SLC25A28 (solute carrier family 25 member 28) - Rat Genome Database

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Pathways
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Gene: SLC25A28 (solute carrier family 25 member 28) Pan paniscus
Analyze
Symbol: SLC25A28
Name: solute carrier family 25 member 28
RGD ID: 12029411
Description: ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (inferred); INVOLVED IN iron import into the mitochondrion (inferred); iron ion transport (inferred); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitoferrin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28111,519,808 - 111,568,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110111,525,128 - 111,573,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,227,847 - 96,276,246 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11099,720,193 - 99,730,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1099,720,193 - 99,729,881 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC25A28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28111,519,808 - 111,568,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110111,525,128 - 111,573,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,227,847 - 96,276,246 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11099,720,193 - 99,730,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1099,720,193 - 99,729,881 (-)Ensemblpanpan1.1panPan2
SLC25A28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381099,610,522 - 99,659,286 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1099,610,519 - 99,622,793 (-)EnsemblGRCh38hg38GRCh38
GRCh3710101,370,279 - 101,380,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610101,360,265 - 101,370,211 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410101,360,271 - 101,370,090NCBI
Celera1095,107,676 - 95,117,622 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1094,997,611 - 95,007,554 (-)NCBIHuRef
CHM1_110101,652,707 - 101,662,649 (-)NCBICHM1_1
T2T-CHM13v2.010100,493,405 - 100,542,276 (-)NCBIT2T-CHM13v2.0
Slc25a28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391943,652,240 - 43,663,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1943,652,240 - 43,663,320 (-)EnsemblGRCm39 Ensembl
GRCm381943,663,801 - 43,675,006 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1943,663,801 - 43,674,881 (-)EnsemblGRCm38mm10GRCm38
MGSCv371943,738,291 - 43,749,371 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361943,717,112 - 43,728,192 (-)NCBIMGSCv36mm8
Celera1944,450,345 - 44,461,383 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.67NCBI
Slc25a28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,480,106 - 252,491,365 (-)NCBIGRCr8
mRatBN7.21242,530,877 - 242,542,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,530,899 - 242,542,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1250,680,428 - 250,691,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,377,462 - 257,388,721 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,030,582 - 250,041,843 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,420,039 - 263,431,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,420,061 - 263,431,290 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,865,547 - 270,876,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41247,159,998 - 247,171,232 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1238,351,706 - 238,362,976 (-)NCBICelera
Cytogenetic Map1q54NCBI
Slc25a28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555075,521,255 - 5,530,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555075,520,915 - 5,530,615 (-)NCBIChiLan1.0ChiLan1.0
SLC25A28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12812,533,639 - 12,543,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2812,716,990 - 12,727,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,000,989 - 13,011,293 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,001,322 - 13,010,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12812,547,952 - 12,558,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02812,579,154 - 12,589,452 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02812,720,569 - 12,730,851 (-)NCBIUU_Cfam_GSD_1.0
Slc25a28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721334,423,107 - 34,433,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936636462,205 - 473,359 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936636462,303 - 472,937 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14110,795,307 - 110,805,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114110,795,304 - 110,805,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,241,473 - 120,251,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1992,669,107 - 92,679,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl992,668,856 - 92,679,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604853,665,337 - 53,675,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473711,311,772 - 11,324,821 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473711,314,907 - 11,324,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052756   ⟹   ENSPPAP00000029902
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1099,720,193 - 99,729,881 (-)Ensembl
RefSeq Acc Id: XM_014346548   ⟹   XP_014202034
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28111,519,808 - 111,529,727 (-)NCBI
NHGRI_mPanPan110111,525,128 - 111,535,046 (-)NCBI
Mhudiblu_PPA_v01096,227,847 - 96,237,760 (-)NCBI
PanPan1.11099,720,193 - 99,729,875 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034931265   ⟹   XP_034787156
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28111,519,808 - 111,529,512 (-)NCBI
NHGRI_mPanPan110111,525,128 - 111,534,632 (-)NCBI
Mhudiblu_PPA_v01096,227,847 - 96,237,349 (-)NCBI
RefSeq Acc Id: XM_034931266   ⟹   XP_034787157
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28111,519,808 - 111,568,234 (-)NCBI
NHGRI_mPanPan110111,525,128 - 111,573,554 (-)NCBI
Mhudiblu_PPA_v01096,227,847 - 96,276,246 (-)NCBI
RefSeq Acc Id: XM_034931268   ⟹   XP_034787159
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28111,519,808 - 111,529,584 (-)NCBI
NHGRI_mPanPan110111,525,128 - 111,534,903 (-)NCBI
Mhudiblu_PPA_v01096,227,847 - 96,237,629 (-)NCBI
RefSeq Acc Id: XM_055093276   ⟹   XP_054949251
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28111,519,808 - 111,568,472 (-)NCBI
NHGRI_mPanPan110111,525,128 - 111,573,792 (-)NCBI
Protein Sequences
Protein RefSeqs XP_014202034 (Get FASTA)   NCBI Sequence Viewer  
  XP_034787156 (Get FASTA)   NCBI Sequence Viewer  
  XP_034787157 (Get FASTA)   NCBI Sequence Viewer  
  XP_034787159 (Get FASTA)   NCBI Sequence Viewer  
  XP_054949251 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029902.1
Reference Protein Sequences
RefSeq Acc Id: XP_014202034   ⟸   XM_014346548
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BN93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034787157   ⟸   XM_034931266
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BN93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034787159   ⟸   XM_034931268
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034787156   ⟸   XM_034931265
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BN93 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000029902   ⟸   ENSPPAT00000052756
RefSeq Acc Id: XP_054949251   ⟸   XM_055093276
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BN93 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052756.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC25A28 ENTREZGENE
PANTHER MITOFERRIN-1-RELATED UniProtKB/TrEMBL
  MITOFERRIN-2 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A2R9BN93 ENTREZGENE, UniProtKB/TrEMBL