Slc25a28 (solute carrier family 25 member 28) - Rat Genome Database

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Gene: Slc25a28 (solute carrier family 25 member 28) Rattus norvegicus
Analyze
Symbol: Slc25a28
Name: solute carrier family 25 member 28
RGD ID: 1584155
Description: Predicted to enable ferrous iron transmembrane transporter activity. Predicted to be involved in iron import into the mitochondrion. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial membrane. Orthologous to human SLC25A28 (solute carrier family 25 member 28); PARTICIPATES IN iron uptake pathway; INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC688811; mitoferrin-2; similar to solute carrier family 25, member 28; solute carrier family 25 (mitochondrial iron transporter), member 28; solute carrier family 25, member 28
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,480,106 - 252,491,365 (-)NCBIGRCr8
mRatBN7.21242,530,877 - 242,542,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,530,899 - 242,542,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1250,680,428 - 250,691,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,377,462 - 257,388,721 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,030,582 - 250,041,843 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,420,039 - 263,431,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,420,061 - 263,431,290 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,865,547 - 270,876,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41247,159,998 - 247,171,232 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1238,351,706 - 238,362,976 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11773964   PMID:12477932   PMID:14651853   PMID:16511496   PMID:18614015   PMID:19075006   PMID:19805291  


Genomics

Comparative Map Data
Slc25a28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,480,106 - 252,491,365 (-)NCBIGRCr8
mRatBN7.21242,530,877 - 242,542,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,530,899 - 242,542,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1250,680,428 - 250,691,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,377,462 - 257,388,721 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,030,582 - 250,041,843 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,420,039 - 263,431,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,420,061 - 263,431,290 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,865,547 - 270,876,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41247,159,998 - 247,171,232 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1238,351,706 - 238,362,976 (-)NCBICelera
Cytogenetic Map1q54NCBI
SLC25A28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381099,610,522 - 99,659,286 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1099,610,519 - 99,622,793 (-)EnsemblGRCh38hg38GRCh38
GRCh3710101,370,279 - 101,380,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610101,360,265 - 101,370,211 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410101,360,271 - 101,370,090NCBI
Celera1095,107,676 - 95,117,622 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1094,997,611 - 95,007,554 (-)NCBIHuRef
CHM1_110101,652,707 - 101,662,649 (-)NCBICHM1_1
T2T-CHM13v2.010100,493,405 - 100,542,276 (-)NCBIT2T-CHM13v2.0
Slc25a28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391943,652,240 - 43,663,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1943,652,240 - 43,663,320 (-)EnsemblGRCm39 Ensembl
GRCm381943,663,801 - 43,675,006 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1943,663,801 - 43,674,881 (-)EnsemblGRCm38mm10GRCm38
MGSCv371943,738,291 - 43,749,371 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361943,717,112 - 43,728,192 (-)NCBIMGSCv36mm8
Celera1944,450,345 - 44,461,383 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.67NCBI
Slc25a28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555075,521,255 - 5,530,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555075,520,915 - 5,530,615 (-)NCBIChiLan1.0ChiLan1.0
SLC25A28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28111,519,808 - 111,568,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110111,525,128 - 111,573,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,227,847 - 96,276,246 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11099,720,193 - 99,730,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1099,720,193 - 99,729,881 (-)Ensemblpanpan1.1panPan2
SLC25A28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12812,533,639 - 12,543,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2812,716,990 - 12,727,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,000,989 - 13,011,293 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,001,322 - 13,010,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12812,547,952 - 12,558,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02812,579,154 - 12,589,452 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02812,720,569 - 12,730,851 (-)NCBIUU_Cfam_GSD_1.0
Slc25a28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721334,423,107 - 34,433,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936636462,205 - 473,359 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936636462,303 - 472,937 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14110,795,307 - 110,805,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114110,795,304 - 110,805,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,241,473 - 120,251,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1992,669,107 - 92,679,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl992,668,856 - 92,679,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604853,665,337 - 53,675,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473711,311,772 - 11,324,821 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473711,314,907 - 11,324,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a28
62 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:125
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000022633
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1213533809243914901Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1224054293243747962Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1224054293243747962Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1223262787260522016Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat

Markers in Region
RH128534  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21242,530,914 - 242,531,065 (+)MAPPERmRatBN7.2
Rnor_6.01263,420,077 - 263,420,227NCBIRnor6.0
Rnor_5.01270,865,585 - 270,865,735UniSTSRnor5.0
RGSC_v3.41247,171,046 - 247,171,196UniSTSRGSC3.4
Celera1238,351,742 - 238,351,892UniSTS
RH 3.4 Map11618.48UniSTS
Cytogenetic Map1q54UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000022633   ⟹   ENSRNOP00000022633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,530,899 - 242,542,115 (-)Ensembl
Rnor_6.0 Ensembl1263,420,061 - 263,431,290 (-)Ensembl
RefSeq Acc Id: NM_001109515   ⟹   NP_001102985
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,480,108 - 252,491,342 (-)NCBI
mRatBN7.21242,530,879 - 242,542,115 (-)NCBI
Rnor_6.01263,420,041 - 263,431,290 (-)NCBI
Rnor_5.01270,865,547 - 270,876,806 (-)NCBI
RGSC_v3.41247,159,998 - 247,171,232 (+)RGD
Celera1238,351,706 - 238,362,976 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231567   ⟹   XP_006231629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,480,106 - 252,491,364 (-)NCBI
mRatBN7.21242,530,877 - 242,542,137 (-)NCBI
Rnor_6.01263,420,039 - 263,431,312 (-)NCBI
Rnor_5.01270,865,547 - 270,876,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091206   ⟹   XP_038947134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,480,106 - 252,483,337 (-)NCBI
mRatBN7.21242,530,877 - 242,534,133 (-)NCBI
RefSeq Acc Id: XM_039091207   ⟹   XP_038947135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,482,045 - 252,491,365 (-)NCBI
mRatBN7.21242,530,877 - 242,542,138 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102985 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947135 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66775 (Get FASTA)   NCBI Sequence Viewer  
  EDL94257 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022633.3
RefSeq Acc Id: NP_001102985   ⟸   NM_001109515
- UniProtKB: A6JHD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231629   ⟸   XM_006231567
- Peptide Label: isoform X1
- UniProtKB: G3V865 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022633   ⟸   ENSRNOT00000022633
RefSeq Acc Id: XP_038947135   ⟸   XM_039091207
- Peptide Label: isoform X3
- UniProtKB: B2RYH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947134   ⟸   XM_039091206
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V865-F1-model_v2 AlphaFold G3V865 1-364 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690926
Promoter ID:EPDNEW_R1450
Type:initiation region
Name:Slc25a28_1
Description:solute carrier family 25 member 28
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01263,431,270 - 263,431,330EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584155 AgrOrtholog
BioCyc Gene G2FUF-55623 BioCyc
Ensembl Genes ENSRNOG00000016751 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022633.6 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom UniProtKB/TrEMBL
KEGG Report rno:688811 UniProtKB/TrEMBL
NCBI Gene 688811 ENTREZGENE
PANTHER MITOFERRIN-1-RELATED UniProtKB/TrEMBL
  MITOFERRIN-2 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PhenoGen Slc25a28 PhenoGen
PROSITE SOLCAR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016751 RatGTEx
Superfamily-SCOP Mitoch_carrier UniProtKB/TrEMBL
UniProt A6JHD3 ENTREZGENE, UniProtKB/TrEMBL
  B2RYH0 ENTREZGENE, UniProtKB/TrEMBL
  G3V865 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc25a28  solute carrier family 25 member 28  Slc25a28  solute carrier family 25 (mitochondrial iron transporter), member 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc25a28  solute carrier family 25 (mitochondrial iron transporter), member 28  Slc25a28  solute carrier family 25, member 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Slc25a28  solute carrier family 25, member 28  LOC688811  similar to solute carrier family 25, member 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC688811  similar to solute carrier family 25, member 28      Symbol and Name status set to provisional 70820 PROVISIONAL