Scl5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl5 (Serum cholesterol level QTL 5) Rattus norvegicus

Symbol: Scl5
Name: Serum cholesterol level QTL 5
RGD ID: 631690
Previously known as: Stl3; Serum triglyceride level QTL 3
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 2.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21236,125,214 - 260,522,016RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01258,132,568 - 282,763,074RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01265,492,278 - 290,094,216RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41243,502,887 - 267,910,886RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.11243,713,932 - 268,121,971RGD
Cross Type: Not Available
Strains Crossed: BB/OK SHR/Mol 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BB/OK  (IEA)
SHR/Mol  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci on chromosomes 1 and 4 affect lipid phenotypes in the rat. Kovacs P and Kloting I, Arch Biochem Biophys 1998 Jun 1;354(1):139-43.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1595908Slc35g1solute carrier family 35, member G11236163593236172115Rat
69424Plce1phospholipase C, epsilon 11236243445236552571Rat
7536824Sephs1-ps1selenophosphate synthetase 1, pseudogene 11236309546236310671Rat
1560656Noc3lNOC3-like DNA replication regulator1236556037236585372Rat
9377071Tbc1d12TBC1 domain family, member 121236603597236685859Rat
1309820Hellshelicase, lymphoid specific1236701704236748239Rat
11437438Rpl35al10ribosomal protein L35A like 101236705133236705600Rat
41289643Rpl27a-ps13ribosomal protein L27a, pseudogene 131236760660236762396Rat
2469Cyp2c11cytochrome P450, subfamily 2, polypeptide 111236762719236799069Rat
1563697Cyp2c24cytochrome P450, family 2, subfamily c, polypeptide 241236873967236936238Rat
41136177Rnu6-571RNA, U6 small nuclear 5711236964451236964553Rat
11406254LOC10834910440S ribosomal protein S8 pseudogene1236965480236966094Rat
2320073Cyp2c55cytochrome P450, family 2, subfamily c, polypeptide 551237009411237054555Rat
6488119Cyp2c66cytochrome P450, family 2, subfamily c, polypeptide 661237078517237169841Rat
41178207Cyp2c6-ps3cytochrome P450, family 2, subfamily C, polypeptide 6, pseudogene 31237228235237233616Rat
41261854Cyp2c6l1cytochrome P450, family 2, subfamily C, polypeptide 6 like 11237244891237283416Rat
41270400LOC120100168U6 spliceosomal RNA1237316377237316482Rat
620379Cyp2c7cytochrome P450, family 2, subfamily c, polypeptide 71237332641237388714Rat
41066878LOC120100152U6 spliceosomal RNA1237403828237403930Rat
40939684Cyp2c6-ps4cytochrome P450, family 2, subfamily C, polypeptide 6, pseudogene 41237673566237678251Rat
6491302LOC100911718cytochrome P450 2C6-like1237693101237722462Rat
41210766LOC120100165U6 spliceosomal RNA1237755141237755246Rat
41099479LOC120098584cytochrome P450 2C7-like1237771336237834092Rat
41391967LOC120100177U6 spliceosomal RNA1237852631237852728Rat
41285154Cyp2c6-ps5cytochrome P450, family 2, subfamily C, polypeptide 6, pseudogene 51237919053237923665Rat
619934Cyp2c6cytochrome P450, family 2, subfamily C, polypeptide 61237938521237976238Rat
2320131Cyp2c66lcytochrome P450, family 2, subfamily c, polypeptide 66 like1238215982238266699Rat
41303954LOC120100032uncharacterized LOC1201000321238291013238316860Rat
2323640Cyp2c6-ps1cytochrome P450, family 2, subfamily C, polypeptide 6, pseudogene 11238332354238339457Rat
11466397Cyp2c6-ps2cytochrome P450, family 2, subfamily C, polypeptide 6, pseudogene 21238352261238391716Rat
2319920Cyp2c7l1cytochrome P450, family 2, subfamily c, polypeptide 7 like 11238457701238466744Rat
41048873LOC120100034uncharacterized LOC1201000341238607015238665792Rat
2470Cyp2c12cytochrome P450, family 2, subfamily c, polypeptide 121238699859238757011Rat
620363Cyp2c13cytochrome P450, family 2, subfamily c, polypeptide 131238786764238867195Rat
40974054LOC120100134U6 spliceosomal RNA1238926408238926515Rat
620368Cyp2c22cytochrome P450, family 2, subfamily c, polypeptide 221238991698239031323Rat
68324Pdlim1PDZ and LIM domain 11239042372239091074Rat
1586598Sorbs1sorbin and SH3 domain containing 11239107882239330276Rat
40961697LOC120097534uncharacterized LOC1200975341239197281239204076Rat
7640229LOC102555231uncharacterized LOC1025552311239335354239350999Rat
1311431Aldh18a1aldehyde dehydrogenase 18 family, member A11239375657239407956Rat
14398574Mir6317-1microRNA mir-6317-11239398926239399052Rat
1305166Tctn3tectonic family member 31239414003239425273Rat
6486355Hnrnpc-ps6heterogeneous nuclear ribonucleoprotein C, pseudogene 61239425495239429608Rat
69265Entpd1ectonucleoside triphosphate diphosphohydrolase 11239425515239552323Rat
41012984LOC120097545uncharacterized LOC1200975451239484888239496808Rat
1310408Cc2d2bcoiled-coil and C2 domain containing 2B1239561506239655771Rat
1306399Ccnjcyclin J1239659588239677367Rat
41246778LOC120100114U4 spliceosomal RNA1239700173239700374Rat
1305314Zfp518azinc finger protein 518A1239719305239744978Rat
1561933BlnkB-cell linker1239753640239821113Rat
1305054DnttDNA nucleotidylexotransferase1239856391239888283Rat
41363471LOC120100035uncharacterized LOC1201000351239872667239883614Rat
1307776Opalinoligodendrocytic myelin paranodal and inner loop protein1239891137239909388Rat
1559756Tll2tolloid-like 21239912648240028168Rat
40981719LOC120100036uncharacterized LOC1201000361239932606239939339Rat
1564625Tm9sf3transmembrane 9 superfamily member 31240032060240085125Rat
1307744Pik3ap1phosphoinositide-3-kinase adaptor protein 11240090854240245007Rat
1311704Lcorligand dependent nuclear receptor corepressor1240298565240405627Rat
69307Slit1slit guidance ligand 11240409559240558127Rat
1593044Arhgap19Rho GTPase activating protein 191240571554240617361Rat
7718071LOC102553733uncharacterized LOC1025537331240625369240638280Rat
9147096Frat1FRAT regulator of WNT signaling pathway 11240638309240640857Rat
1591882Frat2FRAT regulator of WNT signaling pathway 21240654120240656449Rat
1591867Rrp12ribosomal RNA processing 121240672378240705992Rat
3312Pgam1phosphoglycerate mutase 11240723832240731443Rat
1591855Exosc1exosome component 11240734777240745431Rat
1591893Zdhhc16zinc finger DHHC-type palmitoyltransferase 161240745606240757009Rat
727890Mms19MMS19 homolog, cytosolic iron-sulfur assembly component1240757279240794291Rat
41239575LOC120100188U6 spliceosomal RNA1240788425240788524Rat
1308172Ubtd1ubiquitin domain containing 11240794570240845795Rat
1305104Ankrd2ankyrin repeat domain 21240847111240856563Rat
1310475Hoga14-hydroxy-2-oxoglutarate aldolase 11240856991240884243Rat
1588156MGC93861hypothetical protein LOC6820101240863403240864762Rat
1307336Morn4MORN repeat containing 41240888338240898644Rat
620485Pi4k2aphosphatidylinositol 4-kinase type 2 alpha1240902804240929234Rat
621721Avpi1arginine vasopressin-induced 11240930236240936154Rat
7605594LOC102554176uncharacterized LOC1025541761240939155240942812Rat
1309811Marveld1MARVEL domain containing 11240954050240958101Rat
735177Zfyve27zinc finger FYVE-type containing 271240979831241003193Rat
1310369Sfrp5secreted frizzled-related protein 51241006762241011224Rat
41344988Josd2-ps1Josephin domain containing 2, pseudogene 11241012586241031268Rat
7501631LOC102547392uncharacterized LOC1025473921241048266241059019Rat
1583839Golga7bgolgin A7 family, member B1241056427241080890Rat
4888610Mir3085microRNA 30851241088905241088993Rat
621085Crtac1cartilage acidic protein 11241091679241233677Rat
1307934R3hcc1lR3H domain and coiled-coil containing 1-like1241317199241395240Rat
41348011LOC120100039uncharacterized LOC1201000391241329290241343424Rat
1308588Loxl4lysyl oxidase-like 41241396183241416385Rat
41276096LOC120100456small nucleolar RNA SNORA171241497983241498105Rat
1303232Pyroxd2pyridine nucleotide-disulphide oxidoreductase domain 21241523278241549083Rat
69193Hps1HPS1, biogenesis of lysosomal organelles complex 3 subunit 11241551180241577292Rat
1307959Hpse2heparanase 2 (inactive)1241582904242284348Rat
7554188Tdpoz1-ps20TD and POZ domain containing 1, pseudogene 201241613455241616687Rat
7546946Pak1-ps1p21 (RAC1) activated kinase 1, pseudogene 11241780638241787272Rat
1308728Cnnm1cyclin and CBS domain divalent metal cation transport mediator 11242296367242354957Rat
2721Got1glutamic-oxaloacetic transaminase 11242357293242381535Rat
41207320Trit1-ps1tRNA isopentenyltransferase 1, pseudogene 11242387348242412800Rat
1308521Nkx2-3NK2 homeobox 31242478130242481083Rat
1584155Slc25a28solute carrier family 25 member 281242530877242542140Rat
1310638Entpd7ectonucleoside triphosphate diphosphohydrolase 71242559365242601044Rat
1312043Cox15cytochrome c oxidase assembly homolog COX151242605588242622279Rat
1304966CutccutC copper transporter1242622281242637048Rat
7555190Cstb-ps1cystatin B, pseudogene 11242661894242662481Rat
2366Abcc2ATP binding cassette subfamily C member 21242664657242723239Rat
1583840Dnmbpdynamin binding protein1242736189242829431Rat
70931Cpn1carboxypeptidase N subunit 11242844575242873465Rat
41096103Csnk2a1-ps2casein kinase 2 alpha 1, pseudogene 21242861730242865414Rat
620370Cyp2c23cytochrome P450, family 2, subfamily c, polypeptide 231242889218242913869Rat
1307058Erlin1ER lipid raft associated 11242921147242956472Rat
1306661Chukcomponent of inhibitor of nuclear factor kappa B kinase complex1242959539242995066Rat
1304716Cwf19l1CWF19 like cell cycle control factor 11242997720243020989Rat
41366654Snora12small nucleolar RNA, H/ACA box 121243001398243001540Rat
1306551Bloc1s2biogenesis of lysosomal organelles complex-1, subunit 21243024611243031749Rat
1306261Pkd2l1polycystin 2 like 1, transient receptor potential cation channel1243032891243070031Rat
40956323Rnu6-630RNA, U6 small nuclear 6301243043698243043804Rat
1595370Scd3stearoyl-coenzyme A desaturase 31243093057243114451Rat
41009383Scd-ps1stearoyl-CoA desaturase, pseudogene 11243119299243137168Rat
11479482LOC108349475uncharacterized LOC1083494751243163002243169001Rat
621177Scd2stearoyl-Coenzyme A desaturase 21243169171243182231Rat
1563648Scd4stearoyl-coenzyme A desaturase 41243203433243216007Rat
621176Scdstearoyl-CoA desaturase1243269745243282878Rat
41245632LOC1201002175S ribosomal RNA1243285618243285736Rat
1307644Wnt8bWnt family member 8B1243354145243376000Rat
1598329Sec31bSEC31 homolog B, COPII coat complex component1243376283243404557Rat
1309129Ndufb8NADH:ubiquinone oxidoreductase subunit B81243408656243413715Rat
1308281Hif1anhypoxia inducible factor 1 subunit alpha inhibitor1243419175243440464Rat
7716077LOC102548668uncharacterized LOC1025486681243600353243602047Rat
1305568Pax2paired box 21243616509243697454Rat
2323148Tmem258-ps1transmembrane protein 258, pseudogene 11243721747243722003Rat
41120962LOC120100041uncharacterized LOC1201000411243736689243757175Rat
41053224LOC1201001105S ribosomal RNA1243761050243761168Rat
1560300Slf2SMC5-SMC6 complex localization factor 21243782786243845418Rat
41232861Rnu6-588RNA, U6 small nuclear 5881243798008243798114Rat
1310436Sema4gsemaphorin 4G1243849979243865343Rat
1307593Mrpl43mitochondrial ribosomal protein L431243866848243868285Rat
1307884Twnktwinkle mtDNA helicase1243867568243874802Rat
1359249Lzts2leucine zipper tumor suppressor 21243876665243888489Rat
1309882Pdzd7PDZ domain containing 71243888295243907778Rat
620716Sfxn3sideroflexin 31243907958243917065Rat
1310698Kazald1Kazal-type serine peptidase inhibitor domain 11243939596243943060Rat
1563655Tlx1T-cell leukemia, homeobox 11244005057244011318Rat
7597255LOC102548928uncharacterized LOC1025489281244051587244059818Rat
41171415LOC120098088uncharacterized LOC1200980881244080235244081188Rat
1564197Lbx1ladybird homeobox 11244083873244085690Rat
41111602LOC120100042uncharacterized LOC1201000421244086089244094622Rat
6490543LOC100911827uncharacterized LOC1009118271244182591244190639Rat
1359721Btrcbeta-transducin repeat containing E3 ubiquitin protein ligase1244210299244380126Rat
11497425LOC108349487uncharacterized LOC1083494871244389243244391611Rat
1308053PollDNA polymerase lambda1244400202244408762Rat
1307648Dpcddeleted in primary ciliary dyskinesia1244408766244426891Rat
1306518Fbxw4F-box and WD repeat domain containing 41244426892244514188Rat
7573700LOC102550220uncharacterized LOC1025502201244566167244579290Rat
70891Fgf8fibroblast growth factor 81244584477244590578Rat
1565542Npm3nucleophosmin/nucleoplasmin, 31244595638244597623Rat
621077OgaO-GlcNAcase1244598285244633835Rat
70887Kcnip2potassium voltage-gated channel interacting protein 21244641147244664939Rat
9299787Armh3armadillo-like helical domain containing 31244666250244848688Rat
631341Hps6HPS6, biogenesis of lysosomal organelles complex 2 subunit 31244853256244855865Rat
1310359Ldb1LIM domain binding 11244864168244890007Rat
41241292Ldb1lLIM domain binding 1 like1244889862244894678Rat
1309688Pprc1PPARG related coactivator 11244901985244918587Rat
621578Nolc1nucleolar and coiled-body phosphoprotein 11244921275244932089Rat
1307263Elovl3ELOVL fatty acid elongase 31244997287245001115Rat
3332Pitx3paired-like homeodomain 31245001106245013881Rat
2324796Atp5mg-ps12ATP synthase membrane subunit g, pseudogene 121245016801245017235Rat
1307160Gbf1golgi brefeldin A resistant guanine nucleotide exchange factor 11245018535245147052Rat
41399231LOC120100126U6 spliceosomal RNA1245039585245039691Rat
41117311Pin4-ps7peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 71245095501245106619Rat
41257533Rpl19-ps3ribosomal protein L19, pseudogene 31245147194245150994Rat
1307189Nfkb2nuclear factor kappa B subunit 21245164586245173225Rat
620297Psdpleckstrin and Sec7 domain containing1245173279245188681Rat
1306444Fbxl15F-box and leucine-rich repeat protein 151245189732245191973Rat
1308096Cuedc2CUE domain containing 21245192057245200594Rat
2314885Mir146bmicroRNA 146b1245203438245203525Rat
40933704C1h10orf95similar to human chromosome 10 open reading frame 951245210228245212080Rat
1309313Mfsd13amajor facilitator superfamily domain containing 13A1245216610245236314Rat
1307025Actr1aactin related protein 1A1245237821245256618Rat
1559462SufuSUFU negative regulator of hedgehog signaling1245257725245355576Rat
1585223Trim8tripartite motif-containing 81245369632245384513Rat
69327Arl3ADP ribosylation factor like GTPase 31245400659245446673Rat
40973998Trnah-augtransfer RNA histidin (anticodon AUG)1245429192245429266Rat
1306131Sfxn2sideroflexin 21245447014245459312Rat
1305793Wbp1lWW domain binding protein 1-like1245472292245528627Rat
41278540LOC120100047uncharacterized LOC1201000471245513183245514320Rat
2456Cyp17a1cytochrome P450, family 17, subfamily a, polypeptide 11245535462245543148Rat
1311783Borcs7BLOC-1 related complex subunit 71245564347245578182Rat
621325As3mtarsenite methyltransferase1245595939245628921Rat
1308162Cnnm2cyclin and CBS domain divalent metal cation transport mediator 21245643682245769542Rat
2323387Nt5c25'-nucleotidase, cytosolic II1245770993245896925Rat
11360257Trnar-ucu2transfer RNA arginine (anticodon UCU) 21245884622245884694Rat
2911Inainternexin neuronal intermediate filament protein, alpha1245896775245908330Rat
1306904Pcgf6polycomb group ring finger 61245925354245944964Rat
1311332Taf5TATA-box binding protein associated factor 51245958428245973914Rat
631426Atp5mkATP synthase membrane subunit K1245973910245980702Rat
1304933Pdcd11programmed cell death 111245980840246021999Rat
1308276Calhm2calcium homeostasis modulator family member 21246022324246028050Rat
1564891Calhm1calcium homeostasis modulator 11246030269246032988Rat
1560215Calhm3calcium homeostasis modulator 31246043258246048259Rat
1307021Neurl1neuralized E3 ubiquitin protein ligase 11246066830246152890Rat
1311185Sh3pxd2aSH3 and PX domains 2A1246153660246359806Rat
7669753LOC102552122uncharacterized LOC1025521221246184403246206661Rat
41393987Trnap-agg27transfer RNA proline (anticodon AGG) 271246363658246363732Rat
1305637Stn1STN1 subunit of CST complex1246391311246429844Rat
41137166LOC120100048uncharacterized LOC1201000481246401890246417045Rat
41091111LOC120100049uncharacterized LOC1201000491246439526246443224Rat
11396518LOC10834979440S ribosomal protein S8 pseudogene1246463433246465508Rat
3780SlkSTE20-like kinase1246473712246529643Rat
1311130Col17a1collagen type XVII alpha 1 chain1246530589246577559Rat
41268803LOC120100451small nucleolar RNA SNORA171246597266246597365Rat
41256121Rnu6-982RNA, U6 small nuclear 9821246601434246601537Rat
1305481Sfr1SWI5-dependent homologous recombination repair protein 11246619235246623250Rat
1560545Cfap43cilia and flagella associated protein 431246625259246712438Rat
70952Gsto1glutathione S-transferase omega 11246721089246731228Rat
1310764Gsto2glutathione S-transferase omega 21246731314246757592Rat
6488464Itpripinositol 1,4,5-trisphosphate receptor interacting protein1246762804246786379Rat
41387482LOC120100050uncharacterized LOC1201000501246782447246786746Rat
4888614Mir3584microRNA 35841246786249246786329Rat
7656374Cfap58cilia and flagella associated protein 581246802691246911363Rat
11516969Rpl21l7ribosomal protein L21 like 71246824363246825515Rat
11514905Trnak-cuu1transfer RNA lysine (anticodon CUU) 11247030084247030156Rat
1310974Sorcs3sortilin-related VPS10 domain containing receptor 31247099178247734027Rat
41361186LOC120100051uncharacterized LOC1201000511247131099247134646Rat
11496109Trnak-cuu2transfer RNA lysine (anticodon CUU) 21247319517247319589Rat
41068081LOC120100433small nucleolar RNA SNORA171247357347247357477Rat
41147363LOC120100052uncharacterized LOC1201000521247854390247857655Rat
41295772LOC120100408small nucleolar RNA SNORA481247861966247862109Rat
7531295LOC102553570uncharacterized LOC1025535701248166322248202658Rat
41196429LOC120100053uncharacterized LOC1201000531248469246248525675Rat
1561154Hspa8-ps17heat shock protein family A (Hsp70) member 8, pseudogene 171248670456248672399Rat
2322523Timm23-ps4translocase of inner mitochondrial membrane 23, pseudogene 41249007955249008573Rat
7579721LOC102554215uncharacterized LOC1025542151249022403249054065Rat
1305910Sorcs1sortilin-related VPS10 domain containing receptor 11249080662249594520Rat
41122474LOC120097667uncharacterized LOC1200976671249571775249580832Rat
7651693LOC102554335uncharacterized LOC1025543351249604941249670248Rat
40971877LOC120100146U6 spliceosomal RNA1250185783250185889Rat
1596933Cwf19l2-ps1CWF19 like cell cycle control factor 2, pseudogene 11250318679250320350Rat
41095611LOC120100054uncharacterized LOC1201000541250331260250352395Rat
2321699Zc3h15-ps1zinc finger CCCH-type containing 15, pseudogene 11250612247250613733Rat
1587125LOC679558hypothetical protein LOC6795581250821292250822426Rat
1587108Nup133-ps1nucleoporin 133, pseudogene 11251080269251083455Rat
2915Ins1insulin 11251244973251245540Rat
1332901Olr385olfactory receptor 3851251304771251307962Rat
1566300Rccd1-ps1RCC1 domain containing 1, pseudogene 11251725706251730317Rat
1561333Rpl8l1ribosomal protein L8 like 11251920614251921456Rat
621274Xpnpep1X-prolyl aminopeptidase 11252001366252052077Rat
7749911Mrpl2-ps1mitochondrial ribosomal protein L2, pseudogene 11252045464252046435Rat
11415116LOC108349045uncharacterized LOC1083490451252109375252149429Rat
2043Add3adducin 31252147341252255126Rat
3128Mxi1MAX interactor 1, dimerization protein1252323915252383682Rat
11517691LOC108349710uncharacterized LOC1083497101252334236252340443Rat
1309151Smndc1survival motor neuron domain containing 11252389675252400749Rat
9333280LOC103691375uncharacterized LOC1036913751252424747252428991Rat
41351795LOC120100378U2 spliceosomal RNA1252426043252426198Rat
7499870LOC102551352uncharacterized LOC1025513521252461331252463112Rat
41311433LOC120100056uncharacterized LOC1201000561252464379252469037Rat
620854Dusp5dual specificity phosphatase 51252538408252555320Rat
2321899Rps12l2ribosomal protein S12-like 21252597641252598162Rat
62006Smc3structural maintenance of chromosomes 31252601422252644522Rat
1307427Rbm20RNA binding motif protein 201252683760252907465Rat
41301989LOC120100058uncharacterized LOC1201000581252872519252877817Rat
620816Pdcd4programmed cell death 41252921342252944278Rat
6498801Bbip1BBSome interacting protein 11252943589252959512Rat
1308146Shoc2SHOC2 leucine-rich repeat scaffold protein1252958939253048820Rat
41188207LOC120100368small nucleolar RNA SNORA201252970938252971065Rat
2056Adra2aadrenoceptor alpha 2A1253061480253064280Rat
41268475LOC120100059uncharacterized LOC1201000591253197596253204527Rat
7726077LOC102552097uncharacterized LOC1025520971253539545253560364Rat
41013695Cenpt-ps1centromere protein T, pseudogene 11253768789253770732Rat
41317161LOC120098089uncharacterized LOC1200980891254003917254009248Rat
41252668LOC120100060uncharacterized LOC1201000601254013915254016089Rat
7724630LOC102553657uncharacterized LOC1025536571254033150254040657Rat
61847Gpamglycerol-3-phosphate acyltransferase, mitochondrial1254106323254170755Rat
41394270LOC120098625extensin-like1254155889254157007Rat
1305835Tectbtectorin beta1254221621254236669Rat
621853Gucy2gguanylate cyclase 2G1254237778254280277Rat
69402Acsl5acyl-CoA synthetase long-chain family member 51254289513254336608Rat
1304657Zdhhc6zinc finger DHHC-type palmitoyltransferase 61254335472254356141Rat
621490Vti1avesicle transport through interaction with t-SNAREs 1A1254356343254661854Rat
7536522LOC102554304uncharacterized LOC1025543041254627579254634331Rat
41026487Trnav-aac8transfer RNA valine (anticodon AAC) 81254740030254740104Rat
1583621Tcf7l2transcription factor 7 like 21254785956254978967Rat
41149020LOC120100061uncharacterized LOC1201000611254786514254787294Rat
41158907LOC120100062uncharacterized LOC1201000621255013488255019258Rat
41219028LOC120098090uncharacterized LOC1200980901255073423255091957Rat
9414347LOC103691380uncharacterized LOC1036913801255148172255204240Rat
40981878LOC120100063uncharacterized LOC1201000631255235859255269252Rat
41305682LOC120100434small nucleolar RNA SNORA171255305326255305444Rat
1302979Habp2hyaluronan binding protein 21255315870255350161Rat
1306731Nrapnebulin-related anchoring protein1255350113255427704Rat
620944Casp7caspase 71255437438255476737Rat
1559884Plekhs1pleckstrin homology domain containing S11255495634255525353Rat
9261776LOC103691381uncharacterized LOC1036913811255556923255559966Rat
1590633Rpl19-ps2ribosomal protein L19, pseudogene 21255566283255566849Rat
41293690LOC120100457small nucleolar RNA SNORA171255568950255569042Rat
1306156Dclre1aDNA cross-link repair 1A1255569911255589815Rat
1307348Nhlrc2NHL repeat containing 21255589743255648904Rat
7525733LOC102547573uncharacterized LOC1025475731255694149255706423Rat
41207760LOC120100064uncharacterized LOC1201000641255706500255711236Rat
2059Adrb1adrenoceptor beta 11255771962255774973Rat
7702517LOC102547814uncharacterized LOC1025478141255819667255823784Rat
1307158Ccdc186coiled-coil domain containing 1861255831663255871954Rat
1306140Tdrd1tudor domain containing 11255871939255919222Rat
1562000Vwa2von Willebrand factor A domain containing 21255922263255963920Rat
1310668Afap1l2actin filament associated protein 1-like 21255964238256060828Rat
1565768Ablim1actin-binding LIM protein 11256083747256372075Rat
41351922LOC120100065uncharacterized LOC1201000651256172493256186233Rat
41058777LOC120100066uncharacterized LOC1201000661256380079256388222Rat
1306116Fhip2aFHF complex subunit HOOK interacting protein 2A1256417533256444109Rat
7489025Mir6316microRNA 63161256501216256501316Rat
1308502Trub1TruB pseudouridine synthase family member 11256513418256554549Rat
7554379LOC102551125uncharacterized LOC1025511251256568371256577944Rat
1563485Atrnl1attractin like 11256670976257219291Rat
41071757Rps19-ps14ribosomal protein S19, pseudogene 141256991846256992391Rat
41120400LOC120097692uncharacterized LOC1200976921257220491257242191Rat
11499189LOC108349828uncharacterized LOC1083498281257234383257241269Rat
2681Gfra1GDNF family receptor alpha 11257315682257552004Rat
7573768LOC102556644uncharacterized LOC1025566441257337682257361907Rat
40936949Trnap-ggg2transfer RNA proline (anticodon GGG) 21257560546257560626Rat
41170528Trnap-ggg9transfer RNA proline (anticodon GGG) 91257579412257579492Rat
1359412Ccdc172coiled-coil domain containing 1721257629188257682373Rat
3360Pnlippancreatic lipase1257774012257811656Rat
620792Pnliprp1pancreatic lipase-related protein 11257867885257883514Rat
620793Pnliprp2pancreatic lipase related protein 21257897766257916434Rat
1584737Spmip5sperm microtubule inner protein 51257926555257934873Rat
1305531Hspa12aheat shock protein family A (Hsp70) member 12A1257935642258096602Rat
1308333Eno4enolase 41258096406258119811Rat
1311558Shtn1shootin 11258121966258225861Rat
41209045LOC120100404small nucleolar RNA SNORA481258235453258235594Rat
41323688LOC120100067uncharacterized LOC1201000671258295119258307242Rat
621132Vax1ventral anterior homeobox 11258324571258342396Rat
1303091Kcnk18potassium two pore domain channel subfamily K member 181258374671258388945Rat
3694Slc18a2solute carrier family 18 member A21258413748258449143Rat
1308622Pdzd8PDZ domain containing 81258449218258506828Rat
41352325LOC120100068uncharacterized LOC1201000681258558565258613522Rat
9281507Emx2osEmx2 opposite strand/antisense RNA1258569637258626810Rat
1564797Emx2empty spiracles homeobox 21258626584258633594Rat
11403659LOC108349711uncharacterized LOC1083497111258646463258654480Rat
1591901Rps9-ps2ribosomal protein S9, pseudogene 21258746656258747237Rat
41385946LOC120100142U6 spliceosomal RNA1258809907258810012Rat
1308538Rab11fip2RAB11 family interacting protein 21258950535259094555Rat
7609551LOC102556108uncharacterized LOC1025561081259283831259291744Rat
41054981Ndufab1-ps1NADH:ubiquinone oxidoreductase subunit AB1, pseudogene 11259294672259295761Rat
1305500Fam204afamily with sequence similarity 204, member A1259328551259366726Rat
41250872Trnap-agg88transfer RNA proline (anticodon AGG) 881259501726259501804Rat
71037Prlhrprolactin releasing hormone receptor1259606704259608391Rat
1308127Cacul1CDK2-associated, cullin domain 11259666335259726249Rat
2323620Snu13-ps5small nuclear ribonucleoprotein 13, pseudogene 51259716056259716928Rat
11433684LOC108349715uncharacterized LOC1083497151259740912259748207Rat
1308194Nanos1nanos C2HC-type zinc finger 11259897663259901561Rat
1307269Eif3aeukaryotic translation initiation factor 3, subunit A1259902767259932976Rat
41358313LOC120093054small nucleolar RNA SNORA191259917206259917337Rat
1308326Dennd10DENN domain containing 101259950955259974459Rat
1306088Sfxn4sideroflexin 41259976480259998778Rat
620040Prdx3peroxiredoxin 31260001642260014064Rat
61985Grk5G protein-coupled receptor kinase 51260028269260223699Rat
41231749LOC120100371small nucleolar RNA SNORA441260136759260136887Rat
7570552Zfp950zinc finger protein 9501260248231260265211Rat
41267676Rnu6-28RNA, U6 small nuclear 281260249584260249690Rat
7528461Zfp933l1zinc finger protein 9331260293716260306040Rat
1563099Gcshl1glycine cleavage system protein H like11260311346260312097Rat
1565045Ces2icarboxylesterase 2I1260321595260329110Rat
1564578Ces2c-ps1carboxylesterase 2C, pseudogene 11260343090260350642Rat
621510Ces2ccarboxylesterase 2C1260391190260398757Rat
41324348Ces2e-ps1carboxylesterase 2E, pseudogene 11260422075260434417Rat
6503025Ybx1-ps4Y box binding protein 1, pseudogene 41260442452260455955Rat
40972971Ybx1-ps16Y box binding protein 1, pseudogene 161260452111260455956Rat
41244292Ybx1-ps14Y box binding protein 1, pseudogene 141260471423260475268Rat
7652013Ybx1-ps12Y box binding protein 1, pseudogene 121260481081260494581Rat
41299975Ybx1-ps17Y box binding protein 1, pseudogene 171260490737260494592Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10097D1Smu21291253050519253050648Ratregion
10105D1Smu11691255785337255785506Ratregion
10432D1Mgh243001245542075245542378Ratregion
10445D1Wox251981238755477238755659Ratregion
10446D1Mgh291221238755490238755596Ratregion
10805D1Mgh131491245907761245907899Ratregion
33830D1Mit321491244113147244113296Ratregion
33844D1Mit141041258625162258625266Ratregion
34194D1Mgh141491256448513256448636Ratregion
34232D1Mgh151501254773191254773351Ratregion
34517D1Mgh321091241799011241799120Ratregion
33569D1Mit311771245480298245480477Ratregion
36169D1Rat891711257976324257976495Ratregion
36358D1Mit351231260274101260274224Ratregion
37506D1Rat1512461244863660244863900Ratregion
35266D1Rat791251240698709240698822Ratregion
35457D1Rat901481259647732259647894Ratregion
36828D1Rat851601251790438251790570Ratregion
36874D1Rat821261243747836243747962Ratregion
37030D14Rat31591242824821242824860Ratregion
37030D14Rat31591242824825242824866Ratregion
37896D1Rat1261501255535135255535265Ratregion
37956D1Rat1952101257280117257280333Ratregion
36524D1Rat871671254527799254527966Ratregion
36703D1Rat861461252085048252085212Ratregion
34935D1Rat831441245700955245701099Ratregion
34969D1Rat781681240781320240781488Ratregion
34971D1Rat811671243914732243914901Ratregion
35655D1Rat841661252279996252280168Ratregion
35671D1Rat801211241499713241499846Ratregion
38024D1Rat2351241241584888241585028Ratregion
38078D1Rat1422381240829765240830002Ratregion
40530D1Rat3051261241154744241154866Ratregion
40578D1Rat3861711258534812258534988Ratregion
38618D1Rat1661391248393012248393157Ratregion
39264D1Rat1941241240147537240147657Ratregion
39420D1Rat3112481256516557256516797Ratregion
42090D1Arb462901245907716245908012Ratregion
42092D1Arb471811245542203245542390Ratregion
41452D1Rat3091641244192393244192561Ratregion
42537D1Rat4482001239582202239582406Ratregion
42538D1Rat4492431240444757240444980Ratregion
42539D1Rat4502001241515752241515957Ratregion
42541D1Rat4531321243914732243914864Ratregion
42542D1Rat3742001243914737243914935Ratregion
42543D1Rat3751171243914747243914864Ratregion
42544D1Rat4542391246190345246190573Ratregion
42546D1Rat4772051250850662250850846Ratregion
42547D1Rat4562051254304565254304772Ratregion
42548D1Rat4572221258069487258069719Ratregion
42550D1Rat4592081260122597260122809Ratregion
42551D1Rat4621491254773192254773351Ratregion
42553D1Rat4612371258843780258843987Ratregion
40792D1Rat3082031245462713245463166Ratregion
40792D1Rat3082031245462965245463166Ratregion
40810D13Rat1092021255288079255288289Ratregion
40904D19Rat862131260432881260433115Ratregion
41060D1Rat3071201246062119246062233Ratregion
41080D1Rat3122001258648879258649079Ratregion
41822D1Rat4522061246126055246126259Ratregion
43430D1Got2372171240318000240318215Ratregion
43431D1Got2382111243481139243481352Ratregion
43435D1Wox241111237976134237976247Ratregion
43436D1Got2402061243981896243982102Ratregion
43437D1Got2322721240317869240318141Ratregion
43438D1Got2822341237388773237389007Ratregion
43442D1Got2391181246354238246354356Ratregion
43443D1Got2471221247683763247683883Ratregion
43444D1Got2491491247115893247116042Ratregion
43447D1Got2502791252080660252080937Ratregion
43448D1Got2511661253439653253439819Ratregion
43449D1Got2531431252223685252223828Ratregion
43450D1Got2522021252422730252422929Ratregion
43451D1Got2571661253962015253962181Ratregion
43454D1Got2541831257090986257091168Ratregion
43455D1Got2712731259183872259184144Ratregion
43456D1Got2562761254863497254863775Ratregion
43457D1Got2552271256778553256778780Ratregion
43458D1Got2581501259385459259385609Ratregion
60226D1Got2341621244349015244349177Ratregion
60227D1Got2412951240558520240558815Ratregion
60228D1Got2421561248835428248835584Ratregion
60229D1Got2432961249464806249465102Ratregion
60230D1Got2442191249000135249000354Ratregion
60242D1Got2811401239096230239096370Ratregion
70473D1mD19Mit111501241196247241196397Ratregion
629594D1Hmgc11581243559115243559273Ratregion
629595D1Hmgc21771247043567247043744Ratregion
629595D1Hmgc21771247043567247043744Ratregion
629596D1Hmgc31541247779589247779743Ratregion
66406D1Mco51541240460068240460245Ratregion
66590D1Mco26911238755483238755574Ratregion
67781D1Uwm91641256723924256724090Ratregion
67792D1Uwm102081259900306259900476Ratregion
1576370D1Ztm22891242486539242486828Ratregion
1576371D1Ztm52981251258770251259068Ratregion
1576377D1Ztm41651251246901251247066Ratregion
1576379D1Ztm62381251260995251261233Ratregion
1576386D1Ztm11791242490943242491122Ratregion
1576390D1Ztm32791251246810251247089Ratregion
1630241D1M19Mit111501241196247241196397Ratregion
1631829D1Wox461321245544381245544513Ratregion
1632205D1Got3691151253527858253527968Ratregion
1600314D1Swe62821249556757249557041Ratregion
1600318D1Swe22041247865838247866042Ratregion
1600320D1Swe42011248746112248746313Ratregion
1600322D1Swe32581248192346248192604Ratregion
1600324D1Swe82101252645447252645657Ratregion
1600326D1Swe72061252398190252398396Ratregion
1600328D1Swe52941249396204249396498Ratregion
1627934D1Got3552251258216017258216242Ratregion
1628087D1Got3502331243177527243177760Ratregion
1629026D20Wox19961254710586254710643Ratregion
1639595D1Got4341801244349016244349196Ratregion
1641160D1Got4412591245826871245827129Ratregion
1641442D1Got3512151246809750246809965Ratregion
1641588D1Cebr42891256573653256573942Ratregion
1633047D1Wox852111236760674236760885Ratregion
1633133D1Got3522301251223729251223961Ratregion
1633380D1Got4081891248837988248838177Ratregion
1639829D1Got3531731259472312259472485Ratregion
1638073D1Wox472171236762334236762551Ratregion
7206038Hif1an1351243419727243419862Ratregion
7192160Gfra101257549390257550527Ratregion
7192177Pitx32111245001811245002022Ratregion
7192876Ins21841251245333251245517Ratregion
7193086AA8931441061256764507256764613Ratregion
7192481Ins13121251245167251245479Ratregion
5035805PMC19453P1881243649921243650009Ratregion
5035833PMC21231P13011251245156251245457Ratregion
5035835PMC21334P12291251245210251245439Ratregion
7387284rs81580001245762787245762787Ratregion
5036045Scd1761243112004243112080Ratregion
5036045Scd1761243273354243273430Ratregion
5036159D11Bir21381243621084243621222Ratregion
5036197D19Jpk11441239371764239371908Ratregion
5038848RH1273671841240957836240958020Ratregion
5038896RH1273951891260001900260002089Ratregion
5038902RH1273981801252383464252383644Ratregion
5038910RH1274031821242605687242605869Ratregion
7206612Kcnip25031244642822244644181Ratregion
7206612Kcnip25031244642822244644181Ratregion
7206618Pitx313381245001507245002845Ratregion
7206644Tlx17331244010468244011201Ratregion
7206680UniSTS:5475074601244589179244589639Ratregion
5036374Ins23001251245160251245460Ratregion
5039298RH1276261911242921330242921521Ratregion
5039060RH1274892001256443804256444004Ratregion
5036803AU0492561871253702051253702238Ratregion
5037175RH989191291258037657258037786Ratregion
5035570GOT11461242361857242362003Ratregion
5031268PMC123023P17071251245183251245392Ratregion
5025944RH1302951881242635621242635809Ratregion
5026076RH1308171871236556987236557174Ratregion
5026076RH1308171871236556987236557174Ratregion
5028609AI4264931231239744561239744684Ratregion
5028611AF005772951245001141245001236Ratregion
5028669RH802852181243695192243695410Ratregion
5026110RH1309501801241551256241551436Ratregion
5026186RH1312471831258061686258061869Ratregion
5026210RH1313362141257916217257916431Ratregion
5026236RH1314372041259976525259976729Ratregion
5028837RH1425182111240956474240956685Ratregion
5031538AU0479992931249246112249246400Ratregion
5031654AU0475912921243256623243256915Ratregion
5034305Pitx32421245002596245002838Ratregion
5026400RH1320602171239552003239552220Ratregion
5029001RH1431371581245099693245099851Ratregion
5031768AU0472081691238810171238810342Ratregion
5034514BI2806691501240930288240930438Ratregion
5034662BF3908301851252334266252334451Ratregion
5029349RH1444581841256412438256412622Ratregion
5032036AU0289521421239811755239811792Ratregion
5034780AA8931442031256764408256764613Ratregion
5026840RH1337312031252943433252944252Ratregion
5029437Tcf7l22741254976986254977260Ratregion
5029484D1Bda632221244584670244584892Ratregion
5032319AI507908881243865092243865180Ratregion
5035084WIAF-16761371255355475255355612Ratregion
5026976RH1342512171245907905245908122Ratregion
5026984RH1342831981244916082244916280Ratregion
5027018RH1344192141254106538254106752Ratregion
5029585BE1013861651252393793252394491Ratregion
5029653BF3866521661256170210256170376Ratregion
5032441AI6061811201240405422240405542Ratregion
5035382BE1072511521246021754246021906Ratregion
5027115STS-F04204621254107658254107720Ratregion
5027179SHGC-1520962231248109316248109539Ratregion
5029755BF3936002291239757754239757983Ratregion
5029869BE0970271681246151903246152071Ratregion
5034842AI1764941481244598612244598760Ratregion
5034866AA9460891351242997808242997943Ratregion
5034948AI2295091851259290332259290517Ratregion
5027349AA9865401391251245377251245516Ratregion
5029921BI2919091261240256005240256131Ratregion
5029931BE0979811721240918700240918872Ratregion
5029965BF3882711911252385821252386012Ratregion
5032717RH1350421881245627576245627764Ratregion
5027545AW146116821240036079240036161Ratregion
5027547AI0357022641245146700245146964Ratregion
5027549AW5556411071257211591257211698Ratregion
5030101BI2924382071245000261245000468Ratregion
5030219AW532471991245400822245400921Ratregion
5032929RH1369991501243845227243845377Ratregion
5032943RH1370471531255569988255570141Ratregion
5027757RH946231811236798866236799047Ratregion
5030257BE0996641531257315730257315883Ratregion
5025226RH1274992171244390001244390219Ratregion
502782502.MMHAP26FLA2.seq2131251821549251821771Ratregion
502784509.MMHAP88FRC9.seq2061241496461241496667Ratregion
502787118.MMHAP22FRF9.seq1471255257842255257989Ratregion
5033269RH1382102171242350960242351177Ratregion
5025304RH1278051881242889376242889564Ratregion
5028005M262701421243179211243179353Ratregion
5033397RH1386861361259974256259974392Ratregion
5033405RH1387141511254969861254970012Ratregion
5025574RH1288491541245146837245146991Ratregion
5030723BE1077601621243180034243180196Ratregion
5033605RH1394351891243867062243867251Ratregion
5025626RH1290411901252001395252001585Ratregion
5025626RH1290411901252001395252002084Ratregion
5030907BF4112741171256592203256592320Ratregion
5033829RH1402731931245577820245578013Ratregion
5031103BE1096821961259973238259973434Ratregion
5051933RH947421271258447675258447802Ratregion
5052031RH947993001251245137251245437Ratregion
5051136RH1344602061238705213238705419Ratregion
5053423RH1426401371254977123254977260Ratregion
5053569RH1427251321240034589240034721Ratregion
5056115RH1441911491245465522245465671Ratregion
5051603AW124847981245368706245368804Ratregion
5051605AW0486351291245763129245763258Ratregion
5051607AW558126851259054309259054394Ratregion
5053807RH1428621311249589323249589454Ratregion
5053993RH1429691641246158921246159085Ratregion
5053997RH1429711461255643663255643809Ratregion
5056767RH1445681501243000457243000607Ratregion
5051935RH947431701253050475253050643Ratregion
5051939RH947451581242357493242357651Ratregion
5054103RH1430321691245764264245764433Ratregion
5054327RH1431602201246501414246501634Ratregion
5057217D1Bda654341258447817258448251Ratregion
5055263RH1437001341256422523256422657Ratregion
5059426AW5307051571249577642249577799Ratregion
5057582BE0956342051243443177243443382Ratregion
5057654BF3924201481244184054244184204Ratregion
5055509RH1438421411256060567256060708Ratregion
5055703RH1439541091254432108254432217Ratregion
5058574AI5492141901255964325255964515Ratregion
5056203RH1442432921253099772253100064Ratregion
5056245RH1442672091249224379249224588Ratregion
5056327RH1443141111252944762252944873Ratregion
5058830AA8993092031241007030241007233Ratregion
5056931RH1446631551254045849254046004Ratregion
5052361X846511991259908603259908802Ratregion
5056809RH1445931661256130175256130341Ratregion
5057215D1Bda642961245001804245002494Ratregion
5057219D1Bda661391259606801259606940Ratregion
5055337RH1437431261244763796244763922Ratregion
5055365RH1437591911236927295236927486Ratregion
5055407RH1437832371243181476243181714Ratregion
5055427RH1437951571243942507243942664Ratregion
5055481RH1438261121252324057252324169Ratregion
5052705RH1422191931245001209245001401Ratregion
5058956BF3872991801246753680246753860Ratregion
5059752BE1031461741245098970245099144Ratregion
5059800BE1032161661241176348241176514Ratregion
5059844BF3880331741256200132256200306Ratregion
5055641RH1439181821252683081252683263Ratregion
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5135430D1Hmgc161941246983819246984013Ratregion
5135430D1Hmgc161941246983819246984013Ratregion
5503310UniSTS:2379412801240928715240928995Ratregion
5502932Sfrp511631241007573241008736Ratregion
5503314UniSTS:2379612781244910741244911019Ratregion
5503316UniSTS:2379881321259903266259903398Ratregion
5503809UniSTS:4713329901243371293243372283Ratregion
5503918Adrb15221255772489255773011Ratregion
5503937D19Mgc75901258452910258453500Ratregion
5503716SEPHS1_92888341236308327236309637Ratregion
5503939D19Mgc54641259054366259054830Ratregion
5503982UniSTS:2570933491245539047245539551Ratregion
5503581UniSTS:4646621171245537627245537744Ratregion
5503935UniSTS:2568273171245001765245002476Ratregion
5504568PMC305695P22611242478215242478476Ratregion
5527120D1Hmgc191491249583745249583894Ratregion
5527274D1Hmgc201301246355367246355497Ratregion
5527390D1Hmgc211931248138231248138424Ratregion
5504216RH799411861256991960256992146Ratregion
5504918Casp7941255476168255476262Ratregion
5505058Fgf82621244589179244589441Ratregion
5505490GDB:602855201251517809251519113Ratregion
5504895ha310315911259714867259716458Ratregion
5505895UniSTS:4960091031260212603260212706Ratregion
5505364Wnt8b5551243373286243373841Ratregion
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5506043UniSTS:4982363771244584536244584913Ratregion
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5506739G450201971242593354242593553Ratregion
5506769G452591881244842146244842334Ratregion
5507179UniSTS:2250431901245151303245151493Ratregion
5499677MARC_7523-7524:992008440:101245761912245762575Ratregion
5499631MARC_4325-4326:991938466:11231258037656258037779Ratregion
5501730UniSTS:2670032181251245261251245479Ratregion
5501766MARC_11963-11964:1003864532:101245191003245191810Ratregion
5500252AW0499001221245128210245128555Ratregion
550015917.MMHAP36FRF8.seq11741252666801252667975Ratregion
5500308GDB:1798751001251880456251880556Ratregion
5501019PMC123023P33321251245148251245480Ratregion
5501602RH758031071243843563243843670Ratregion
5501657PMC24644P61881251245286251245474Ratregion
5506579UniSTS:2778901311243373357243373488Ratregion
5501976MARC_21710-21711:1036508963:101243386465243387081Ratregion
5502006MARC_23511-23512:1027359213:11661240735869240736596Ratregion
5502228Ins13021251245159251245461Ratregion
5502678Acsl5741254331296254331569Ratregion
5502977Gfra101257549390257550528Ratregion
5502399RH1247151891245528414245528603Ratregion
5502403RH1247432851239549937239550222Ratregion
152025234rs817508301242907031242907031Ratregion
Position Markers

Peak: (D1Mit14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21258,625,162 - 258,625,266 (+)MAPPER
Rnor_6.01280,632,517 - 280,632,620NCBI
Rnor_5.01287,992,227 - 287,992,330UniSTS
RGSC_v3.41266,002,835 - 266,002,939RGD
RGSC_v3.41266,002,836 - 266,002,939UniSTS
RGSC_v3.11266,213,881 - 266,213,984RGD
Celera1254,274,522 - 254,274,625UniSTS
RH 3.4 Map11706.6UniSTS
RH 3.4 Map11706.6RGD
RH 2.0 Map11324.4999RGD
FHH x ACI Map1132.1799RGD
Cytogenetic Map1q55UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
1600399Niddm65Non-insulin dependent diabetes mellitus QTL 650.004blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1248746112249254376Rat
1600384Niddm66Non-insulin dependent diabetes mellitus QTL 660.000005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1252645447253439819Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1247683763248192604Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
737975Bw122Body weight QTL 1229.110.005body mass (VT:0001259)body weight (CMO:0000012)1258843780260122809Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
71112Bw115Body weight QTL 11560.0001body mass (VT:0001259)body weight (CMO:0000012)1259647732260522016Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210702053240947965Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1223262787260522016Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1245907761257976495Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl5


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-27 Scl5  Serum cholesterol level QTL 5  Stl3  Serum triglyceride level QTL 3  Data merged from RGD:631644 737654 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general LOD score of 1.9 was observed for triglycerides which was measured in an automatic analyzer using blood samples obtained by ophthalamic venous plexus puncture in 12 week old males 619667