Bw173 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw173 (Body weight QTL 173) Rattus norvegicus

Symbol: Bw173
Name: Body weight QTL 173
RGD ID: 10059587
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 3.23
P Value: 0.025
Variance: 16.4
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,069,611 - 247,069,611RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01222,492,538 - 267,492,538RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01229,743,799 - 274,743,799RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41207,911,272 - 252,911,272RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: ISIAH WAG/Nov 




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173RatStress-Induced Hypertension  IDA 10053637 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173Ratincreased body weight  IDA 10053637 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173Ratbody weight  IDA 10053637 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173Ratcontrol condition  IDA 10053637 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173Ratscale  IDA 10053637 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173RatISIAH  IEA 10053637 RGD 
Bw173RatWAG/Nov  IEA 10053637 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw173Ratbody mass  IDA 10053637 RGD 


#
Reference Title
Reference Citation
1. The genetic control of blood pressure and body composition in rats with stress-sensitive hypertension. Redina OE, etal., Clin Exp Hypertens. 2013;35(7):484-95. doi: 10.3109/10641963.2012.758274. Epub 2013 Jan 9.


1 to 20 of 896 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
620542Rbm14RNA binding motif protein 141202076940202105688Rat
1306891Rbm4RNA binding motif protein 41202078442202087506Rat
620403Ccscopper chaperone for superoxide dismutase1202113792202134931Rat
1596153Ccdc87coiled-coil domain containing 871202135021202137717Rat
1308181Ctsfcathepsin F1202152777202158525Rat
621792Actn3actinin alpha 31202159081202175012Rat
1565630Zdhhc24zinc finger, DHHC-type containing 241202175832202181943Rat
1307581Bbs1Bardet-Biedl syndrome 11202184812202204118Rat
621127Dpp3dipeptidylpeptidase 31202204683202228501Rat
41399150LOC120099977uncharacterized LOC1200999771202204999202206841Rat
1305989Peli3pellino E3 ubiquitin protein ligase family member 31202230034202242900Rat
1359665Mrpl11mitochondrial ribosomal protein L111202264419202267288Rat
628866Npas4neuronal PAS domain protein 41202281260202298681Rat
41265789LOC120100403small nucleolar RNA SNORA481202311159202311295Rat
69296Slc29a2solute carrier family 29 member 21202327641202335185Rat
11425556Trnas-gcu2transfer RNA serine (anticodon GCU) 21202342699202342780Rat
1309541B4gat1beta-1,4-glucuronyltransferase 11202343268202345490Rat
1311057Brms1BRMS1, transcriptional repressor and anoikis regulator1202345766202355028Rat
620006Rin1Ras and Rab interactor 11202355729202362731Rat
1310404Cd248CD248 molecule1202373676202376240Rat

1 to 20 of 896 rows
1 to 20 of 1118 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10432D1Mgh243011245542075245542378Ratregion
10445D1Wox251821238755477238755659Ratregion
10446D1Mgh291061238755490238755596Ratregion
10805D1Mgh131381245907761245907899Ratregion
11060D1Wox231981206329708206330200Ratregion
11060D1Wox231981206330002206330200Ratregion
11060D1Wox231981206468994206469032Ratregion
11148D1Mgh251961229550480229550676Ratregion
11179D1Arb393281206497320206497652Ratregion
11179D1Arb393281206497320206497652Ratregion
33830D1Mit321491244113147244113296Ratregion
33945D1Mit181271218753689218753816Ratregion
34009D1Mit341051225126575225126682Ratregion
34517D1Mgh321091241799011241799120Ratregion
33569D1Mit311791245480298245480477Ratregion
36021D1Rat1151601209979959209980119Ratregion
36083D1Rat1191731236036277236036450Ratregion
36219D1Rat3841481223390805223390953Ratregion
37506D1Rat1512401244863660244863900Ratregion
35266D1Rat791251240698709240698822Ratregion
1 to 20 of 1118 rows

Peak: (D1Rat76)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21224,569,538 - 224,569,684 (+)MAPPER
Rnor_6.01244,992,467 - 244,992,610NCBI
Rnor_5.01252,243,728 - 252,243,871UniSTS
RGSC_v3.41230,411,111 - 230,411,254UniSTS
RGSC_v3.41230,411,091 - 230,411,453RGD
RGSC_v3.11230,575,134 - 230,575,277RGD
Celera1221,760,461 - 221,760,604UniSTS
RH 3.4 Map11612.0RGD
RH 3.4 Map11612.0UniSTS
SHRSP x BN Map1125.42UniSTS
SHRSP x BN Map1125.42RGD
FHH x ACI Map1111.18RGD


1 to 10 of 131 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat

1 to 10 of 131 rows


Note Type Note Reference
qtl_general number of animals used: 103, 3-4 months old F2 males 10053637
qtl_general software package used: ANOVA, MAPMAKER/EXP 3.0, MAPMAKER/QTL 1.1 10053637
qtl_general measurement method: animals were maintained under normal conditions, and body weight was determined 10053637
qtl_general confidence interval: 224-267.9 Mb 10053637