Bw54 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw54 (Body weight QTL 54) Rattus norvegicus

Symbol: Bw54
Name: Body weight QTL 54
RGD ID: 1549910
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: Not Available
P Value: 0.05
Variance: Not Available
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81263,946,994 - 269,633,915RGD_MAPPER_PIPELINE
mRatBN7.21214,647,894 - 259,647,894RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01236,795,785 - 281,795,785RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01283,061,367 - 289,137,268RGDRnor5.0
RGSC_v3.41261,180,160 - 267,111,153RGDRGSC3.4
RGSC_v3.11261,391,205 - 267,322,172RGD
Cross Type: Not Available
Strains Crossed: F344.OLETF-(D1Rat166-D1Rat90)/Tj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Pnlip is a candidate Gene for Bw54


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratobesity  IAGP 1358859 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratabnormal fat pad morphology  IAGP 1358859 RGD 
Bw54Ratincreased body weight  IAGP 1358859 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratbody weight  IDA 1358859 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratcontrol condition  IDA 1358859 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratbody weighing method  IDA 1358859 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54RatF344.OLETF-(D1Rat166-D1Rat90)/Tj  IEA 1358859 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw54Ratbody mass  IDA 1358859 RGD 


#
Reference Title
Reference Citation
1. Pnlip encoding pancreatic lipase is possible candidate for obesity QTL in the OLETF rat. Muramatsu Y, etal., Biochem Biophys Res Commun 2005 Jun 17;331(4):1270-6.

Related QTL Description Reference
Niddm24 maps to same region RGD:1358859
Bw115 maps to same region RGD:1358859



1 to 20 of 598 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
621370Gcnt1glucosaminyl (N-acetyl) transferase 11214718344214755735Rat
41396975LOC120099997acyl-protein thioesterase 1-like1214772482214777313Rat
1549748Rfkriboflavin kinase1214799880214807440Rat
620326Pcsk5proprotein convertase subtilisin/kexin type 51214837847215267626Rat
41207476LOC120100483small nucleolar RNA U131215255621215255715Rat
41092905Rnu6-1267RNA, U6 small nuclear 12671215294117215294226Rat
41085563LOC120100429small nucleolar RNA SNORA171215798358215798482Rat
1597038Rnps1-ps3RNA binding protein with serine rich domain 1, pseudogene 31215867429215868901Rat
628849Ostf1osteoclast stimulating factor 11216002037216049226Rat
1564687Nmrk1nicotinamide riboside kinase 11216049350216076792Rat
40930941Rps15-ps7ribosomal protein S15, pseudogene 71216059427216061856Rat
1311863Carnmt1carnosine N-methyltransferase 11216093720216123360Rat
1563237C1h9orf40similar to human chromosome 9 open reading frame 401216128687216132896Rat
1309942Trpm6transient receptor potential cation channel, subfamily M, member 61216136407216320523Rat
7668904LOC102554711uncharacterized LOC1025547111216159777216162543Rat
1306778RorbRAR-related orphan receptor B1216363629216544390Rat
7658951LOC102554959uncharacterized LOC1025549591216520876216525016Rat
11474079Gapdhl2glyceraldehyde-3-phosphate dehydrogenase like 21216612021216613034Rat
41303320LOC120098081uncharacterized LOC1200980811216690552216691985Rat
41166240LOC120100427small nucleolar RNA SNORA171216711164216711298Rat

1 to 20 of 598 rows
1 to 20 of 912 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
67776D1Uwm82371214737483214737720Ratregion
5066984AU0480341491214763679214763828Ratregion
5041928RH1291401501214806001214806151Ratregion
5039994RH1280271801214807123214807303Ratregion
5069266AU0466112991214826081214826374Ratregion
5029482D1Bda562181214838009214838227Ratregion
5502985D19Dcr4471214924277214924324Ratregion
5082939BF3904511681215029096215029264Ratregion
5073584RH1375201521215113055215113207Ratregion
60217D1Got2162481215510738215510986Ratregion
5068284AU0472391381215637854215637992Ratregion
5059656BF3941131811215994901215995082Ratregion
5084658AA8514702201216110553216110773Ratregion
5075576RH1386731201216123153216123273Ratregion
5045636RH1312911961216132603216132799Ratregion
5046608RH1318511911216356958216357149Ratregion
5057788BE1015431751216468641216468816Ratregion
5058730BE1023961571216477175216477332Ratregion
5063280BI3016341581216733943216734101Ratregion
5078900RH1406172201216745395216745615Ratregion
1 to 20 of 912 rows

Flank 1: (D1Rat225)
Rat AssemblyChrPosition (strand)Source
GRCr81263,946,994 - 263,947,135 (+)Marker Load Pipeline
Rnor_5.01283,061,368 - 283,061,559NCBI
Rnor_5.01283,061,367 - 283,061,559NCBI
RGSC_v3.41261,180,160 - 261,180,301RGD
RGSC_v3.41261,180,161 - 261,180,301UniSTS
RGSC_v3.11261,391,205 - 261,391,346RGD
RH 3.4 Map11653.3RGD
SHRSP x BN Map1143.59RGD
FHH x ACI Map1133.71RGD
Flank 2: (D1Rat90)
Rat AssemblyChrPosition (strand)Source
GRCr81269,633,753 - 269,633,915 (+)Marker Load Pipeline
mRatBN7.21259,647,732 - 259,647,894 (+)MAPPER
Rnor_6.01281,795,624 - 281,795,785NCBI
Rnor_5.01289,137,107 - 289,137,268UniSTS
RGSC_v3.41267,110,921 - 267,111,153RGD
RGSC_v3.41267,110,926 - 267,111,087UniSTS
RGSC_v3.11267,322,011 - 267,322,172RGD
Celera1255,291,309 - 255,291,470UniSTS
RH 3.4 Map11708.8UniSTS
RH 3.4 Map11708.8RGD
RH 2.0 Map11313.1999RGD
SHRSP x BN Map1148.15RGD


1 to 10 of 123 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat

1 to 10 of 123 rows


Note Type Note Reference
qtl_general region represents a refined map to narrow the Nidd6/of obesity susceptibility region 1358859
qtl_statistics_details QTL is also significant for Body fat measured by fat pad weights 1358859