Tectb (tectorin beta) - Rat Genome Database

Name: Tectb
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tectb (tectorin beta) Rattus norvegicus

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Symbol:

Tectb

Name:

tectorin beta

RGD ID:

1305835

Description:

Predicted to be an extracellular matrix structural constituent. Predicted to be located in extracellular matrix. Predicted to be active in cell surface and extracellular space. Orthologous to human TECTB (tectorin beta); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

beta-tectorin; LOC292124

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TECTB (tectorin beta)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tectb (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tectb (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TECTB (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TECTB (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tectb (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TECTB (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TECTB (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tectb (tectorin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KRTAP2-4 (keratin associated protein 2-4)	HGNC	OMA
Homo sapiens (human):	KRTAP2-1 (keratin associated protein 2-1)	HGNC	OMA
Homo sapiens (human):	KRTAP2-3 (keratin associated protein 2-3)	HGNC	OMA
Homo sapiens (human):	KRTAP2-2 (keratin associated protein 2-2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TECTB (tectorin beta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tectb (tectorin beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tectb (tectorin beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tectb	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	264,226,963 - 264,242,010 (+)	NCBI		GRCr8
mRatBN7.2	1	254,221,621 - 254,236,669 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	254,221,621 - 254,236,669 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	262,426,711 - 262,441,717 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	269,132,790 - 269,147,794 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	261,780,477 - 261,795,483 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	275,957,698 - 275,976,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	275,957,698 - 275,976,572 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	283,358,674 - 283,377,599 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	261,482,994 - 261,498,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	261,694,167 - 261,707,830 (+)	NCBI
Celera	1	249,928,360 - 249,943,433 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

copper atom (EXP)

copper(0) (EXP)

dichloroacetic acid (ISO)

endosulfan (EXP)

paracetamol (EXP)

paraquat (EXP)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

rotenone (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cell surface (IBA)

extracellular matrix (ISO)

extracellular space (IBA)

Molecular Function

extracellular matrix structural constituent (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9079715

Genomics

Comparative Map Data

Tectb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	264,226,963 - 264,242,010 (+)	NCBI		GRCr8
mRatBN7.2	1	254,221,621 - 254,236,669 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	254,221,621 - 254,236,669 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	262,426,711 - 262,441,717 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	269,132,790 - 269,147,794 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	261,780,477 - 261,795,483 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	275,957,698 - 275,976,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	275,957,698 - 275,976,572 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	283,358,674 - 283,377,599 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	261,482,994 - 261,498,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	261,694,167 - 261,707,830 (+)	NCBI
Celera	1	249,928,360 - 249,943,433 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

TECTB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	112,283,400 - 112,305,038 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	112,283,400 - 112,305,038 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	114,043,158 - 114,064,796 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	114,033,483 - 114,053,060 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	114,033,482 - 114,053,060	NCBI
Celera	10	107,771,025 - 107,790,599 (+)	NCBI		Celera
Cytogenetic Map	10	q25.2	NCBI
HuRef	10	107,671,685 - 107,693,068 (+)	NCBI		HuRef
CHM1_1	10	114,325,466 - 114,346,829 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	113,174,401 - 113,196,039 (+)	NCBI		T2T-CHM13v2.0

Tectb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	55,169,158 - 55,184,745 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	55,169,165 - 55,184,745 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	55,180,726 - 55,196,313 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	55,180,733 - 55,196,313 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	55,255,375 - 55,270,803 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	55,234,135 - 55,249,563 (+)	NCBI		MGSCv36	mm8
Celera	19	57,371,980 - 57,387,427 (+)	NCBI		Celera
Cytogenetic Map	19	D2	NCBI
cM Map	19	51.13	NCBI

Tectb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	17,413,841 - 17,425,192 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	17,413,841 - 17,425,192 (+)	NCBI	ChiLan1.0	ChiLan1.0

TECTB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	124,159,821 - 124,181,870 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	124,165,157 - 124,187,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	108,875,621 - 108,897,402 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	112,315,820 - 112,336,808 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	112,315,820 - 112,336,800 (+)	Ensembl	panpan1.1		panPan2

TECTB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	23,359,019 - 23,378,150 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	23,359,162 - 23,376,760 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	23,510,832 - 23,529,940 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	23,891,255 - 23,910,380 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	23,891,371 - 23,908,987 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	23,448,582 - 23,467,680 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	23,459,707 - 23,478,835 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	23,655,112 - 23,674,215 (+)	NCBI		UU_Cfam_GSD_1.0

