Mxi1 (MAX interactor 1, dimerization protein)

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Gene: Mxi1 (MAX interactor 1, dimerization protein) Rattus norvegicus

Analyze

Symbol:

Mxi1

Name:

MAX interactor 1, dimerization protein

RGD ID:

3128

Description:

Is predicted to contribute to DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription, DNA-templated. Localizes to cytoplasm and nucleus. Used to study breast adenocarcinoma and esophageal cancer. Human ortholog(s) of this gene implicated in neurofibrosarcoma and prostate cancer. Orthologous to human MXI1 (MAX interactor 1, dimerization protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-ethoxyethanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC100360467; LOC100360898; Max interacting protein 1; MAX interactor 1; Max interactor 1-like; MAX-interacting protein 1; MXI-WR

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	252,323,915 - 252,383,682 (+)	NCBI
Rnor_6.0 Ensembl	1	274,030,978 - 274,090,071 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	274,030,748 - 274,090,071 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	259,219,584 - 259,259,979 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	259,720,129 - 259,760,524 (+)	NCBI
Celera	1	248,065,618 - 248,106,019 (+)	NCBI		Celera
RH 3.4 Map	1	1664.7	RGD
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast adenocarcinoma (IAGP)

esophageal cancer (IAGP)

kidney disease (ISO)

neurofibrosarcoma (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-ethoxyethanol (EXP)

2-methoxyethanol (EXP)

3H-1,2-dithiole-3-thione (EXP)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

acrylamide (EXP)

adefovir pivoxil (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

chloroacetaldehyde (ISO)

choline (ISO)

chromium(6+) (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

CU-O LINKAGE (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

folic acid (ISO)

formaldehyde (ISO)

gemcitabine (ISO)

gentamycin (EXP)

geraniol (ISO)

glafenine (EXP)

ifosfamide (ISO)

L-methionine (ISO)

methylseleninic acid (ISO)

mitoxantrone (ISO)

N-nitrosodiethylamine (EXP)

nickel dichloride (ISO)

nitroglycerin (EXP)

ozone (ISO)

phenethyl caffeate (EXP)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst formation (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (IDA)

Cellular Component

chromatin (IBA)

cytoplasm (IDA)

cytosol (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IDA,ISO)

RNA polymerase II transcription regulator complex (IEA,ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA,ISO)

protein binding (ISO)

protein dimerization activity (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

References

References - curated


1.	Eagle LR, etal., Nat Genet. 1995 Mar;9(3):249-55.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA data from the GO Consortium
4.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
5.	Li XJ, etal., Jpn J Cancer Res. 1999 Jul;90(7):740-6.
6.	MGD data from the GO Consortium
7.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	OMIM Disease Annotation Pipeline
9.	RGD automated data pipeline
10.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	RGD automated import pipeline for gene-chemical interactions
12.	von Boehmer H, etal., Cold Spring Harb Symp Quant Biol 1977;41 Pt 2:539-45.
13.	Wang DY, etal., Pathol Int 2000 May;50(5):373-83.
14.	Wang Y, etal., Cell Mol Biol (Noisy-le-grand). 1997 Mar;43(2):175-88.
15.	Yin X, etal., Oncogene 2001 Aug 2;20(34):4650-64.

Additional References at PubMed

PMID:8425219	PMID:11875718	PMID:12477932	PMID:15467743	PMID:27869233

Genomics

Comparative Map Data

Mxi1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	252,323,915 - 252,383,682 (+)	NCBI
Rnor_6.0 Ensembl	1	274,030,978 - 274,090,071 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	274,030,748 - 274,090,071 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	259,219,584 - 259,259,979 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	259,720,129 - 259,760,524 (+)	NCBI
Celera	1	248,065,618 - 248,106,019 (+)	NCBI		Celera
RH 3.4 Map	1	1664.7	RGD
Cytogenetic Map	1	q55	NCBI

MXI1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	10	110,207,605 - 110,287,365 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	10	110,207,605 - 110,287,365 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	10	111,967,363 - 112,047,123 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	111,957,353 - 112,037,113 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	10	111,975,751 - 112,037,113	NCBI
Celera	10	105,699,035 - 105,778,792 (+)	NCBI
Cytogenetic Map	10	q25.2	NCBI
HuRef	10	105,597,875 - 105,677,336 (+)	NCBI		HuRef
CHM1_1	10	112,249,113 - 112,328,883 (+)	NCBI		CHM1_1

Mxi1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	53,298,509 - 53,361,724 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	19	53,298,949 - 53,364,241 (+)	Ensembl
GRCm38	19	53,310,128 - 53,373,293 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	53,310,518 - 53,375,810 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	53,384,996 - 53,450,300 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	19	53,363,833 - 53,426,600 (+)	NCBI			mm8
Celera	19	55,492,539 - 55,557,842 (+)	NCBI		Celera
Cytogenetic Map	19	D2	NCBI
cM Map	19	47.53	NCBI

