, testis-specific (Brdt) in acetylated histone H4-dependent chromatin remodeling in mammalian spermiogenesis. Dhar S, etal., J Biol Chem. 2012 Feb 24;287(9):6387-405. doi: 10.1074/jbc.M111.288167. Epub 2012 Jan 3.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4. Mammalian chromatin remodeling complex SWI/SNF is essential for enhanced expression of the albumin gene during liver development. Inayoshi Y, etal., J Biochem. 2006 Feb;139(2):177-88.
5. Chromatin remodeling and histone modification in the conversion of oligodendrocyte precursors to neural stem cells. Kondo T and Raff M, Genes Dev. 2004 Dec 1;18(23):2963-72.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Altered control of cellular proliferation in the absence of mammalian brahma (SNF2alpha). Reyes JC, etal., EMBO J 1998 Dec 1;17(23):6979-91.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. The bromodomain: From epigenome reader to druggable target. Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
13. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
Additional References at PubMed
PMID:8208605   PMID:9603422   PMID:11078522   PMID:12065415   PMID:12368262   PMID:14660596   PMID:15774904   PMID:17640523   PMID:17855369   PMID:17984088   PMID:19342595   PMID:22368283  
PMID:23785148   PMID:24137001   PMID:24335282  


Genomics

Comparative Map Data
Smarca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,617,277 - 233,784,908 (+)NCBIGRCr8
mRatBN7.21224,191,125 - 224,358,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,191,125 - 224,358,684 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1232,628,052 - 232,795,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01239,558,151 - 239,725,654 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,378,904 - 232,546,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,615,811 - 244,783,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,615,821 - 244,782,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,867,320 - 252,035,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,015,057 - 230,183,451 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11230,179,079 - 230,347,474 (+)NCBI
Celera1221,383,226 - 221,550,796 (+)NCBICelera
Cytogenetic Map1q52NCBI
SMARCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,015,347 - 2,193,620 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl91,980,290 - 2,193,624 (+)EnsemblGRCh38hg38GRCh38
GRCh3792,015,347 - 2,193,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3692,005,342 - 2,183,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 3492,005,341 - 2,183,624NCBI
Celera91,933,296 - 2,111,552 (+)NCBICelera
Cytogenetic Map9p24.3NCBI
HuRef91,969,240 - 2,147,484 (+)NCBIHuRef
CHM1_192,015,467 - 2,193,714 (+)NCBICHM1_1
T2T-CHM13v2.092,017,871 - 2,196,083 (+)NCBIT2T-CHM13v2.0
Smarca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391926,582,578 - 26,755,721 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1926,582,450 - 26,755,722 (+)EnsemblGRCm39 Ensembl
GRCm381926,605,073 - 26,778,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1926,605,050 - 26,778,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv371926,679,650 - 26,852,811 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361926,672,257 - 26,845,418 (+)NCBIMGSCv36mm8
Celera1927,388,592 - 27,561,569 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1917.0NCBI
Smarca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554346,420,854 - 6,594,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554346,420,850 - 6,592,797 (+)NCBIChiLan1.0ChiLan1.0
SMARCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211122,394,494 - 122,574,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19122,400,390 - 122,580,062 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v091,818,004 - 1,997,652 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.192,043,336 - 2,189,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,013,237 - 2,189,409 (+)Ensemblpanpan1.1panPan2
SMARCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1190,709,221 - 90,884,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl190,712,520 - 90,883,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha191,177,680 - 91,352,646 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0191,256,337 - 91,431,025 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl191,270,959 - 91,431,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1190,903,604 - 91,078,531 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0190,622,040 - 90,796,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0191,390,477 - 91,565,374 (+)NCBIUU_Cfam_GSD_1.0
Smarca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947138,171,713 - 138,337,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365032,835,496 - 3,001,381 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365032,835,512 - 3,001,365 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,573,535 - 219,815,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,624,773 - 219,815,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,489,523 - 245,677,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11277,364,468 - 77,546,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1277,375,500 - 77,546,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603865,710,587 - 65,892,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247366,695,658 - 6,865,809 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247366,681,491 - 6,863,403 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smarca2
662 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:83
Interacting mature miRNAs:88
Transcripts:ENSRNOT00000016740
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
634340Hcar5Hepatocarcinoma resistance QTL 58liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1214537555226660468Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat

Markers in Region
D1Rat474  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,262,121 - 224,262,540 (+)MAPPERmRatBN7.2
Rnor_6.01244,686,821 - 244,687,239NCBIRnor6.0
Rnor_5.01251,938,326 - 251,938,744UniSTSRnor5.0
RGSC_v3.41230,086,046 - 230,086,464UniSTSRGSC3.4
RGSC_v3.11230,250,058 - 230,250,548RGD
Celera1221,454,216 - 221,454,634UniSTS
FHH x ACI Map1111.18UniSTS
FHH x ACI Map1111.18RGD
Cytogenetic Map1q51UniSTS
AA943436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,232,526 - 224,232,647 (+)MAPPERmRatBN7.2
Rnor_6.01244,657,228 - 244,657,348NCBIRnor6.0
Rnor_5.01251,908,733 - 251,908,853UniSTSRnor5.0
RGSC_v3.41230,056,453 - 230,056,573UniSTSRGSC3.4
Celera1221,424,623 - 221,424,743UniSTS
RH 3.4 Map11618.11UniSTS
Cytogenetic Map1q51UniSTS
AU048671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,206,540 - 224,206,807 (+)MAPPERmRatBN7.2
Rnor_6.01244,631,248 - 244,631,514NCBIRnor6.0
Rnor_5.01251,882,753 - 251,883,019UniSTSRnor5.0
RGSC_v3.41230,030,473 - 230,030,739UniSTSRGSC3.4
Celera1221,398,642 - 221,398,908UniSTS
Cytogenetic Map1q51UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY643746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016740   ⟹   ENSRNOP00000016740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Rnor_6.0 Ensembl1244,630,377 - 244,782,706 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080124   ⟹   ENSRNOP00000069210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,191,125 - 224,354,593 (+)Ensembl
Rnor_6.0 Ensembl1244,615,821 - 244,781,633 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095776   ⟹   ENSRNOP00000095555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097032   ⟹   ENSRNOP00000079036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,329,374 - 224,358,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110315   ⟹   ENSRNOP00000080701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,191,184 - 224,358,637 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114205   ⟹   ENSRNOP00000082355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,331,655 - 224,358,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116235   ⟹   ENSRNOP00000089540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,329,911 - 224,358,684 (+)Ensembl
RefSeq Acc Id: NM_001004446   ⟹   NP_001004446
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,371 - 233,784,861 (+)NCBI
mRatBN7.21224,191,125 - 224,358,640 (+)NCBI
Rnor_6.01244,615,832 - 244,783,689 (+)NCBI
Rnor_5.01251,867,320 - 252,035,241 (+)NCBI
RGSC_v3.41230,015,057 - 230,183,451 (+)RGD
Celera1221,383,226 - 221,550,796 (+)RGD
Sequence:
RefSeq Acc Id: XM_063268502   ⟹   XP_063124572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,391 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268505   ⟹   XP_063124575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,352 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268509   ⟹   XP_063124579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,712 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268513   ⟹   XP_063124583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,534 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268522   ⟹   XP_063124592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,170 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268525   ⟹   XP_063124595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,047 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268527   ⟹   XP_063124597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,597 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268529   ⟹   XP_063124599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,619,161 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268533   ⟹   XP_063124603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,618,718 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268536   ⟹   XP_063124606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268545   ⟹   XP_063124615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,635,353 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268547   ⟹   XP_063124617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,782,647 (+)NCBI
RefSeq Acc Id: XM_063268552   ⟹   XP_063124622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,277 - 233,782,647 (+)NCBI
RefSeq Acc Id: XM_063268556   ⟹   XP_063124626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268559   ⟹   XP_063124629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268562   ⟹   XP_063124632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,584 - 233,784,908 (+)NCBI
RefSeq Acc Id: XM_063268564   ⟹   XP_063124634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,755,580 - 233,784,908 (+)NCBI
RefSeq Acc Id: XR_010055135
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81233,617,325 - 233,759,169 (+)NCBI
RefSeq Acc Id: NP_001004446   ⟸   NM_001004446
- UniProtKB: E9PTG1 (UniProtKB/TrEMBL),   Q6DUH4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069210   ⟸   ENSRNOT00000080124
Ensembl Acc Id: ENSRNOP00000016740   ⟸   ENSRNOT00000016740
Ensembl Acc Id: ENSRNOP00000095555   ⟸   ENSRNOT00000095776
Ensembl Acc Id: ENSRNOP00000082355   ⟸   ENSRNOT00000114205
Ensembl Acc Id: ENSRNOP00000080701   ⟸   ENSRNOT00000110315
Ensembl Acc Id: ENSRNOP00000089540   ⟸   ENSRNOT00000116235
Ensembl Acc Id: ENSRNOP00000079036   ⟸   ENSRNOT00000097032
RefSeq Acc Id: XP_063124606   ⟸   XM_063268536
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063124617   ⟸   XM_063268547
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JUS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124622   ⟸   XM_063268552
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JUS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124575   ⟸   XM_063268505
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124583   ⟸   XM_063268513
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124595   ⟸   XM_063268525
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124592   ⟸   XM_063268522
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124579   ⟸   XM_063268509
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124603   ⟸   XM_063268533
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124599   ⟸   XM_063268529
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124572   ⟸   XM_063268502
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124597   ⟸   XM_063268527
- Peptide Label: isoform X1
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL),   E9PTG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124615   ⟸   XM_063268545
- Peptide Label: isoform X3
- UniProtKB: Q6DUH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124634   ⟸   XM_063268564
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124626   ⟸   XM_063268556
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124632   ⟸   XM_063268562
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063124629   ⟸   XM_063268559
- Peptide Label: isoform X6
Protein Domains
Bromo   Helicase ATP-binding   Helicase C-terminal   HSA   QLQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTG1-F1-model_v2 AlphaFold E9PTG1 1-1597 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690852
Promoter ID:EPDNEW_R1360
Type:initiation region
Name:Smarca2_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily a, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01244,615,891 - 244,615,951EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302988 AgrOrtholog
BioCyc Gene G2FUF-56050 BioCyc
Ensembl Genes ENSRNOG00000011931 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016740.6 UniProtKB/TrEMBL
  ENSRNOT00000080124.2 UniProtKB/TrEMBL
  ENSRNOT00000095776.1 UniProtKB/TrEMBL
  ENSRNOT00000097032.1 UniProtKB/TrEMBL
  ENSRNOT00000110315.1 UniProtKB/TrEMBL
  ENSRNOT00000114205.1 UniProtKB/TrEMBL
  ENSRNOT00000116235.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.40.5.120 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro BRK_domain UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DEAD-like_helicase UniProtKB/TrEMBL
  Gln-Leu-Gln_QLQ UniProtKB/TrEMBL
  Helicase/SANT-assoc_DNA-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Rsc/polybromo UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report rno:361745 UniProtKB/TrEMBL
NCBI Gene 361745 ENTREZGENE
PANTHER PROTEIN POLYBROMO-1 UniProtKB/TrEMBL
  PTHR10799:SF541 UniProtKB/TrEMBL
  SNF2/RAD54 HELICASE FAMILY UniProtKB/TrEMBL
  SWI/SNF-RELATED UniProtKB/TrEMBL
Pfam BRK UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Smarca2 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011931 RatGTEx
SMART BRK UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  SSF160481 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JUS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZML8_RAT UniProtKB/TrEMBL
  A0A8I5ZRE0_RAT UniProtKB/TrEMBL
  A0A8I5ZUT5_RAT UniProtKB/TrEMBL
  A0A8I6A8Z4_RAT UniProtKB/TrEMBL
  A0A8I6ARN7 ENTREZGENE, UniProtKB/TrEMBL
  E9PTG1 ENTREZGENE, UniProtKB/TrEMBL
  Q6DUH4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Smarca2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Smarca2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2      Symbol and Name status set to provisional 70820 PROVISIONAL