Tectb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	22,678,008 - 22,709,315 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	2,852,016 - 2,883,265 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	2,852,015 - 2,883,265 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TECTB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	122,691,421 - 122,710,351 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	122,690,796 - 122,711,124 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	133,604,709 - 133,624,167 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TECTB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	105,152,311 - 105,196,040 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	105,175,643 - 105,195,420 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	66,378,589 - 66,399,862 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tectb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	34,146,587 - 34,157,957 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	34,144,175 - 34,158,417 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tectb
59 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	443
Count of miRNA genes:	257
Interacting mature miRNAs:	298
Transcripts:	ENSRNOT00000021041
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	223262787	260522016	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	245907761	257976495	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	218753816	256448513	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	11	40	94	62	61	30	24	30	6	144	85	74	13	42	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021041 ⟹ ENSRNOP00000021041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	254,221,621 - 254,236,669 (+)	Ensembl
Rnor_6.0 Ensembl	1	275,957,698 - 275,976,572 (+)	Ensembl

RefSeq Acc Id:

NM_001106200 ⟹ NP_001099670

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	264,226,963 - 264,242,010 (+)	NCBI
mRatBN7.2	1	254,221,621 - 254,236,669 (+)	NCBI
Rnor_6.0	1	275,957,698 - 275,976,572 (+)	NCBI
Rnor_5.0	1	283,358,674 - 283,377,599 (+)	NCBI
RGSC_v3.4	1	261,482,994 - 261,498,415 (+)	RGD
Celera	1	249,928,360 - 249,943,433 (+)	RGD

Sequence:

show sequence

TCTTACCTTGACTTTAACTCTTCTTTCATATTTCCGATACAGAACCATTGAGGCCCGGGGCCTG
GAAGGAAGGTGAGCATTTGGCCCATTCGGTTTGGGCACCTGGCAGAGATCAGCTCAAGAGGAAC
CATGGTGGCCAGGGCCTTCGTTCTGCTGGCCCTCTTTGCGGAAGCTTCGGCGAAATCATGCACT
CCGAATAAAGCAGATGTCATCCTTGTGTTTTGTTACCCCAAGACCATCATCACTAAAATCCCCG
AGTGTCCCTACGGATGGGAAGTACACCAGCTGGCCCTCGGGGGACTGTGTTACAATGGGGTCCA
TGAAGGTGGCTACTACCAATTCGTCATCCCAGATCTGTCACCCAAGAACAAGTCCTACTGTGGA
ACCCAGTCAGAGTACAAGCCTCCCATCTACCACTTCTATAGCCACATCGTGTCCAATGACAGCA
CCGTGATTGTGAAGAACCAGCCTGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTT
GGTGAACCAGGCTGCCTTTGACCAGAGAGTGGCCACTGTTCATGTCAAGAACGGGAGCATGGGC
ACATTTGAAAGCCAGTTGTCCCTCAACTTCTACACTAATGCCAAGTTTTCCACCAAGAAAGAAG
CTCCCTTCGTCCTGGAAACATCTGAAATCGGTTCGGATCTGTTTGCAGGAGTAGAAGCCAAGGG
ACTAAGTGTTCGGTTTAAAGTAGTCTTGAATAGCTGTTGGGCCACCCCCTCGGCTGACTTCATG
TACCCCTTGCAATGGCAGCTGATCAATAAGGGTTGCTCCACTGATGAAACCGTCCTCGTGCACG
AGAATGGCAAGGACCACAGGGCCACTTTCCAATTCAATGCCTTCCGGTTCCAGAACATCCCCAA
ACTATCCAAGGTTTGGTTACACTGTGAGACGTTCATCTGCGACAGTGAGAAGCTCTCCTGCCCA
GTGAACTGTGACAAACGGAAACGCATGCTACGTGACCAGACAGGGGGTGTCCTGGTTGTGGAGC
TGTCCCTACGGAGCAGAGGGTTTTCCGGTCTCTGTGACTTCTCAGATGTTCTTCTCCACCTCGT
CCTGATGCTGGGGACCTGGGCCGTGTTGTAGGAGGTAGCTGGCAGCTGCAGCAGCTCTCTCCAC
GGCCACCCTGAACTGTGACAGATTTGTTTATTGTGCTGCCAGAAAGAACAGACAGAAGACTGCA
TTGCTGGGGAGCCAGGAGCTGCCCTTTGCCAAATATGTGTCCCATGATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTTGGTGATCCACTGCCTTGGAGTCAT
ACTTCCTGTGGCAGTTAGATCCTGATAATCTTCTCCAAGAAGCTGGGCAGGAGCCTCCTCTCCT
CCGCTCAAATTAGAGCAGCACTTGAAAGCTACCTTCCTTATAAAAGACACTCCCATCACACGCA
GCTTAGCATTTGGAGACAGGGACAGACCATCACCACAAAAATCAATGTCAAATACAGAATCCAC
GGGAATAGCCAGCTTTTATCCAGCAGGCACTCTGTCACTGCATTCTAAGGATCAGCATGGACCC
CCTAGGCAGGAGGTCCCAGTCTTCAAACCACAATGTGGAAATCCAAGTTAAACACAATACATTT
GCTCAAACTTCTGTAATGGATGAGAAGCAGGTTCTTGAGAGCCAGCTGCTAGTACTAGTCTGCT
TTTATTATAGGGTTTCTTAAATCGATATAATCATTAGGTTGGTGTAAATGCCTTGTCCTTATGA
GTGATCATATTTTTTTAGTCACAAATAAATAGGAAACAGACAATGAACAAAGTAAAACCCTCCT
TCATTTCGCGTAAGAGTGTGGCATTGCCTGCGTGAAATGTATTTGCATGAGAGTGGAAAGACTC
TGGCCGAGTCCAGGTTCTCTGAGATGTGAGAACAGATCTTCCCCACACGTGTGGTGCCCTGTGC
ACTCCCTAGCCTCGTGTGTGCTCTTGGAAGTCTTCCCGTCAGGATGGTGGACAGCATTTCACCT
TCACTGAAAACATCCAAGCCTGTTTCTACTTCCAACTCGCTCACGTGTGATTGTGGGGACTGAA
CCAACCACTCGTCAGAAATGTCATGCACATTCGGTCAGTGACATCACATGGCAGTGCACACTCA
GAACTAGCCATCCCTGTGACCCAGAGCGCACCAGTGTCAGTGGGTCACTTTGGCCGAGAAGCAA
ACTGAACATACCAGTCCTGTGAGAGCATTAGCTGAGGTATGACAGGAGAGACCTTGTGCTAAGT
CTCTTTTTCTTTGTCACTTGCATACTTGGCATTTGAAATCACATGTCAGTTGGTCCCTCTGTAT
TTAACACCCTTGAGAGGTCTTGATATCTACAGTTGGCTGATCTTCTTACAACTTGCATAAATAA
ACTCAGAAATTGTGTTTGTTTAGCCACAGGGTAGAGTACGGTGGTTCCACGCAGTCTAAACTTG
GTACCTAGCTGGTGCTCCAATCAGTTTGGGATCACTTCCTGATGTAAAGTAGGAGTTAGTTGTA
GCCAAGAATTACAGAAAACATGCTTTATTGATCCTAGTCAGGAACTCTTAGGAAGCATACATAA
AGCCAAGTACATAGGTGTTTGGCTGTCAGAGTAAAACAATGTTAAAACCATCATCATGATTTAT
GAGCTTGTATCTCAACCCGGTGCTATGGACTAAATAAAATGTCTGGAATAAGTAACCTGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099670	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94457	(Get FASTA)	NCBI Sequence Viewer
	EDL94458	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021041.3

RefSeq Acc Id:	NP_001099670 ⟸ NM_001106200
- Peptide Label:	precursor
- UniProtKB:	D4AC15 (UniProtKB/TrEMBL), A6JHY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVARAFVLLALFAEASAKSCTPNKADVILVFCYPKTIITKIPECPYGWEVHQLALGGLCYNGVH EGGYYQFVIPDLSPKNKSYCGTQSEYKPPIYHFYSHIVSNDSTVIVKNQPVNYSFSCTYHSTYL VNQAAFDQRVATVHVKNGSMGTFESQLSLNFYTNAKFSTKKEAPFVLETSEIGSDLFAGVEAKG LSVRFKVVLNSCWATPSADFMYPLQWQLINKGCSTDETVLVHENGKDHRATFQFNAFRFQNIPK LSKVWLHCETFICDSEKLSCPVNCDKRKRMLRDQTGGVLVVELSLRSRGFSGLCDFSDVLLHLV LMLGTWAVL hide sequence

Ensembl Acc Id:

ENSRNOP00000021041 ⟸ ENSRNOT00000021041

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AC15-F1-model_v2	AlphaFold	D4AC15	1-329	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305835	AgrOrtholog
BioCyc Gene	G2FUF-55348	BioCyc
Ensembl Genes	ENSRNOG00000015671	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021041.4	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.4100	UniProtKB/TrEMBL
InterPro	Endoglin/CD105	UniProtKB/TrEMBL
	Endoglin/CD105_CS	UniProtKB/TrEMBL
	ZP-C	UniProtKB/TrEMBL
KEGG Report	rno:292124	UniProtKB/TrEMBL
NCBI Gene	292124	ENTREZGENE
PANTHER	BETA-TECTORIN	UniProtKB/TrEMBL
	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	UniProtKB/TrEMBL
Pfam	Zona_pellucida	UniProtKB/TrEMBL
PhenoGen	Tectb	PhenoGen
PROSITE	ZP_1	UniProtKB/TrEMBL
	ZP_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015671	RatGTEx
SMART	SM00241	UniProtKB/TrEMBL
UniProt	A6JHY3	ENTREZGENE, UniProtKB/TrEMBL
	D4AC15	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tectb	tectorin beta	Tectb_predicted	tectorin beta (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tectb_predicted	tectorin beta (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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