Uhrf2 (ubiquitin like with PHD and ring finger domains 2) - Rat Genome Database

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Gene: Uhrf2 (ubiquitin like with PHD and ring finger domains 2) Rattus norvegicus
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Symbol: Uhrf2
Name: ubiquitin like with PHD and ring finger domains 2
RGD ID: 1309990
Description: Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity; histone binding activity; and ubiquitin-like protein transferase activity. Predicted to be involved in several processes, including negative regulation of gene expression via chromosomal CpG island methylation; protein autoubiquitination; and regulation of cell cycle. Predicted to be located in nucleoplasm and pericentric heterochromatin. Orthologous to human UHRF2 (ubiquitin like with PHD and ring finger domains 2); PARTICIPATES IN DNA modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase UHRF2; LOC309331; ubiquitin-like with PHD and ring finger domains 2; ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase; ubiquitin-like, containing PHD and RING finger domains 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,224,050 - 237,291,406 (+)NCBIGRCr8
mRatBN7.21227,814,639 - 227,877,907 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,814,963 - 227,877,904 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,216,934 - 236,279,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,146,619 - 243,209,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,968,772 - 236,031,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,228,496 - 248,291,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,228,496 - 248,291,978 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01255,476,029 - 255,539,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,777,723 - 233,841,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,941,745 - 234,005,366 (+)NCBI
Celera1224,961,724 - 225,024,651 (+)NCBICelera
Cytogenetic Map1q52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12176013   PMID:14741369   PMID:15178429   PMID:21598301   PMID:25931508  


Genomics

Comparative Map Data
Uhrf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,224,050 - 237,291,406 (+)NCBIGRCr8
mRatBN7.21227,814,639 - 227,877,907 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,814,963 - 227,877,904 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,216,934 - 236,279,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,146,619 - 243,209,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,968,772 - 236,031,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,228,496 - 248,291,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,228,496 - 248,291,978 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01255,476,029 - 255,539,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,777,723 - 233,841,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,941,745 - 234,005,366 (+)NCBI
Celera1224,961,724 - 225,024,651 (+)NCBICelera
Cytogenetic Map1q52NCBI
UHRF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3896,413,199 - 6,507,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl96,413,151 - 6,507,056 (+)EnsemblGRCh38hg38GRCh38
GRCh3796,413,199 - 6,507,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3696,403,151 - 6,497,051 (+)NCBINCBI36Build 36hg18NCBI36
Celera96,350,611 - 6,444,524 (+)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef96,368,448 - 6,462,031 (+)NCBIHuRef
CHM1_196,413,916 - 6,507,825 (+)NCBICHM1_1
T2T-CHM13v2.096,418,255 - 6,512,105 (+)NCBIT2T-CHM13v2.0
Uhrf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391930,007,920 - 30,071,126 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1930,007,913 - 30,071,122 (+)EnsemblGRCm39 Ensembl
GRCm381930,030,430 - 30,093,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,030,513 - 30,093,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv371930,105,003 - 30,168,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,096,600 - 30,159,723 (+)NCBIMGSCv36mm8
Celera1930,805,906 - 30,868,941 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.73NCBI
Uhrf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543410,337,564 - 10,413,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543410,337,871 - 10,413,290 (+)NCBIChiLan1.0ChiLan1.0
UHRF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211118,069,622 - 118,163,049 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19118,075,570 - 118,168,985 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v096,228,895 - 6,322,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.196,409,081 - 6,502,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl96,409,081 - 6,502,484 (+)Ensemblpanpan1.1panPan2
UHRF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11127,406,275 - 27,474,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1127,405,977 - 27,623,005 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1126,181,369 - 26,258,264 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01128,256,562 - 28,333,875 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1128,256,658 - 28,333,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11126,980,701 - 27,057,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01126,799,633 - 26,876,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01127,468,621 - 27,545,966 (+)NCBIUU_Cfam_GSD_1.0
Uhrf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947142,457,520 - 142,537,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936539910,172 - 992,983 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936539910,191 - 990,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UHRF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,730,225 - 215,807,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,730,212 - 215,807,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,357,141 - 241,363,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UHRF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11273,010,697 - 73,106,163 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1273,007,830 - 73,106,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603861,349,917 - 61,448,467 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uhrf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473610,913,643 - 11,003,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473610,901,260 - 11,004,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uhrf2
422 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:94
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000015406
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
8693661Alc34Alcohol consumption QTL 342.20.611drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464228627600Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1207702246228581766Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1223262787260522016Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
8693618Alc25Alcohol consumption QTL 2530.28drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464228627600Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat

Markers in Region
RH142949  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,837,535 - 227,837,676 (+)MAPPERmRatBN7.2
Rnor_6.01248,251,618 - 248,251,758NCBIRnor6.0
Rnor_5.01255,499,151 - 255,499,291UniSTSRnor5.0
RGSC_v3.41233,800,977 - 233,801,117UniSTSRGSC3.4
Celera1224,984,285 - 224,984,425UniSTS
RH 3.4 Map11616.6UniSTS
Cytogenetic Map1q52UniSTS
BF413085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,814,162 - 227,814,317 (+)MAPPERmRatBN7.2
Rnor_6.01248,227,696 - 248,227,850NCBIRnor6.0
Rnor_5.01255,475,229 - 255,475,383UniSTSRnor5.0
RGSC_v3.41233,776,923 - 233,777,077UniSTSRGSC3.4
Celera1224,960,924 - 224,961,078UniSTS
RH 3.4 Map11616.6UniSTS
Cytogenetic Map1q52UniSTS
RH135184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,867,943 - 227,868,157 (+)MAPPERmRatBN7.2
Rnor_6.01248,282,024 - 248,282,237NCBIRnor6.0
Rnor_5.01255,529,557 - 255,529,770UniSTSRnor5.0
RGSC_v3.41233,831,383 - 233,831,596UniSTSRGSC3.4
Celera1225,014,691 - 225,014,904UniSTS
RH 3.4 Map11618.8UniSTS
Cytogenetic Map1q52UniSTS
BI275765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21227,877,511 - 227,877,682 (+)MAPPERmRatBN7.2
Rnor_6.01248,291,592 - 248,291,762NCBIRnor6.0
Rnor_5.01255,539,125 - 255,539,295UniSTSRnor5.0
RGSC_v3.41233,840,951 - 233,841,121UniSTSRGSC3.4
Celera1225,024,259 - 225,024,429UniSTS
RH 3.4 Map11617.6UniSTS
Cytogenetic Map1q52UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000015406   ⟹   ENSRNOP00000015406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1227,814,963 - 227,877,904 (+)Ensembl
Rnor_6.0 Ensembl1248,228,496 - 248,291,978 (+)Ensembl
RefSeq Acc Id: NM_001107585   ⟹   NP_001101055
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,228,475 - 237,291,406 (+)NCBI
mRatBN7.21227,814,963 - 227,877,904 (+)NCBI
Rnor_6.01248,228,496 - 248,291,984 (+)NCBI
Rnor_5.01255,476,029 - 255,539,517 (+)NCBI
RGSC_v3.41233,777,723 - 233,841,343 (+)RGD
Celera1224,961,724 - 225,024,651 (+)RGD
Sequence:
RefSeq Acc Id: XM_039080008   ⟹   XP_038935936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,237,513 - 237,291,406 (+)NCBI
mRatBN7.21227,824,007 - 227,877,907 (+)NCBI
RefSeq Acc Id: XM_039080012   ⟹   XP_038935940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,224,050 - 237,282,731 (+)NCBI
mRatBN7.21227,814,639 - 227,868,351 (+)NCBI
RefSeq Acc Id: XR_005486766
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,224,050 - 237,285,401 (+)NCBI
mRatBN7.21227,814,639 - 227,877,076 (+)NCBI
RefSeq Acc Id: XR_005486773
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,224,050 - 237,283,299 (+)NCBI
mRatBN7.21227,814,639 - 227,869,772 (+)NCBI
RefSeq Acc Id: XR_005486776
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81237,224,050 - 237,283,299 (+)NCBI
mRatBN7.21227,814,639 - 227,869,772 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101055 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935936 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935940 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM13110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015406.3
RefSeq Acc Id: NP_001101055   ⟸   NM_001107585
- UniProtKB: D3ZK36 (UniProtKB/TrEMBL),   A6I0X9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015406   ⟸   ENSRNOT00000015406
RefSeq Acc Id: XP_038935940   ⟸   XM_039080012
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935936   ⟸   XM_039080008
- Peptide Label: isoform X1
Protein Domains
PHD-type   RING-type   Ubiquitin-like   YDG

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZK36-F1-model_v2 AlphaFold D3ZK36 1-803 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690850
Promoter ID:EPDNEW_R1375
Type:initiation region
Name:Uhrf2_1
Description:ubiquitin like with PHD and ring finger domains 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01248,228,572 - 248,228,632EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309990 AgrOrtholog
BioCyc Gene G2FUF-55944 BioCyc
Ensembl Genes ENSRNOG00000011308 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015406.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.280.10 UniProtKB/TrEMBL
  2.30.30.1150 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro DUF3590 UniProtKB/TrEMBL
  PHD_UHRF2 UniProtKB/TrEMBL
  PUA-like_domain UniProtKB/TrEMBL
  RING-HC_UHRF2 UniProtKB/TrEMBL
  SRA-YDG_sf UniProtKB/TrEMBL
  SRA_YDG UniProtKB/TrEMBL
  Ubiquitin UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  Ubl_UHRF2 UniProtKB/TrEMBL
  UHRF1/2-like UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:309331 UniProtKB/TrEMBL
NCBI Gene 309331 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF2 UniProtKB/TrEMBL
  PTHR14140 UniProtKB/TrEMBL
Pfam DUF3590 UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
  YDG_SRA UniProtKB/TrEMBL
PhenoGen Uhrf2 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
  YDG UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011308 RatGTEx
SMART PHD UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SRA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
  SSF88697 UniProtKB/TrEMBL
UniProt A6I0X9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZK36 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Uhrf2  ubiquitin like with PHD and ring finger domains 2  Uhrf2  ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-26 Uhrf2  ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase  Uhrf2  ubiquitin-like with PHD and ring finger domains 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Uhrf2  ubiquitin-like with PHD and ring finger domains 2  Uhrf2  ubiquitin-like, containing PHD and RING finger domains 2   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Uhrf2  ubiquitin-like, containing PHD and RING finger domains 2   Uhrf2_predicted  ubiquitin-like, containing PHD and RING finger domains 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Uhrf2_predicted  ubiquitin-like, containing PHD and RING finger domains 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED