Lcor (ligand dependent nuclear receptor corepressor) - Rat Genome Database

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Gene: Lcor (ligand dependent nuclear receptor corepressor) Rattus norvegicus
Analyze
Symbol: Lcor
Name: ligand dependent nuclear receptor corepressor
RGD ID: 1311704
Description: Predicted to enable several functions, including enzyme binding activity; nuclear estrogen receptor binding activity; and transcription corepressor binding activity. Predicted to be involved in cellular response to estradiol stimulus and transcription initiation-coupled chromatin remodeling. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II and transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human LCOR (ligand dependent nuclear receptor corepressor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: ligand-dependent corepressor; LOC100911430; LOC365462; RGD1311704; similar to DKFZP564P1916 protein; uncharacterized LOC100911430; uncharacterized protein C10orf12
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,247,965 - 250,354,985 (+)NCBIGRCr8
mRatBN7.21240,298,565 - 240,405,627 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,298,563 - 240,402,448 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,441,750 - 248,548,793 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,138,875 - 255,245,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,791,893 - 247,898,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01260,775,091 - 260,839,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01260,789,955 - 260,809,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1260,732,485 - 260,830,854 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,187,859 - 268,287,882 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,702,984 - 246,800,587 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11246,818,012 - 246,915,428 (+)NCBI
Celera1236,138,607 - 236,245,268 (+)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12560079   PMID:17392792   PMID:30361391  


Genomics

Comparative Map Data
Lcor
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,247,965 - 250,354,985 (+)NCBIGRCr8
mRatBN7.21240,298,565 - 240,405,627 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,298,563 - 240,402,448 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,441,750 - 248,548,793 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,138,875 - 255,245,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,791,893 - 247,898,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01260,775,091 - 260,839,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01260,789,955 - 260,809,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1260,732,485 - 260,830,854 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,187,859 - 268,287,882 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,702,984 - 246,800,587 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11246,818,012 - 246,915,428 (+)NCBI
Celera1236,138,607 - 236,245,268 (+)NCBICelera
Cytogenetic Map1q54NCBI
LCOR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381096,832,298 - 96,995,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1096,832,254 - 96,995,956 (+)EnsemblGRCh38hg38GRCh38
GRCh371098,592,055 - 98,755,713 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361098,582,727 - 98,708,655 (+)NCBINCBI36Build 36hg18NCBI36
Celera1092,333,590 - 92,465,797 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,221,267 - 92,352,266 (+)NCBIHuRef
CHM1_11098,873,752 - 99,006,489 (+)NCBICHM1_1
T2T-CHM13v2.01097,713,211 - 97,876,841 (+)NCBIT2T-CHM13v2.0
Lcor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391941,471,121 - 41,584,600 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1941,471,076 - 41,574,975 (+)EnsemblGRCm39 Ensembl
GRCm381941,482,682 - 41,596,161 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1941,482,637 - 41,586,536 (+)EnsemblGRCm38mm10GRCm38
MGSCv371941,624,129 - 41,634,271 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361941,602,950 - 41,613,092 (+)NCBIMGSCv36mm8
Celera1942,347,665 - 42,357,805 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1934.97NCBI
LCOR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28108,746,901 - 108,898,139 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110108,752,221 - 108,903,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01093,454,741 - 93,609,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11096,953,511 - 97,106,845 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1097,067,801 - 97,106,845 (+)Ensemblpanpan1.1panPan2
LCOR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,192,587 - 10,337,556 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,193,748 - 10,335,626 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2810,377,753 - 10,529,390 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02810,514,666 - 10,667,693 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2810,462,893 - 10,659,912 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,176,823 - 10,329,346 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,237,535 - 10,389,797 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02810,377,331 - 10,530,360 (+)NCBIUU_Cfam_GSD_1.0
Lcor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,551,541 - 36,681,047 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,595,394 - 2,626,824 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,594,777 - 2,720,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100627422
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,304,048 - 108,436,982 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,304,010 - 108,443,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214117,940,134 - 118,079,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LCOR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,009,449 - 90,157,340 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,152,909 - 90,156,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604850,898,268 - 51,059,239 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lcor
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247378,369,522 - 8,446,114 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247378,302,285 - 8,456,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lcor
626 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:51
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000036791
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat

Markers in Region
D1Got237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,318,000 - 240,318,215 (+)MAPPERmRatBN7.2
Rnor_6.01260,751,926 - 260,752,142NCBIRnor6.0
Rnor_5.01268,207,195 - 268,207,411UniSTSRnor5.0
RGSC_v3.41246,722,375 - 246,722,592RGDRGSC3.4
RGSC_v3.41246,722,376 - 246,722,592UniSTSRGSC3.4
RGSC_v3.11246,836,851 - 246,837,067RGD
Celera1236,157,965 - 236,158,181UniSTS
RH 3.4 Map11620.01UniSTS
RH 3.4 Map11620.01RGD
RH 2.0 Map11216.4RGD
Cytogenetic Map1q54UniSTS
D1Got232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,317,869 - 240,318,141 (+)MAPPERmRatBN7.2
Rnor_6.01260,751,797 - 260,752,068NCBIRnor6.0
Rnor_5.01268,207,066 - 268,207,337UniSTSRnor5.0
RGSC_v3.41246,722,246 - 246,722,518RGDRGSC3.4
RGSC_v3.41246,722,247 - 246,722,518UniSTSRGSC3.4
RGSC_v3.11246,836,722 - 246,836,993RGD
Celera1236,157,836 - 236,158,107UniSTS
RH 3.4 Map11619.32UniSTS
RH 3.4 Map11619.32RGD
RH 2.0 Map11221.9RGD
Cytogenetic Map1q54UniSTS
RH143055  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,373,795 - 240,373,961 (+)MAPPERmRatBN7.2
Rnor_6.01260,807,723 - 260,807,888NCBIRnor6.0
Rnor_5.01268,262,920 - 268,263,085UniSTSRnor5.0
RGSC_v3.41246,778,148 - 246,778,313UniSTSRGSC3.4
Celera1236,213,461 - 236,213,626UniSTS
RH 3.4 Map11619.22UniSTS
Cytogenetic Map1q54UniSTS
BF413669  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,297,541 - 240,297,646 (+)MAPPERmRatBN7.2
Rnor_6.01260,731,471 - 260,731,575NCBIRnor6.0
Rnor_5.01268,186,740 - 268,186,844UniSTSRnor5.0
RGSC_v3.41246,701,920 - 246,702,024UniSTSRGSC3.4
Celera1236,137,641 - 236,137,745UniSTS
RH 3.4 Map11617.51UniSTS
Cytogenetic Map1q54UniSTS
RH139377  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,350,734 - 240,350,815 (+)MAPPERmRatBN7.2
Rnor_6.01260,784,660 - 260,784,740NCBIRnor6.0
Rnor_5.01268,239,929 - 268,240,009UniSTSRnor5.0
RGSC_v3.41246,755,133 - 246,755,213UniSTSRGSC3.4
Celera1236,190,638 - 236,190,718UniSTS
Cytogenetic Map1q54UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 21 5 16 5 8 8 45 22 14 8 8
Low 3 38 35 35 3 35 3 29 13 26 3
Below cutoff 1 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001372249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000036791   ⟹   ENSRNOP00000036836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1260,798,239 - 260,804,901 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076073   ⟹   ENSRNOP00000068079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1240,298,608 - 240,397,602 (+)Ensembl
Rnor_6.0 Ensembl1260,732,502 - 260,830,854 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076842   ⟹   ENSRNOP00000068372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1240,298,909 - 240,373,297 (+)Ensembl
Rnor_6.0 Ensembl1260,732,485 - 260,807,926 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114870   ⟹   ENSRNOP00000076922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1240,356,508 - 240,373,297 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114892   ⟹   ENSRNOP00000076484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1240,298,563 - 240,402,448 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116728   ⟹   ENSRNOP00000083926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1240,298,596 - 240,402,448 (+)Ensembl
RefSeq Acc Id: NM_001372249   ⟹   NP_001359178
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,307,190 - 250,320,650 (+)NCBI
mRatBN7.21240,357,830 - 240,371,290 (+)NCBI
RefSeq Acc Id: NM_001401972   ⟹   NP_001388901
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,247,965 - 250,354,985 (+)NCBI
mRatBN7.21240,298,601 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_006231418   ⟹   XP_006231480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,247,986 - 250,354,985 (+)NCBI
mRatBN7.21240,298,565 - 240,405,627 (+)NCBI
Rnor_6.01260,775,091 - 260,839,549 (+)NCBI
Rnor_5.01268,187,859 - 268,287,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085688   ⟹   XP_038941616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,248,226 - 250,354,985 (+)NCBI
mRatBN7.21240,298,924 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_039085693   ⟹   XP_038941621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,247,987 - 250,354,985 (+)NCBI
mRatBN7.21240,298,565 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_039085706   ⟹   XP_038941634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,248,013 - 250,354,985 (+)NCBI
mRatBN7.21240,298,565 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_039085713   ⟹   XP_038941641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,248,226 - 250,354,985 (+)NCBI
mRatBN7.21240,298,924 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_039085725   ⟹   XP_038941653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,247,986 - 250,354,985 (+)NCBI
mRatBN7.21240,298,565 - 240,405,627 (+)NCBI
RefSeq Acc Id: XM_039085738   ⟹   XP_038941666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,248,226 - 250,328,797 (+)NCBI
mRatBN7.21240,298,945 - 240,379,438 (+)NCBI
RefSeq Acc Id: XM_063269996   ⟹   XP_063126066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,248,226 - 250,354,985 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006231480   ⟸   XM_006231418
- Peptide Label: isoform X3
- UniProtKB: A0A096MJC8 (UniProtKB/TrEMBL),   A0A8I6A097 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000036836   ⟸   ENSRNOT00000036791
RefSeq Acc Id: ENSRNOP00000068372   ⟸   ENSRNOT00000076842
RefSeq Acc Id: ENSRNOP00000068079   ⟸   ENSRNOT00000076073
RefSeq Acc Id: XP_038941621   ⟸   XM_039085693
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y016 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941653   ⟸   XM_039085725
- Peptide Label: isoform X3
- UniProtKB: A0A096MJC8 (UniProtKB/TrEMBL),   A0A8I6A097 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941634   ⟸   XM_039085706
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y016 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941616   ⟸   XM_039085688
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y016 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941641   ⟸   XM_039085713
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y016 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941666   ⟸   XM_039085738
- Peptide Label: isoform X4
- UniProtKB: A0A096MK42 (UniProtKB/TrEMBL),   A0A8I5Y0Y8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001359178   ⟸   NM_001372249
- Peptide Label: isoform 1
- UniProtKB: A6JH78 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076922   ⟸   ENSRNOT00000114870
RefSeq Acc Id: ENSRNOP00000076484   ⟸   ENSRNOT00000114892
RefSeq Acc Id: ENSRNOP00000083926   ⟸   ENSRNOT00000116728
RefSeq Acc Id: NP_001388901   ⟸   NM_001401972
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063126066   ⟸   XM_063269996
- Peptide Label: isoform X2
Protein Domains
HTH psq-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJC8-F1-model_v2 AlphaFold A0A096MJC8 1-561 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311704 AgrOrtholog
BioCyc Gene G2FUF-55684 BioCyc
Ensembl Genes ENSRNOG00000042679 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076073.3 UniProtKB/TrEMBL
  ENSRNOT00000076842.3 UniProtKB/TrEMBL
  ENSRNOT00000114870.1 UniProtKB/TrEMBL
  ENSRNOT00000114892 ENTREZGENE
  ENSRNOT00000114892.1 UniProtKB/TrEMBL
  ENSRNOT00000116728.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro DUF4553 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  HTH_Psq UniProtKB/TrEMBL
NCBI Gene 365462 ENTREZGENE
PANTHER LIGAND DEPENDENT NUCLEAR RECEPTOR COREPRESSOR UniProtKB/TrEMBL
  LIGAND-DEPENDENT COREPRESSOR UniProtKB/TrEMBL
  PTHR14931 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR MLR1/2 UniProtKB/TrEMBL
Pfam DUF4553 UniProtKB/TrEMBL
  HTH_psq UniProtKB/TrEMBL
PhenoGen Lcor PhenoGen
PROSITE HTH_PSQ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042679 RatGTEx
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A096MJC8 ENTREZGENE, UniProtKB/TrEMBL
  A0A096MK42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y016 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y0Y8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A097 ENTREZGENE, UniProtKB/TrEMBL
  A6JH78 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Lcor  ligand dependent nuclear receptor corepressor  LOC100911430  uncharacterized LOC100911430  Data merged from RGD:6492977 737654 PROVISIONAL
2013-05-24 Lcor  ligand dependent nuclear receptor corepressor  LOC679031  similar to Mblk1-related protein-2  Data merged from RGD:1593093 1643240 APPROVED
2012-07-05 LOC100911430  uncharacterized LOC100911430      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-27 Lcor  ligand dependent nuclear receptor corepressor  RGD1311704_predicted  similar to DKFZP564P1916 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC679031  similar to Mblk1-related protein-2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1311704_predicted  similar to DKFZP564P1916 protein (predicted)  LOC365462_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365462_predicted  similar to DKFZP564P1916 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL