Sorbs1 (sorbin and SH3 domain containing 1) - Rat Genome Database

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Gene: Sorbs1 (sorbin and SH3 domain containing 1) Rattus norvegicus
Analyze
Symbol: Sorbs1
Name: sorbin and SH3 domain containing 1
RGD ID: 1586598
Description: Exhibits insulin receptor binding activity and ubiquitin protein ligase binding activity. Involved in several processes, including response to activity; response to insulin; and response to monosodium L-glutamate. Localizes to insulin receptor complex. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human SORBS1 (sorbin and SH3 domain containing 1); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: MODEL
Also known as: CAP; Cbl associated protein; LOC686098; ponsin; SH3P12; similar to sorbin and SH3 domain containing 1 isoform 3; sorbin and SH3 domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01259,373,921 - 259,502,108 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01266,817,755 - 267,037,940 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,419,532 - 245,527,846 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1234,954,631 - 235,082,791 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (EXP,ISO)
clothianidin  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
glafenine  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
ozone  (EXP)
p-toluidine  (EXP)
paraquat  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (ISO)
quercetin  (EXP)
quercitrin  (ISO)
rac-lactic acid  (ISO)
rifampicin  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
testosterone enanthate  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9447983   PMID:9461600   PMID:10085297   PMID:11001060   PMID:11371513   PMID:11374898   PMID:12079283   PMID:15777793   PMID:19116150   PMID:26527617  


Genomics

Comparative Map Data
Sorbs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01259,373,921 - 259,502,108 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01266,817,755 - 267,037,940 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,419,532 - 245,527,846 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1234,954,631 - 235,082,791 (-)NCBICelera
Cytogenetic Map1q54NCBI
SORBS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1095,311,771 - 95,561,414 (-)EnsemblGRCh38hg38GRCh38
GRCh381095,311,773 - 95,561,439 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371097,071,530 - 97,321,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361097,061,520 - 97,311,161 (-)NCBINCBI36hg18NCBI36
Build 341097,061,520 - 97,311,125NCBI
Celera1090,812,720 - 91,062,378 (-)NCBI
Cytogenetic Map10q24.1NCBI
HuRef1090,698,450 - 90,948,671 (-)NCBIHuRef
CHM1_11097,353,333 - 97,602,955 (-)NCBICHM1_1
Sorbs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,280,484 - 40,502,399 (-)NCBIGRCm39mm39
GRCm39 Ensembl1940,283,197 - 40,502,223 (-)Ensembl
GRCm381940,292,040 - 40,513,955 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,294,753 - 40,513,779 (-)EnsemblGRCm38mm10GRCm38
MGSCv371940,366,530 - 40,588,302 (-)NCBIGRCm37mm9NCBIm37
MGSCv361940,345,351 - 40,567,123 (-)NCBImm8
Celera1941,096,960 - 41,318,133 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1934.25NCBI
Sorbs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555071,622,567 - 1,738,423 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555071,622,567 - 1,849,047 (-)NCBIChiLan1.0ChiLan1.0
SORBS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11095,429,538 - 95,608,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1095,432,824 - 95,559,022 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01091,922,292 - 92,172,339 (-)NCBIMhudiblu_PPA_v0panPan3
SORBS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,834,530 - 9,063,739 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl288,837,338 - 9,063,777 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha289,010,719 - 9,239,721 (-)NCBI
ROS_Cfam_1.0289,096,613 - 9,325,738 (-)NCBI
UMICH_Zoey_3.1288,813,634 - 9,042,380 (-)NCBI
UNSW_CanFamBas_1.0288,872,692 - 9,101,483 (-)NCBI
UU_Cfam_GSD_1.0289,016,118 - 9,245,183 (-)NCBI
Sorbs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721337,795,716 - 38,027,177 (+)NCBI
SpeTri2.0NW_0049366363,834,887 - 4,066,293 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SORBS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14106,895,763 - 107,137,767 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114106,895,764 - 107,137,469 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214116,528,972 - 116,771,224 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SORBS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1988,475,783 - 88,729,912 (-)NCBI
ChlSab1.1 Ensembl988,472,946 - 88,729,851 (-)Ensembl
Sorbs1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247376,646,837 - 6,875,408 (-)NCBI


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1202571665264802994Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1202571665264802994Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1208517798266948272Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1210360774264802828Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1215684498260684498Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1215711860260711860Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1215828102260828102Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1215828102260828102Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1215828102260828102Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1216324817261324817Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1216324817261324817Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1217054291281795785Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1221901238266901238Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1221901238266901238Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1221901238266901238Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1221901238266901238Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221901238266901238Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1222492538267492538Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1225689973270689973Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1225689973270689973Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1226706329271706329Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1230420627262031693Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1230420627282645769Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1233490105264802994Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1233663100273792054Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1235850810280850810Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1236265430281265430Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1236265430281265430Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1236795785281795785Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1236795785281795785Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1238824734279986079Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238830408266793958Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1238830534278228767Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1241482188281795785Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1242302911282763074Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1243272341282763074Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1244087148282763074Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1244148899282763074Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1244401175264636028Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1244401175264636028Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1244401175282365384Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1244401175282365384Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1244992467282365384Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1245529606282763074Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1249206242281795785Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1249607907266793958Rat
1581544Rf52Renal function QTL 520.05total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1252948438281795785Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1252955158280632620Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1255728828282763074Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1258132568282763074Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1258709726281795785Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1259295704282763074Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:74
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000021114, ENSRNOT00000021226, ENSRNOT00000021229, ENSRNOT00000021289, ENSRNOT00000021347
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 42 19 8 3 8 6 7 72 29 14 11 6
Low 1 1 38 33 16 33 2 4 2 6 27 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008760453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000021114   ⟹   ENSRNOP00000021114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000021226   ⟹   ENSRNOP00000021225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000021229   ⟹   ENSRNOP00000021229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000021289   ⟹   ENSRNOP00000021289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000021347   ⟹   ENSRNOP00000021347
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1259,376,933 - 259,484,569 (-)Ensembl
RefSeq Acc Id: XM_008760453   ⟹   XP_008758675
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,502,098 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760454   ⟹   XP_008758676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,502,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760455   ⟹   XP_008758677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,502,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760456   ⟹   XP_008758678
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,502,098 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774833   ⟹   XP_008773055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,082,781 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774834   ⟹   XP_008773056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,082,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774835   ⟹   XP_008773057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,082,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774836   ⟹   XP_008773058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,082,781 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589541   ⟹   XP_017445030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,082,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589544   ⟹   XP_017445033
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,024,695 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589546   ⟹   XP_017445035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,024,695 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589547   ⟹   XP_017445036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1234,954,631 - 235,024,695 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590354   ⟹   XP_017445843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,502,108 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590355   ⟹   XP_017445844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,444,012 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590356   ⟹   XP_017445845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,444,012 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590357   ⟹   XP_017445846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01259,373,921 - 259,444,012 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095037   ⟹   XP_038950965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,126 (-)NCBI
RefSeq Acc Id: XM_039095038   ⟹   XP_038950966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095040   ⟹   XP_038950968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,329,738 (-)NCBI
RefSeq Acc Id: XM_039095048   ⟹   XP_038950976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,045 (-)NCBI
RefSeq Acc Id: XM_039095057   ⟹   XP_038950985
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095058   ⟹   XP_038950986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095059   ⟹   XP_038950987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,045 (-)NCBI
RefSeq Acc Id: XM_039095062   ⟹   XP_038950990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095065   ⟹   XP_038950993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,275 (-)NCBI
RefSeq Acc Id: XM_039095066   ⟹   XP_038950994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095068   ⟹   XP_038950996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095072   ⟹   XP_038951000
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095076   ⟹   XP_038951004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,330,276 (-)NCBI
RefSeq Acc Id: XM_039095080   ⟹   XP_038951008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,101 (-)NCBI
RefSeq Acc Id: XM_039095084   ⟹   XP_038951012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,094 (-)NCBI
RefSeq Acc Id: XM_039095089   ⟹   XP_038951017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,103 (-)NCBI
RefSeq Acc Id: XM_039095092   ⟹   XP_038951020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,096 (-)NCBI
RefSeq Acc Id: XM_039095095   ⟹   XP_038951023
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,100 (-)NCBI
RefSeq Acc Id: XM_039095099   ⟹   XP_038951027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,094 (-)NCBI
RefSeq Acc Id: XM_039095107   ⟹   XP_038951035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,090 (-)NCBI
RefSeq Acc Id: XM_039095115   ⟹   XP_038951043
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,091 (-)NCBI
RefSeq Acc Id: XM_039095125   ⟹   XP_038951053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,087 (-)NCBI
RefSeq Acc Id: XM_039095135   ⟹   XP_038951063
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,084 (-)NCBI
RefSeq Acc Id: XM_039095139   ⟹   XP_038951067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,178,719 (-)NCBI
RefSeq Acc Id: XM_039095140   ⟹   XP_038951068
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,017 (-)NCBI
RefSeq Acc Id: XM_039095147   ⟹   XP_038951075
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,013 (-)NCBI
RefSeq Acc Id: XM_039095154   ⟹   XP_038951082
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095156   ⟹   XP_038951084
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,012 (-)NCBI
RefSeq Acc Id: XM_039095158   ⟹   XP_038951086
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,013 (-)NCBI
RefSeq Acc Id: XM_039095161   ⟹   XP_038951089
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095169   ⟹   XP_038951097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095180   ⟹   XP_038951108
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,003 (-)NCBI
RefSeq Acc Id: XM_039095185   ⟹   XP_038951113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,017 (-)NCBI
RefSeq Acc Id: XM_039095188   ⟹   XP_038951116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,001 (-)NCBI
RefSeq Acc Id: XM_039095189   ⟹   XP_038951117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,013 (-)NCBI
RefSeq Acc Id: XM_039095194   ⟹   XP_038951122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,015 (-)NCBI
RefSeq Acc Id: XM_039095196   ⟹   XP_038951124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,235,986 (-)NCBI
RefSeq Acc Id: XM_039095206   ⟹   XP_038951134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,178,698 (-)NCBI
RefSeq Acc Id: XM_039095212   ⟹   XP_038951140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,014 (-)NCBI
RefSeq Acc Id: XM_039095216   ⟹   XP_038951144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,005 (-)NCBI
RefSeq Acc Id: XM_039095220   ⟹   XP_038951148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,235,977 (-)NCBI
RefSeq Acc Id: XM_039095221   ⟹   XP_038951149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,235,964 (-)NCBI
RefSeq Acc Id: XM_039095223   ⟹   XP_038951151
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,235,972 (-)NCBI
RefSeq Acc Id: XM_039095225   ⟹   XP_038951153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,017 (-)NCBI
RefSeq Acc Id: XM_039095226   ⟹   XP_038951154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095228   ⟹   XP_038951156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095229   ⟹   XP_038951157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,008 (-)NCBI
RefSeq Acc Id: XM_039095231   ⟹   XP_038951159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,007 (-)NCBI
RefSeq Acc Id: XM_039095232   ⟹   XP_038951160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,013 (-)NCBI
RefSeq Acc Id: XM_039095239   ⟹   XP_038951167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21239,107,882 - 239,236,017 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038950965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950985 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950996 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951000 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951004 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951008 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951012 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951017 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951027 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951043 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951053 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951067 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951075 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951082 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951084 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951086 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951089 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951097 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951108 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951113 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951124 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951148 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951151 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951153 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951159 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951167 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94183 (Get FASTA)   NCBI Sequence Viewer  
  P84109 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008773058   ⟸   XM_008774836
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008773055   ⟸   XM_008774833
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008773057   ⟸   XM_008774835
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008773056   ⟸   XM_008774834
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008758678   ⟸   XM_008760456
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008758675   ⟸   XM_008760453
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008758677   ⟸   XM_008760455
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008758676   ⟸   XM_008760454
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017445030   ⟸   XM_017589541
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017445036   ⟸   XM_017589547
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017445035   ⟸   XM_017589546
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017445033   ⟸   XM_017589544
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017445843   ⟸   XM_017590354
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445846   ⟸   XM_017590357
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017445845   ⟸   XM_017590356
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017445844   ⟸   XM_017590355
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000021114   ⟸   ENSRNOT00000021114
RefSeq Acc Id: ENSRNOP00000021229   ⟸   ENSRNOT00000021229
RefSeq Acc Id: ENSRNOP00000021225   ⟸   ENSRNOT00000021226
RefSeq Acc Id: ENSRNOP00000021347   ⟸   ENSRNOT00000021347
RefSeq Acc Id: ENSRNOP00000021289   ⟸   ENSRNOT00000021289
RefSeq Acc Id: XP_038951000   ⟸   XM_039095072
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950985   ⟸   XM_039095057
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950994   ⟸   XM_039095066
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950966   ⟸   XM_039095038
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951004   ⟸   XM_039095076
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950996   ⟸   XM_039095068
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950990   ⟸   XM_039095062
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950986   ⟸   XM_039095058
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950993   ⟸   XM_039095065
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950976   ⟸   XM_039095048
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950987   ⟸   XM_039095059
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950968   ⟸   XM_039095040
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950965   ⟸   XM_039095037
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951017   ⟸   XM_039095089
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038951008   ⟸   XM_039095080
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951023   ⟸   XM_039095095
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038951020   ⟸   XM_039095092
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038951012   ⟸   XM_039095084
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951027   ⟸   XM_039095099
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038951043   ⟸   XM_039095115
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038951035   ⟸   XM_039095107
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038951053   ⟸   XM_039095125
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038951063   ⟸   XM_039095135
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038951167   ⟸   XM_039095239
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038951153   ⟸   XM_039095225
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038951113   ⟸   XM_039095185
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038951068   ⟸   XM_039095140
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038951122   ⟸   XM_039095194
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038951140   ⟸   XM_039095212
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038951160   ⟸   XM_039095232
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038951086   ⟸   XM_039095158
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038951117   ⟸   XM_039095189
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038951075   ⟸   XM_039095147
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038951084   ⟸   XM_039095156
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038951157   ⟸   XM_039095229
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038951154   ⟸   XM_039095226
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038951156   ⟸   XM_039095228
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038951089   ⟸   XM_039095161
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038951082   ⟸   XM_039095154
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038951097   ⟸   XM_039095169
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038951159   ⟸   XM_039095231
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038951144   ⟸   XM_039095216
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038951108   ⟸   XM_039095180
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038951116   ⟸   XM_039095188
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038951124   ⟸   XM_039095196
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038951148   ⟸   XM_039095220
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038951151   ⟸   XM_039095223
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038951149   ⟸   XM_039095221
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038951067   ⟸   XM_039095139
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038951134   ⟸   XM_039095206
- Peptide Label: isoform X31
Protein Domains
SH3   SoHo

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 259411303 259411304 A T snv ACI/EurMcwi (RGD), ACI/N (MCW), FHL/EurMcwi (RGD), M520/N (MCW), LE/Stm (RGD), FHH/EurMcwi (RGD)
1 259455744 259455745 G A snv ACI/EurMcwi (RGD), M520/N (MCW), ACI/EurMcwi (MCW), ACI/N (MCW)
1 259469152 259469153 A G snv WKY/Gcrc (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/N (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586598 AgrOrtholog
Ensembl Genes ENSRNOG00000015658 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021114 UniProtKB/TrEMBL
  ENSRNOP00000021225 UniProtKB/TrEMBL
  ENSRNOP00000021229 UniProtKB/TrEMBL
  ENSRNOP00000021289 UniProtKB/TrEMBL
  ENSRNOP00000021347 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021114 UniProtKB/TrEMBL
  ENSRNOT00000021226 UniProtKB/TrEMBL
  ENSRNOT00000021229 UniProtKB/TrEMBL
  ENSRNOT00000021289 UniProtKB/TrEMBL
  ENSRNOT00000021347 UniProtKB/TrEMBL
InterPro SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Sorb UniProtKB/TrEMBL
  SORBS1_SH3 UniProtKB/TrEMBL
  SORBS1_SH3_1 UniProtKB/TrEMBL
  SORBS1_SH3_2 UniProtKB/TrEMBL
NCBI Gene 686098 ENTREZGENE
Pfam SH3_1 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
  Sorb UniProtKB/TrEMBL
PhenoGen Sorbs1 PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  SOHO UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  Sorb UniProtKB/TrEMBL
Superfamily-SCOP SH3 UniProtKB/TrEMBL
UniProt F1M820_RAT UniProtKB/TrEMBL
  F1M840_RAT UniProtKB/TrEMBL
  F1M865_RAT UniProtKB/TrEMBL
  F1M866_RAT UniProtKB/TrEMBL
  F1M8Z8_RAT UniProtKB/TrEMBL
  P84109 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-07-08 Sorbs1  sorbin and SH3 domain containing 1   LOC678826  similar to sorbin and SH3 domain containing 1 isoform 3  Data Merged 1643240 APPROVED
2008-04-30 Sorbs1  sorbin and SH3 domain containing 1   Sorbs1_predicted  sorbin and SH3 domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-10-11 Sorbs1_predicted  sorbin and SH3 domain containing 1 (predicted)  LOC686098  similar to sorbin and SH3 domain containing 1 isoform 3  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 PENDING
2006-11-20 LOC678826  similar to sorbin and SH3 domain containing 1 isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686098  similar to sorbin and SH3 domain containing 1 isoform 3      Symbol and Name status set to provisional 70820 PROVISIONAL