Mxi1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	1,088,175 - 1,156,925 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	1,088,175 - 1,156,521 (-)	NCBI	ChiLan1.0	ChiLan1.0

MXI1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	10	110,252,184 - 110,328,782 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	10	106,799,511 - 106,878,697 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MXI1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	28	21,584,638 - 21,652,920 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	28	21,584,856 - 21,655,233 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mxi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936486	1,103,908 - 1,173,982 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MXI1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	120,643,793 - 120,722,626 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	120,643,691 - 120,722,632 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	131,570,946 - 131,610,162 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MXI1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	103,131,534 - 103,211,609 (+)	NCBI
ChlSab1.1 Ensembl	9	103,131,420 - 103,209,231 (+)	Ensembl

Mxi1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624737	35,956,443 - 36,034,678 (-)	NCBI

Position Markers

RH127398

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	274,089,854 - 274,090,033	NCBI	Rnor6.0
Rnor_5.0	1	281,503,512 - 281,503,691	UniSTS	Rnor5.0
Celera	1	248,105,802 - 248,105,981	UniSTS
RH 3.4 Map	1	1665.3	UniSTS
Cytogenetic Map	1	q55	UniSTS

BG376247

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	274,088,835 - 274,088,944	NCBI	Rnor6.0
Rnor_5.0	1	281,502,493 - 281,502,602	UniSTS	Rnor5.0
Celera	1	248,104,783 - 248,104,892	UniSTS
RH 3.4 Map	1	1670.6	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH94430

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	281,502,217 - 281,502,380	NCBI	Rnor5.0
RGSC_v3.4	1	259,220,933 - 259,221,095	UniSTS	RGSC3.4
RH 3.4 Map	1	1664.7	UniSTS
Cytogenetic Map	1	q55	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	236795785	281795785	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	245529606	282763074	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	236265430	281265430	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	156446196	274977688	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	238830534	278228767	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	243272341	282763074	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	244401175	282365384	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	235850810	280850810	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	244992467	282365384	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	252955158	280632620	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	258132568	282763074	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	167394665	278228889	Rat
1581544	Rf52	Renal function QTL 52		0.05	total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	252948438	281795785	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	241482188	281795785	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	191825895	279986079	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	255728828	282763074	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	238824734	279986079	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	266793821	279986079	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	0.00000487	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	259295704	282763074	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	258709726	281795785	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	244401175	282365384	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	217054291	281795785	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	213476630	278978026	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	244087148	282763074	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	213476630	278978026	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	213476630	278978026	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	196395041	282763074	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	249206242	281795785	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	192639698	278228889	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	161784169	278228889	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	192639698	278228889	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	161784169	278228889	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	236795785	281795785	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	163796316	282763074	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	230420627	282645769	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	236265430	281265430	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	244148899	282763074	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	242302911	282763074	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	184
Count of miRNA genes:	114
Interacting mature miRNAs:	148
Transcripts:	ENSRNOT00000042822
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	54	38	19	38	8	11	74	35	41	11	8
Low			3	3		3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF003008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY495712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U44728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042822 ⟹ ENSRNOP00000040770

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	274,049,676 - 274,090,071 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076387 ⟹ ENSRNOP00000068001

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	274,030,978 - 274,090,066 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076779 ⟹ ENSRNOP00000067990

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	274,049,533 - 274,090,070 (+)	Ensembl

RefSeq Acc Id:

NM_013160 ⟹ NP_037292

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	252,343,285 - 252,383,682 (+)	NCBI
Rnor_6.0	1	274,049,676 - 274,090,071 (+)	NCBI
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI
RGSC_v3.4	1	259,219,584 - 259,259,979 (-)	RGD
Celera	1	248,065,618 - 248,106,019 (+)	RGD

Sequence:

show sequence

GCCGTCTGTGGCGCCTCCTGTCGGCCGGGGGCGGGAGCGCGGAGCCCATGGAGCGGGTGCGGAT
GATCAACGTGCAGCGCCTGCTGGAGGCCGCGGAGTTTTTGGAGCGCAGGGAGCGAGAGTGTGAA
CATGGCTACGCTTCATCATTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCAAAGCCCCCAC
GGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGGAGCAGCAACACCAGCACTGCCAACAGATC
TACACACAATGAGTTGGAAAAGAATCGACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTAAAA
GTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTTGGTTTGCTCAACAAAGCCA
AAGCACACATCAAGAAACTTGAAGAAGCCGAAAGGAAGAGCCAGCACCAGCTTGAGAACTTGGA
ACGAGAACAGAGATTTTTAAAGCGGCGACTGGAACAGCTGCAGGGTCCTCAGGAGATGGAGCGG
ATACGAATGGACAGCATTGGATCAACGATCTCCTCAGATCGCTCGGATTCAGAGCGAGAGGAGA
TTGAAGTGGATGTGGAAAGCACAGAGTTCTCCCATGGAGAAGTGGACAACATCAGTACCACCAG
CATCAGCGACATCGATGACCACAGCAGCCTGCAGAGTATTGGGAGTGACGAGGGCTACTCCAGT
GCCAGTGTCAAACTCTCCTTCACGTCCTAGAACCCAGCATGACATAACAGTGCAGGGCGAAGTG
CTCACTGGGCCAGTTCAATACCGTCTCTCAAATTGGGTTCATGACGCAGTCTCCTCTTTAAAAC
TAAAAACTATACTTGAACAAAAGGGTCAGAAGACCTGTATTTAAGCAAATACTTAAAAAGTGGG
GTAGAGCCTCCCCGGTAGAACAAATACTCCTGTATTTGGAAAGAATACAGTTTCTAACAGCAGC
AGAAATGTGTGTGGTTATCTTGAGTTGACGTGGTTGACTTAAGAGACAATGGAGACTCCATTCT
CCTGTTGTAGTTTGCTCACTCCGTGTTGAGCAGACATTTAAGGATAGGGTTATGAACCCTTCCT
GAGCTTCTTGGTCCTAGAAACAAAATCAAACTTAGAGTAAGGAGAAGACAGGATAATCAGGCAT
TAATCTTGGATAGCTAAAGAGCTATTAAAACTCAGCCTCTGTGTATCATGAAGCCTGTGGATGA
TCAATTCTTTTAAAAAATGAATTTTTAAAAAGCTCATATCGTGCTCTACAAAAGGAGAGACTCC
CATGAAGCCTTTTGAACGAGATCATCATGCAGCTCAGCTTTCTGTTGGATTCCATGCTAAGCCA
GCTAACCTTACCTGCATTGATAGCACTAGAGCAGGCAAGCACCCGCTCGCCACCCTTCGGCCAC
GTAGGGGCAGCCCATGCATGACAGCCTGAATCACAGGAGGAACAGCTCCGTGTGCGAGCCTCGG
TGTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTGTAGCAGGCCAAGGTCTGAGCCACCACAGC
ATTTTTATTTGAGATTTTGATAACTGTTTGTATGTGTTGAAAACCAAAATGACATCTTTTTAAA
GCTTGTCCATAAGTAAACATAGATGTCTTTTATAGTGGAATAAAACACGTGGGGGAAATCATCT
ATTTTGATGCAGCATTTGATAATGATAAACACCTCACGCCTCACTCTTTTCAGTGCGCAGGACG
GATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCTGTTTTTGTTTTCTTTAGGACCATTCCCTT
TTACCAGCTTTTAACCGTCTGATACCCGTGGTAGGCACACTATCCTAGTTAACATAGTTATGTT
CCGCACTTGTCTCATTTAATGTAAAGATCTGCATTTTCTACAGGCAGTTTCCTCCCCACAATCC
CACTGTGCAGGTGCTACTGTTGCTCTCACAAATACCTGCAGAAATGTTATCTTCTGGGTGAGAC
TTCCAGCCCGCACTCCGTGTCATGTGCTCCCTCCTTTCAAACTCGAAGGTTTCCCTCTGGGCCA
CTGCTTTGCTCCGGGAAGCCTTTCTGGATACCTTACCCCAAGCTGTTCGGACTTTGTATTCTTT
AAATAATTTAACTACCCTTAATTACTTAAAAAAAAAAGCTTTATGATTTTCATAACTTATTGCC
GATTTTAATGGGTTGTTAATTTCAGTCCTGTAGTTTTATTTTATGTTTAGATAGGGCTGGGCAA
GGAGAAAGAAAATAAAAACAACCATATTCAGCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231604 ⟹ XP_006231666

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	252,323,915 - 252,383,682 (+)	NCBI
Rnor_6.0	1	274,030,748 - 274,090,071 (+)	NCBI
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI

Sequence:

show sequence

ATTTTTTTTTTCCATTCGTATTAAAGCACAGTGCTGTCTACGCAGTTAGGATTTGCGGAGAGGC
GGGGAAGGGTGCTGGGATAGGCAGAGGGCGGGCCCTGCCTCCCTAGCCGCCACCATTTATTTTG
ACCGGTCAGATGGCGACAGGCTCGCACTAGGACCCAGGCGCCACAGCGCCTCCGTCTGTCCTGT
AGGTTCATTCAATCTCCCATACACACAGATCCACACAGCGAGAGCGACACACACTCACACTCAC
AACCGCACGCAGCGAGGCTCGGCAAGTCAGGCCGGCTCCTTGCCCCGGCGCCTCCTCGGCTTCA
GCAGGCCGGATCTCCCAGGGGACCCGCAGCTCGGCCGGCTGCACAGCCCAGGACCAGGAGCAGC
TCGGCGGACCACCGTGCCTCCATGGGCAAACGCGGGCGGCCGCGCAAGGAGGCGCGCTGCGAGG
GCGCGGGGCTGGTCCCCGTCGCGCCCCCGGCCATGCCCCCGGCCGCGGCCGCGCCCCAGCCCCC
GGCGCAGCCCGAGGAGCCGGCGGGGGCCAAGCCCCGGTGCCCCTTCTCGGACATTTTCAACACC
AGCGAGAACTCGATGGAGAAGCACATCAACACTTTTCTGCAGAACGTGCAGATTCTGCTCGAGG
CAGCCAGCTACCTGGAGCAGATCGAGAAAGAAAACAAAAAGTGTGAACATGGCTACGCTTCATC
ATTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCAAAGCCCCCACGGAGGTTGAGCCGGGCA
CAGAAACACAGCAGTGGGAGCAGCAACACCAGCACTGCCAACAGATCTACACACAATGAGTTGG
AAAAGAATCGACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTAAAAGTTCTGATCCCGCTGGG
CCCAGACTGCACCAGGCACACAACACTTGGTTTGCTCAACAAAGCCAAAGCACACATCAAGAAA
CTTGAAGAAGCCGAAAGGAAGAGCCAGCACCAGCTTGAGAACTTGGAACGAGAACAGAGATTTT
TAAAGCGGCGACTGGAACAGCTGCAGGGTCCTCAGGAGATGGAGCGGATACGAATGGACAGCAT
TGGATCAACGATCTCCTCAGATCGCTCGGATTCAGAGCGAGAGGAGATTGAAGTGGATGTGGAA
AGCACAGAGTTCTCCCATGGAGAAGTGGACAACATCAGTACCACCAGCATCAGCGACATCGATG
ACCACAGCAGCCTGCAGAGTATTGGGAGTGACGAGGGCTACTCCAGTGCCAGTGTCAAACTCTC
CTTCACGTCCTAGAACCCAGCATGACATAACAGTGCAGGGCGAAGTGCTCACTGGGCCAGTTCA
ATACCGTCTCTCAAATTGGGTTCATGACGCAGTCTCCTCTTTAAAACTAAAAACTATACTTGAA
CAAAAGGGTCAGAAGACCTGTATTTAAGCAAATACTTAAAAAGTGGGGTAGAGCCTCCCCGGTA
GAACAAATACTCCTGTATTTGGAAAGAATACAGTTTCTAACAGCAGCAGAAATGTGTGTGGTTA
TCTTGAGTTGACGTGGTTGACTTAAGAGACAATGGAGACTCCATTCTCCTGTTGTAGTTTGCTC
ACTCCGTGTTGAGCAGACATTTAAGGATAGGGTTATGAACCCTTCCTGAGCTTCTTGGTCCTAG
AAACAAAATCAAACTTAGAGTAAGGAGAAGACAGGATAATCAGGCATTAATCTTGGATAGCTAA
AGAGCTATTAAAACTCAGCCTCTGTGTATCATGAAGCCTGTGGATGATCAATTCTTTTAAAAAA
TGAATTTTTAAAAAGCTCATATCGTGCTCTACAAAAGGAGAGACTCCCATGAAGCCTTTTGAAC
GAGATCATCATGCAGCTCAGCTTTCTGTTGGATTCCATGCTAAGCCAGCTAACCTTACCTGCAT
TGATAGCACTAGAGCAGGCAAGCACCCGCTCGCCACCCTTCGGCCACGTAGGGGCAGCCCATGC
ATGACAGCCTGAATCACAGGAGGAACAGCTCCGTGTGCGAGCCTCGGTGTCTGCGCGGATCTGA
GGAGCTGTGCACGCAGTGTAGCAGGCCAAGGTCTGAGCCACCACAGCATTTTTATTTGAGATTT
TGATAACTGTTTGTATGTGTTGAAAACCAAAATGACATCTTTTTAAAGCTTGTCCATAAGTAAA
CATAGATGTCTTTTATAGTGGAATAAAACACGTGGGGGAAATCATCTATTTTGATGCAGCATTT
GATAATGATAAACACCTCACGCCTCACTCTTTTCAGTGCGCAGGACGGATGAGGTCTGGGCTGG
GTAGACGAAGGCAATGCTGTTTTTGTTTTCTTTAGGACCATTCCCTTTTACCAGCTTTTAACCG
TCTGATACCCGTGGTAGGCACACTATCCTAGTTAACATAGTTATGTTCCGCACTTGTCTCATTT
AATGTAAAGATCTGCATTTTCTACAGGCAGTTTCCTCCCCACAATCCCACTGTGCAGGTGCTAC
TGTTGCTCTCACAAATACCTGCAGAAATGTTATCTTCTGGGTGAGACTTCCAGCCCGCACTCCG
TGTCATGTGCTCCCTCCTTTCAAACTCGAAGGTTTCCCTCTGGGCCACTGCTTTGCTCCGGGAA
GCCTTTCTGGATACCTTACCCCAAGCTGTTCGGACTTTGTATTCTTTAAATAATTTAACTACCC
TTAATTACTTAAAAAAAAAAGCTTTATGATTTTCATAACTTATTGCCGATTTTAATGGGTTGTT
AATTTCAGTCCTGTAGTTTTATTTTATGTTTAGATAGGGCTGGGCAAGGAGAAAGAAAATAAAA
ACAACCATATTCAGCAGTGCA

hide sequence

RefSeq Acc Id:

XM_006231605 ⟹ XP_006231667

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	274,050,031 - 274,090,071 (+)	NCBI
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI

Sequence:

show sequence

GAGGTTTGCTCTGGAGTGCAGAGTGTGAACATGGCTACGCTTCATCATTCCCCTCCATGCCGAG
CCCCCGGCTACAGCACTCAAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGG
AGCAGCAACACCAGCACTGCCAACAGATCTACACACAATGAGTTGGAAAAGAATCGACGAGCTC
ACCTGCGCCTGTGTTTAGAACGCTTAAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCA
CACAACACTTGGTTTGCTCAACAAAGCCAAAGCACACATCAAGAAACTTGAAGAAGCCGAAAGG
AAGAGCCAGCACCAGCTTGAGAACTTGGAACGAGAACAGAGATTTTTAAAGCGGCGACTGGAAC
AGCTGCAGGGTCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACGATCTCCTC
AGATCGCTCGGATTCAGAGCGAGAGGAGATTGAAGTGGATGTGGAAAGCACAGAGTTCTCCCAT
GGAGAAGTGGACAACATCAGTACCACCAGCATCAGCGACATCGATGACCACAGCAGCCTGCAGA
GTATTGGGAGTGACGAGGGCTACTCCAGTGCCAGTGTCAAACTCTCCTTCACGTCCTAGAACCC
AGCATGACATAACAGTGCAGGGCGAAGTGCTCACTGGGCCAGTTCAATACCGTCTCTCAAATTG
GGTTCATGACGCAGTCTCCTCTTTAAAACTAAAAACTATACTTGAACAAAAGGGTCAGAAGACC
TGTATTTAAGCAAATACTTAAAAAGTGGGGTAGAGCCTCCCCGGTAGAACAAATACTCCTGTAT
TTGGAAAGAATACAGTTTCTAACAGCAGCAGAAATGTGTGTGGTTATCTTGAGTTGACGTGGTT
GACTTAAGAGACAATGGAGACTCCATTCTCCTGTTGTAGTTTGCTCACTCCGTGTTGAGCAGAC
ATTTAAGGATAGGGTTATGAACCCTTCCTGAGCTTCTTGGTCCTAGAAACAAAATCAAACTTAG
AGTAAGGAGAAGACAGGATAATCAGGCATTAATCTTGGATAGCTAAAGAGCTATTAAAACTCAG
CCTCTGTGTATCATGAAGCCTGTGGATGATCAATTCTTTTAAAAAATGAATTTTTAAAAAGCTC
ATATCGTGCTCTACAAAAGGAGAGACTCCCATGAAGCCTTTTGAACGAGATCATCATGCAGCTC
AGCTTTCTGTTGGATTCCATGCTAAGCCAGCTAACCTTACCTGCATTGATAGCACTAGAGCAGG
CAAGCACCCGCTCGCCACCCTTCGGCCACGTAGGGGCAGCCCATGCATGACAGCCTGAATCACA
GGAGGAACAGCTCCGTGTGCGAGCCTCGGTGTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTG
TAGCAGGCCAAGGTCTGAGCCACCACAGCATTTTTATTTGAGATTTTGATAACTGTTTGTATGT
GTTGAAAACCAAAATGACATCTTTTTAAAGCTTGTCCATAAGTAAACATAGATGTCTTTTATAG
TGGAATAAAACACGTGGGGGAAATCATCTATTTTGATGCAGCATTTGATAATGATAAACACCTC
ACGCCTCACTCTTTTCAGTGCGCAGGACGGATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCT
GTTTTTGTTTTCTTTAGGACCATTCCCTTTTACCAGCTTTTAACCGTCTGATACCCGTGGTAGG
CACACTATCCTAGTTAACATAGTTATGTTCCGCACTTGTCTCATTTAATGTAAAGATCTGCATT
TTCTACAGGCAGTTTCCTCCCCACAATCCCACTGTGCAGGTGCTACTGTTGCTCTCACAAATAC
CTGCAGAAATGTTATCTTCTGGGTGAGACTTCCAGCCCGCACTCCGTGTCATGTGCTCCCTCCT
TTCAAACTCGAAGGTTTCCCTCTGGGCCACTGCTTTGCTCCGGGAAGCCTTTCTGGATACCTTA
CCCCAAGCTGTTCGGACTTTGTATTCTTTAAATAATTTAACTACCCTTAATTACTTAAAAAAAA
AAGCTTTATGATTTTCATAACTTATTGCCGATTTTAATGGGTTGTTAATTTCAGTCCTGTAGTT
TTATTTTATGTTTAGATAGGGCTGGGCAAGGAGAAAGAAAATAAAAACAACCATATTCAGCAGT
GCA

hide sequence

RefSeq Acc Id:

XM_006231606 ⟹ XP_006231668

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	252,343,958 - 252,383,682 (+)	NCBI
Rnor_6.0	1	274,050,349 - 274,090,071 (+)	NCBI
Rnor_5.0	1	281,443,967 - 281,503,729 (+)	NCBI

Sequence:

show sequence

CGGGGGCGGAGTGGAGTGGGGGTAATGCCGGCTGAAGAGCTGCGGGAGGGGCTCCCTGCTATTG
TGAGCATGGGGTACAGTGAGATGGTGTTGCCTTGGAGGTGAAGATAGGTGGAGGAATAGGAAGA
CAGAGGAAGGAGTGTGAAGAGCCTAAATGCTGCTGTCAGGAGAGAGGAGGTCCTTACCGAGACG
TTGTGGTCAAAAGAGCTGGGGCACGCAAAAACGTTGAGGCTACAAAGGCACTGAAGAGAGTGTG
AACATGGCTACGCTTCATCATTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCAAAGCCCCC
ACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGGAGCAGCAACACCAGCACTGCCAACAGA
TCTACACACAATGAGTTGGAAAAGAATCGACGAGCTCACCTGCGCCTGTGTTTAGAACGCTTAA
AAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTTGGTTTGCTCAACAAAGC
CAAAGCACACATCAAGAAACTTGAAGAAGCCGAAAGGAAGAGCCAGCACCAGCTTGAGAACTTG
GAACGAGAACAGAGATTTTTAAAGCGGCGACTGGAACAGCTGCAGGGTCCTCAGGAGATGGAGC
GGATACGAATGGACAGCATTGGATCAACGATCTCCTCAGATCGCTCGGATTCAGAGCGAGAGGA
GATTGAAGTGGATGTGGAAAGCACAGAGTTCTCCCATGGAGAAGTGGACAACATCAGTACCACC
AGCATCAGCGACATCGATGACCACAGCAGCCTGCAGAGTATTGGGAGTGACGAGGGCTACTCCA
GTGCCAGTGTCAAACTCTCCTTCACGTCCTAGAACCCAGCATGACATAACAGTGCAGGGCGAAG
TGCTCACTGGGCCAGTTCAATACCGTCTCTCAAATTGGGTTCATGACGCAGTCTCCTCTTTAAA
ACTAAAAACTATACTTGAACAAAAGGGTCAGAAGACCTGTATTTAAGCAAATACTTAAAAAGTG
GGGTAGAGCCTCCCCGGTAGAACAAATACTCCTGTATTTGGAAAGAATACAGTTTCTAACAGCA
GCAGAAATGTGTGTGGTTATCTTGAGTTGACGTGGTTGACTTAAGAGACAATGGAGACTCCATT
CTCCTGTTGTAGTTTGCTCACTCCGTGTTGAGCAGACATTTAAGGATAGGGTTATGAACCCTTC
CTGAGCTTCTTGGTCCTAGAAACAAAATCAAACTTAGAGTAAGGAGAAGACAGGATAATCAGGC
ATTAATCTTGGATAGCTAAAGAGCTATTAAAACTCAGCCTCTGTGTATCATGAAGCCTGTGGAT
GATCAATTCTTTTAAAAAATGAATTTTTAAAAAGCTCATATCGTGCTCTACAAAAGGAGAGACT
CCCATGAAGCCTTTTGAACGAGATCATCATGCAGCTCAGCTTTCTGTTGGATTCCATGCTAAGC
CAGCTAACCTTACCTGCATTGATAGCACTAGAGCAGGCAAGCACCCGCTCGCCACCCTTCGGCC
ACGTAGGGGCAGCCCATGCATGACAGCCTGAATCACAGGAGGAACAGCTCCGTGTGCGAGCCTC
GGTGTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTGTAGCAGGCCAAGGTCTGAGCCACCACA
GCATTTTTATTTGAGATTTTGATAACTGTTTGTATGTGTTGAAAACCAAAATGACATCTTTTTA
AAGCTTGTCCATAAGTAAACATAGATGTCTTTTATAGTGGAATAAAACACGTGGGGGAAATCAT
CTATTTTGATGCAGCATTTGATAATGATAAACACCTCACGCCTCACTCTTTTCAGTGCGCAGGA
CGGATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCTGTTTTTGTTTTCTTTAGGACCATTCCC
TTTTACCAGCTTTTAACCGTCTGATACCCGTGGTAGGCACACTATCCTAGTTAACATAGTTATG
TTCCGCACTTGTCTCATTTAATGTAAAGATCTGCATTTTCTACAGGCAGTTTCCTCCCCACAAT
CCCACTGTGCAGGTGCTACTGTTGCTCTCACAAATACCTGCAGAAATGTTATCTTCTGGGTGAG
ACTTCCAGCCCGCACTCCGTGTCATGTGCTCCCTCCTTTCAAACTCGAAGGTTTCCCTCTGGGC
CACTGCTTTGCTCCGGGAAGCCTTTCTGGATACCTTACCCCAAGCTGTTCGGACTTTGTATTCT
TTAAATAATTTAACTACCCTTAATTACTTAAAAAAAAAAGCTTTATGATTTTCATAACTTATTG
CCGATTTTAATGGGTTGTTAATTTCAGTCCTGTAGTTTTATTTTATGTTTAGATAGGGCTGGGC
AAGGAGAAAGAAAATAAAAACAACCATATTCAGCAGTGCA

hide sequence

RefSeq Acc Id:

XM_017588832 ⟹ XP_017444321

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	274,049,853 - 274,090,071 (+)	NCBI

Sequence:

show sequence

GCGCGGCTGGCAAGGGGAGAGTGTGAACATGGCTACGCTTCATCATTCCCCTCCATGCCGAGCC
CCCGGCTACAGCACTCAAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGGAG
CAGCAACACCAGCACTGCCAACAGATCTACACACAATGAGTTGGAAAAGAATCGACGAGCTCAC
CTGCGCCTGTGTTTAGAACGCTTAAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACA
CAACACTTGGTTTGCTCAACAAAGCCAAAGCACACATCAAGAAACTTGAAGAAGCCGAAAGGAA
GAGCCAGCACCAGCTTGAGAACTTGGAACGAGAACAGAGATTTTTAAAGCGGCGACTGGAACAG
CTGCAGGGTCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACGATCTCCTCAG
ATCGCTCGGATTCAGAGCGAGAGGAGATTGAAGTGGATGTGGAAAGCACAGAGTTCTCCCATGG
AGAAGTGGACAACATCAGTACCACCAGCATCAGCGACATCGATGACCACAGCAGCCTGCAGAGT
ATTGGGAGTGACGAGGGCTACTCCAGTGCCAGTGTCAAACTCTCCTTCACGTCCTAGAACCCAG
CATGACATAACAGTGCAGGGCGAAGTGCTCACTGGGCCAGTTCAATACCGTCTCTCAAATTGGG
TTCATGACGCAGTCTCCTCTTTAAAACTAAAAACTATACTTGAACAAAAGGGTCAGAAGACCTG
TATTTAAGCAAATACTTAAAAAGTGGGGTAGAGCCTCCCCGGTAGAACAAATACTCCTGTATTT
GGAAAGAATACAGTTTCTAACAGCAGCAGAAATGTGTGTGGTTATCTTGAGTTGACGTGGTTGA
CTTAAGAGACAATGGAGACTCCATTCTCCTGTTGTAGTTTGCTCACTCCGTGTTGAGCAGACAT
TTAAGGATAGGGTTATGAACCCTTCCTGAGCTTCTTGGTCCTAGAAACAAAATCAAACTTAGAG
TAAGGAGAAGACAGGATAATCAGGCATTAATCTTGGATAGCTAAAGAGCTATTAAAACTCAGCC
TCTGTGTATCATGAAGCCTGTGGATGATCAATTCTTTTAAAAAATGAATTTTTAAAAAGCTCAT
ATCGTGCTCTACAAAAGGAGAGACTCCCATGAAGCCTTTTGAACGAGATCATCATGCAGCTCAG
CTTTCTGTTGGATTCCATGCTAAGCCAGCTAACCTTACCTGCATTGATAGCACTAGAGCAGGCA
AGCACCCGCTCGCCACCCTTCGGCCACGTAGGGGCAGCCCATGCATGACAGCCTGAATCACAGG
AGGAACAGCTCCGTGTGCGAGCCTCGGTGTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTGTA
GCAGGCCAAGGTCTGAGCCACCACAGCATTTTTATTTGAGATTTTGATAACTGTTTGTATGTGT
TGAAAACCAAAATGACATCTTTTTAAAGCTTGTCCATAAGTAAACATAGATGTCTTTTATAGTG
GAATAAAACACGTGGGGGAAATCATCTATTTTGATGCAGCATTTGATAATGATAAACACCTCAC
GCCTCACTCTTTTCAGTGCGCAGGACGGATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCTGT
TTTTGTTTTCTTTAGGACCATTCCCTTTTACCAGCTTTTAACCGTCTGATACCCGTGGTAGGCA
CACTATCCTAGTTAACATAGTTATGTTCCGCACTTGTCTCATTTAATGTAAAGATCTGCATTTT
CTACAGGCAGTTTCCTCCCCACAATCCCACTGTGCAGGTGCTACTGTTGCTCTCACAAATACCT
GCAGAAATGTTATCTTCTGGGTGAGACTTCCAGCCCGCACTCCGTGTCATGTGCTCCCTCCTTT
CAAACTCGAAGGTTTCCCTCTGGGCCACTGCTTTGCTCCGGGAAGCCTTTCTGGATACCTTACC
CCAAGCTGTTCGGACTTTGTATTCTTTAAATAATTTAACTACCCTTAATTACTTAAAAAAAAAA
GCTTTATGATTTTCATAACTTATTGCCGATTTTAATGGGTTGTTAATTTCAGTCCTGTAGTTTT
ATTTTATGTTTAGATAGGGCTGGGCAAGGAGAAAGAAAATAAAAACAACCATATTCAGCAGTGC
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_037292	(Get FASTA)	NCBI Sequence Viewer
	XP_006231666	(Get FASTA)	NCBI Sequence Viewer
	XP_006231668	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB16960	(Get FASTA)	NCBI Sequence Viewer
	AAB61595	(Get FASTA)	NCBI Sequence Viewer
	AAH81824	(Get FASTA)	NCBI Sequence Viewer
	AAR95702	(Get FASTA)	NCBI Sequence Viewer
	EDL94419	(Get FASTA)	NCBI Sequence Viewer
	EDL94420	(Get FASTA)	NCBI Sequence Viewer
	EDL94421	(Get FASTA)	NCBI Sequence Viewer
	EDL94422	(Get FASTA)	NCBI Sequence Viewer
	EDL94423	(Get FASTA)	NCBI Sequence Viewer
	EDL94424	(Get FASTA)	NCBI Sequence Viewer
	O09015	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_037292 ⟸ NM_013160

- UniProtKB:

Q642D1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERVRMINVQRLLEAAEFLERRERECEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNT
STANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQH
QLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD
NISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS

hide sequence

RefSeq Acc Id:	XP_006231666 ⟸ XM_006231604
- Peptide Label:	isoform X1
- UniProtKB:	A0A096MJ60 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKRGRPRKEARCEGAGLVPVAPPAMPPAAAAPQPPAQPEEPAGAKPRCPFSDIFNTSENSMEK HINTFLQNVQILLEAASYLEQIEKENKKCEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGS SNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERK SQHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHG EVDNISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS hide sequence

RefSeq Acc Id:	XP_006231667 ⟸ XM_006231605
- Peptide Label:	isoform X2
- Sequence:	show sequence MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDC TRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGST ISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS hide sequence

RefSeq Acc Id:	XP_006231668 ⟸ XM_006231606
- Peptide Label:	isoform X2
- UniProtKB:	A0A096MJ49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDC TRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGST ISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS hide sequence

RefSeq Acc Id:	XP_017444321 ⟸ XM_017588832
- Peptide Label:	isoform X2
- Sequence:	show sequence MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDC TRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGST ISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLQSIGSDEGYSSASVKLSFTS hide sequence

RefSeq Acc Id:

ENSRNOP00000040770 ⟸ ENSRNOT00000042822

RefSeq Acc Id:

ENSRNOP00000068001 ⟸ ENSRNOT00000076387

RefSeq Acc Id:

ENSRNOP00000067990 ⟸ ENSRNOT00000076779

Protein Domains

bHLH

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690991

Promoter ID:

EPDNEW_R1514

Type:

initiation region

Name:

Mxi1_2

Description:

MAX interactor 1, dimerization protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1515

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	274,030,990 - 274,031,050	EPDNEW

RGD ID:

13690994

Promoter ID:

EPDNEW_R1515

Type:

initiation region

Name:

Mxi1_1

Description:

MAX interactor 1, dimerization protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1514

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	274,049,545 - 274,049,605	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3128	AgrOrtholog
Ensembl Genes	ENSRNOG00000034078	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000040770	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000067990	UniProtKB/TrEMBL
	ENSRNOP00000068001	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042822	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076387	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076779	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133853	IMAGE-MGC_LOAD
InterPro	bHLH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25701	UniProtKB/TrEMBL
MGC_CLONE	MGC:93544	IMAGE-MGC_LOAD
NCBI Gene	25701	ENTREZGENE
Pfam	HLH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mxi1	PhenoGen
PROSITE	BHLH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	HLH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A096MJ49	ENTREZGENE, UniProtKB/TrEMBL
	A0A096MJ60	ENTREZGENE, UniProtKB/TrEMBL
	MXI1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	P70542_RAT	UniProtKB/TrEMBL
	Q642D1	ENTREZGENE, UniProtKB/TrEMBL
	Q6RKA6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Mxi1	MAX interactor 1, dimerization protein	LOC100360467	Max interactor 1-like	Data Merged	737654	PROVISIONAL
2013-04-12	Mxi1	MAX interactor 1, dimerization protein	LOC100360898	Max interactor 1-like	Data Merged	737654	PROVISIONAL
2012-11-21	Mxi1	MAX interactor 1, dimerization protein	Mxi1	MAX interactor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100360467	Max interactor 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-05	LOC100360898	Max interactor 1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-09-09	Mxi1	MAX interactor 1	Mxi1	Max interacting protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Mxi1	max interacting protein 1			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_process	regulates Myc oncoprotein activity thus playing an important role in proliferation, differentiation, and apoptosis	70302

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM