Stn1 (STN1 subunit of CST complex)

Gene: Stn1 (STN1 subunit of CST complex) Rattus norvegicus

Analyze

Symbol:

Stn1

Name:

STN1 subunit of CST complex

RGD ID:

1305637

Description:

Predicted to enable single-stranded telomeric DNA binding activity. Predicted to be involved in negative regulation of telomere maintenance via telomerase; positive regulation of DNA replication; and telomere maintenance via telomere lengthening. Predicted to be located in fibrillar center; intermediate filament cytoskeleton; and nucleoplasm. Predicted to be part of CST complex. Predicted to be active in chromosome, telomeric region. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human STN1 (STN1 subunit of CST complex); INTERACTS WITH 3-chloropropane-1,2-diol; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CST complex subunit STN1; LOC294025; Obfc1; oligonucleotide/oligosaccharide-binding fold containing 1; oligonucleotide/oligosaccharide-binding fold-containing protein 1; STN1, CST complex subunit; suppressor of cdc thirteen homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STN1 (STN1 subunit of CST complex)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Stn1 (STN1, CST complex subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stn1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STN1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STN1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stn1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STN1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STN1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stn1 (STN1 subunit of CST complex)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	STN1 (STN1 subunit of CST complex)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stn1 (STN1, CST complex subunit)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stn1 (STN1 subunit of CST complex)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stn1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	256,336,916 - 256,371,143 (-)	NCBI		GRCr8
mRatBN7.2	1	246,391,311 - 246,429,844 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	246,395,613 - 246,429,531 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	254,523,111 - 254,556,301 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	261,216,742 - 261,250,525 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,864,689 - 253,898,413 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	267,281,786 - 267,315,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	267,281,764 - 267,315,729 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	252,875,485 - 252,909,299 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	253,140,058 - 253,173,872 (-)	NCBI
Celera	1	242,163,081 - 242,196,275 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cerebroretinal Microangiopathy with Calcifications and Cysts (ISO)

Cerebroretinal Microangiopathy with Calcifications and Cysts 2 (ISO)

genetic disease (ISO)

idiopathic pulmonary fibrosis (ISO)

Lung Neoplasms (ISO)

melanoma (ISO)

ovarian carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

gentamycin (EXP)

indometacin (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

p-toluidine (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sotorasib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trametinib (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of telomere maintenance via telomerase (IEA,ISO)

positive regulation of DNA replication (IEA,ISO,ISS)

telomere capping (IEA)

telomere maintenance (ISO,ISS)

telomere maintenance via telomere lengthening (IBA,IEA,ISO,ISS)

Cellular Component

chromosome, telomeric region (IBA,ISO,ISS)

CST complex (IBA,IEA,ISO)

fibrillar center (IEA,ISO)

intermediate filament cytoskeleton (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO,ISS)

Molecular Function

protein binding (ISO)

single-stranded DNA binding (IBA,ISO,ISS)

single-stranded telomeric DNA binding (IEA,ISO,ISS)

telomeric DNA binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The effect on melanoma risk of genes previously associated with telomere length.	Iles MM, etal., J Natl Cancer Inst. 2014 Sep 17;106(10). pii: dju267. doi: 10.1093/jnci/dju267. Print 2014 Oct.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:19119139	PMID:19135898	PMID:19648609	PMID:19854130	PMID:22763445	PMID:30361391

Genomics

Comparative Map Data

Stn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	256,336,916 - 256,371,143 (-)	NCBI		GRCr8
mRatBN7.2	1	246,391,311 - 246,429,844 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	246,395,613 - 246,429,531 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	254,523,111 - 254,556,301 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	261,216,742 - 261,250,525 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	253,864,689 - 253,898,413 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	267,281,786 - 267,315,714 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	267,281,764 - 267,315,729 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	252,875,485 - 252,909,299 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	253,140,058 - 253,173,872 (-)	NCBI
Celera	1	242,163,081 - 242,196,275 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

STN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	103,877,569 - 103,918,184 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	103,856,806 - 103,918,332 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	105,637,327 - 105,677,942 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	105,632,290 - 105,667,956 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	105,632,291 - 105,667,956	NCBI
Celera	10	99,377,215 - 99,418,065 (-)	NCBI		Celera
Cytogenetic Map	10	q24.33	NCBI
HuRef	10	99,268,253 - 99,309,098 (-)	NCBI		HuRef
CHM1_1	10	105,921,069 - 105,961,741 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	104,764,812 - 104,805,419 (-)	NCBI		T2T-CHM13v2.0

Stn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	47,489,470 - 47,534,284 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	47,489,472 - 47,525,946 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	47,501,031 - 47,545,845 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	47,501,033 - 47,537,507 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	47,575,538 - 47,611,510 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	47,554,359 - 47,590,331 (-)	NCBI		MGSCv36	mm8
Celera	19	48,260,153 - 48,296,160 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	39.64	NCBI

Stn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	6,748,234 - 6,784,762 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955485	6,748,682 - 6,784,119 (+)	NCBI	ChiLan1.0	ChiLan1.0

STN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	115,743,244 - 115,853,180 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	115,748,572 - 115,810,026 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	100,456,589 - 100,518,010 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	103,937,298 - 103,977,847 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	103,942,422 - 103,977,847 (-)	Ensembl	panpan1.1		panPan2

STN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	16,203,607 - 16,246,468 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	16,204,073 - 16,246,058 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	16,370,945 - 16,417,425 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	16,680,396 - 16,722,769 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	16,680,064 - 16,722,751 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	16,229,167 - 16,271,519 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	16,257,383 - 16,299,737 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	16,395,850 - 16,438,460 (-)	NCBI		UU_Cfam_GSD_1.0

Stn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	30,627,520 - 30,663,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936600	2,230,705 - 2,266,968 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936600	2,230,754 - 2,266,956 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	114,810,201 - 114,851,025 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	114,808,217 - 114,851,130 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	124,724,030 - 124,766,460 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	96,919,584 - 96,967,941 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	96,915,951 - 96,967,394 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	58,037,595 - 58,085,843 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624831	2,999,800 - 3,030,443 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624831	2,999,061 - 3,030,447 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Stn1
213 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	75
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000027614
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	195804352	257091168	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	195804352	257091168	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	201554356	246554356	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	201554356	246554356	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	201554356	246554356	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	201554356	246554356	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	201554356	246554356	Rat
10059587	Bw173	Body weight QTL 173	3.23	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	1	202069611	247069611	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	206081677	251081677	Rat
1357399	Bw45	Body weight QTL 45	3.05		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	1	206329708	251329708	Rat
1357404	Bw42	Body weight QTL 42	4.49	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	206329708	251329708	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	213707201	252085212	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	218753816	256448513	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	0.00000487	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	245907761	257976495	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	36	39	23	19	23	1	2	72	33	41	11	1
Low	1	7	18	18		18	7	9	2	2			7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000027614 ⟹ ENSRNOP00000027614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	246,395,613 - 246,429,531 (-)	Ensembl
Rnor_6.0 Ensembl	1	267,281,764 - 267,315,729 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099473 ⟹ ENSRNOP00000087203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	246,400,880 - 246,429,531 (-)	Ensembl

RefSeq Acc Id:

NM_001011943 ⟹ NP_001011943

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,922 - 256,370,736 (-)	NCBI
mRatBN7.2	1	246,395,613 - 246,429,428 (-)	NCBI
Rnor_6.0	1	267,281,794 - 267,315,588 (-)	NCBI
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI
RGSC_v3.4	1	252,875,485 - 252,909,299 (-)	RGD
Celera	1	242,163,081 - 242,196,275 (-)	RGD

Sequence:

show sequence

GCTCCTGCTCCGGGAGAGGCTGTAAACCGCTCTGATTCTGCCTCCTTTTCCTTTCCTCCGCTCT
TCCCAGAAGGTGAAATGTCGAAGAGTGGATAGACACACCTCCAGGGCCCAAAGTCCACGGCCAC
AGGGGCGCCATTCACTCTCCGGACTCATTCGTTAAAACTCCTTTGGGAGTCTTGGCTCAGGGTT
AGCAGATGCCAGAACCTTGCCTTTTGATGCAGTGCGAATCCAGTCCAAAAGAAGAGGAGATCCC
GTCCCTCTTTTGGGGTCTGGATCCCGTGTTTCTAGCCTTTGCAAAACTCTACATCAAGGACATC
CTGGAGATGAAGGAGTCCCAACAAGTGCCAGGCATGTATTTTTACAATGGACATCCAATAAGAC
GGGTGGATATCATGGGAGCTGTCATCAGTGTGAAAGAGAGAGAGACTTTCTACAGCTATGGAGT
GGATGACGCCACAGGGGTTATAAACTGTGTGTGCTGGAAAAGGCCAAGCAATGCCGAGTCTTCA
TCAGACCCAGCTATTCTGAGCACTTCGAGAGAACTCAGCATGACCTCACAGCTTAAGAAACTGC
AGGAGACCATTGAGCAGAAAACCAAGATCGGGATTGGGGATATCATCCGAGTCCGAGGCTACGT
GCGTATGTTCCGAGAAGAGCGAGAGATCTGTGCCACCATTTATTATAAGGTGGACGATCCAGTG
TGGAACATGCAAATTGCAAGGATGCTTGAGCTGCCAGAGCTCTACAAGAAGGTGTATGACCAGC
CCTTCCGGAACCCAGCCCTAAAGGAGGAAGAGGCACTAAACAGTAAAGACACTTTGGATCTCGC
TGGCCTCACGGCTTTGTTGAGTGAGAAAGTTAAAGAATTTCTCCAGGAGAAGAAAGTGCAAAGC
TTCTACCAGAAGGAGCTGGAAATGGTGGAGCCCTTGCAGTCTCTGGCCAGTCAGCCCGTGACCC
ACAGCACGTGCTCGGACCAAGTGGAGTTAAAGAACGACGCCGCTTCTGACATACACAGTGTGTT
TAAGAATGCTCTGCACCTGCTTCAGGAAAAGGGGTTCGTGTTCCAGAGAGACGGTGGCTCCGAT
AAGCTGTACTATGTTACCAGTAAGGACAAAGACCTGCACCAGAAGATCTACCAGATCATTAAGG
AAGACTGTCAGAAACCAAATCTGTGGTGCATGCTGCCTCAGGAGGCCTGGAGAGGGACTGAGGA
AGGCCTGGCCGTCGTGGTCACACTTAGTGTCTGCCTGCCCTTGCCCGTAGATGTGGAGAAGGGC
TGCCACTTGATGCACGTCCTGAACTGCGTGCTCCTCAACCTCCGCTGGGACCTGAACAAGGCTG
TGCTGCAGCAGGTGCTGGAGCTCCTGGAGGACCAGAGCGACATTGTGAGTACTGGAGACCACTA
CTACACGGCCTTCTGAGCAGAGCCACGGAGAGGCAGCAGGCAGCTTTACCCCAGGTTCTGCTCC
CAGGCGTTGTAGAGACTTATTTGTGTATAATCCTCTAATAAAGTCTGATACAGCCACAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231472 ⟹ XP_006231534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,916 - 256,371,116 (-)	NCBI
mRatBN7.2	1	246,391,311 - 246,429,828 (-)	NCBI
Rnor_6.0	1	267,281,786 - 267,315,714 (-)	NCBI
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI

Sequence:

show sequence

GGGGGCGTGGCCTCAGCGGGAGTGGCTGGCGGTAGCCAGGCGCGGGTGGCGGGAAGGAAATACG
CCGGCGGGAGTGTGCTAGCTTCCTTCTCGCAACCGGAACTATTTCGGCAATCTTGGCCAACTGC
TCCTGCTCCGGGAGAGGCTGTAAACCGCTCTGATTCTGCCTCCTTTTCCTTTCCTCCGCTCTTC
CCAGAAGGTGAAATGTCGAAGAGTGGATAGACACACCTCCAGGGCCCAAAGTCCACGGCCACAG
GGGCGCCATTCACTCTCCGGACTCATTCGTTAAAACTCCTTTGGGAGTCTTGGCTCAGGGTTAG
CAGATGCCAGAACCTTGCCTTTTGATGCAGTGCGAATCCAGTCCAAAAGAAGAGGAGATCCCGT
CCCTCTTTTGGGGTCTGGATCCCGTGTTTCTAGCCTTTGCAAAACTCTACATCAAGGACATCCT
GGAGATGAAGGAGTCCCAACAAGTGCCAGGCATGTATTTTTACAATGGACATCCAATAAGACGG
GTGGATATCATGGGAGCTGTCATCAGTGTGAAAGAGAGAGAGACTTTCTACAGCTATGGAGTGG
ATGACGCCACAGGGGTTATAAACTGTGTGTGCTGGAAAAGGCCAAGCAATGCCGAGTCTTCATC
AGACCCAGCTATTCTGAGCACTTCGAGAGAACTCAGCATGACCTCACAGCTTAAGAAACTGCAG
GAGACCATTGAGCAGAAAACCAAGATCGGGATTGGGGATATCATCCGAGTCCGAGGCTACGTGC
GTATGTTCCGAGAAGAGCGAGAGATCTGTGCCACCATTTATTATAAGGTGGACGATCCAGTGTG
GAACATGCAAATTGCAAGGATGCTTGAGCTGCCAGAGCTCTACAAGAAGGTGTATGACCAGCCC
TTCCGGAACCCAGCCCTAAAGGAGGAAGAGGCACTAAACAGTAAAGACACTTTGGATCTCGCTG
GCCTCACGGCTTTGTTGAGTGAGAAAGTTAAAGAATTTCTCCAGGAGAAGAAAGTGCAAAGCTT
CTACCAGAAGGAGCTGGAAATGGTGGAGCCCTTGCAGTCTCTGGCCAGTCAGCCCGTGACCCAC
AGCACGTGCTCGGACCAAGTGGAGTTAAAGAACGACGCCGCTTCTGACATACACAGTGTGTTTA
AGAATGCTCTGCACCTGCTTCAGGAAAAGGGGTTCGTGTTCCAGAGAGACGGTGGCTCCGATAA
GCTGTACTATGTTACCAGTAAGGACAAAGACCTGCACCAGAAGATCTACCAGATCATTAAGGAA
GACTGTCAGAAACCAAATCATGTGGAGAAGGGCTGCCACTTGATGCACGTCCTGAACTGCGTGC
TCCTCAACCTCCGCTGGGACCTGAACAAGGCTGTGCTGCAGCAGGTGCTGGAGCTCCTGGAGGA
CCAGAGCGACATTGTGAGTACTGGAGACCACTACTACACGGCCTTCTGAGCAGAGCCACGGAGA
GGCAGCAGGCAGCTTTACCCCAGGTTCTGCTCCCAGGCGTTGTAGAGACTTATTTGTGTATAAT
CCCCTAATAAAGTCTGATACAGCCACAGGAAAATA

hide sequence

RefSeq Acc Id:

XM_006231474 ⟹ XP_006231536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,916 - 256,371,123 (-)	NCBI
mRatBN7.2	1	246,391,311 - 246,429,835 (-)	NCBI
Rnor_6.0	1	267,281,788 - 267,315,714 (-)	NCBI
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI

Sequence:

show sequence

GGGGGCGTGGCCTCAGCGGGAGTGGCTGGCGGTAGCCAGGCGCGGGTGGCGGGAAGGAAATACG
CCGGCGGGAGTGTGCTAGCTTCCTTCTCGCAACCGGAACTATTTCGGCAATCTTGGCCAACTGC
TCCTGCTCCGGGAGAGGCTGTAAACCGCTCTGATTCTGCCTCCTTTTCCTTTCCTCCGCTCTTC
CCAGAAGGTGAAATGTCGAAGAGTGGATAGACACACCTCCAGGGCCCAAAGTCCACGGCCACAG
GGGCGCCATTCACTCTCCGGACTCATTCGTTAAAACTCCTTTGGGAGTCTTGGCTCAGGGTTAG
CAGATGCCAGAACCTTGCCTTTTGATGCAGTGCGAATCCAGTCCAAAAGAAGAGGAGATCCCGT
CCCTCTTTTGGGGTCTGGATCCCGTGTTTCTAGCCTTTGCAAAACTCTACATCAAGGACATCCT
GGAGATGAAGGAGTCCCAACAAGTGCCAGGCATGTATTTTTACAATGGACATCCAATAAGACGG
GTGGATATCATGGGAGCTGTCATCAGTGTGAAAGAGAGAGAGACTTTCTACAGCTATGGAGTGG
ATGACGCCACAGGGGTTATAAACTGTGTGTGCTGGAAAAGGCCAAGCAATGCCGAGTCTTCATC
AGACCCAGCTATTCTGAGCACTTCGAGAGAACTCAGCATGACCTCACAGCTTAAGAAACTGCAG
GAGACCATTGAGCAGAAAACCAAGATCGGGATTGGGGATATCATCCGAGTCCGAGGCTACGTGC
GTATGTTCCGAGAAGAGCGAGAGATCTGTGCCACCATTTATTATAAGGTGGACGATCCAGTGTG
GAACATGCAAATTGCAAGGATGCTTGAGCTGCCAGAGCTCTACAAGAAGGTGTATGACCAGCCC
TTCCGGAACCCAGCCCTAAAGGAGGAAGAGGCACTAAATAAAGACACTTTGGATCTCGCTGGCC
TCACGGCTTTGTTGAGTGAGAAAGTTAAAGAATTTCTCCAGGAGAAGAAAGTGCAAAGCTTCTA
CCAGAAGGAGCTGGAAATGGTGGAGCCCTTGCAGTCTCTGGCCAGTCAGCCCGTGACCCACAGC
ACGTGCTCGGACCAAGTGGAGTTAAAGAACGACGCCGCTTCTGACATACACAGTGTGTTTAAGA
ATGCTCTGCACCTGCTTCAGGAAAAGGGGTTCGTGTTCCAGAGAGACGGTGGCTCCGATAAGCT
GTACTATGTTACCAGTAAGGACAAAGACCTGCACCAGAAGATCTACCAGATCATTAAGGAAGAC
TGTCAGAAACCAAATCATGTGGAGAAGGGCTGCCACTTGATGCACGTCCTGAACTGCGTGCTCC
TCAACCTCCGCTGGGACCTGAACAAGGCTGTGCTGCAGCAGGTGCTGGAGCTCCTGGAGGACCA
GAGCGACATTGTGAGTACTGGAGACCACTACTACACGGCCTTCTGAGCAGAGCCACGGAGAGGC
AGCAGGCAGCTTTACCCCAGGTTCTGCTCCCAGGCGTTGTAGAGACTTATTTGTGTATAATCCC
CTAATAAAGTCTGATACAGCCACAGGAAAA

hide sequence

RefSeq Acc Id:

XM_006231475 ⟹ XP_006231537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,916 - 256,359,972 (-)	NCBI
mRatBN7.2	1	246,391,311 - 246,419,371 (-)	NCBI
Rnor_6.0	1	267,281,786 - 267,306,875 (-)	NCBI
Rnor_5.0	1	274,714,582 - 274,748,515 (-)	NCBI

Sequence:

show sequence

CTTTGCTTTATTTTACCAAAGATGTTGGTCCTCGTTTTCTCCGACAACTCAGCAAGCATGCGCA
GTGCTCCTCCAGCATGCCCAGCTGTGGGCATGCGCATTGTGTGTGATACGATACTCTTGCTGTT
CTCTGTGCCCCGTGATAACATAATCTTGTCTTTCAGTTACAAAGCACGTTTCACATTCATCGTT
CCATATTATTCTCCCTGTTTTCTTTAGAAATAGTTATGGAAATACTATTAATAGAAAATGGACA
ACTATTCCCATTTTGCAGGTGAGGAAACTGACTCACTCAGCTCTCTCAAGGCTGTGTTGAGATA
GGCTGATGAGCCCATTTGACTGCTAACTGGTCCCAGCATGCTGTGCTGTCAGCATAGAGCTCAA
AATAGCTTTCTCCAGGCTCCCAAACCCAGTCATCTGGAGTTAATGTTTTCAGATCAAATAAGAG
ACCGTTGGGGACTTCAGTTCTGGCCCTAGAATTGGATCTGATCTGCCTTGTGACATAAATGCCC
TTCATGTAACTCACTTTCCCACTGTGGAAGCGTTTCAGATGTGTTTGGCTCTTCCCTAAGAAGA
CTTTCCCTCCAAGTGGGTGTCGTGAGAGCATGACACATCTGTGGGCTGCAGGAAGGCAGCCGTG
TGGAAGTAATTAGGAGCAGAAAGGCTGTCTGCACTTAGTTCTTGTGTGGCCAGCTGAAACAGAG
AGCCACTTACCTCCTGCTGGATCTACAGGCCTAGAGTGGCTCTCCCTCCTGTGCCTGCTCCCTG
ACTCACTGCAGGTGTGGACTGTGTCTCCGCCCACACTGACTCCTAGTGTCACCAGAGGGAAGGA
TGTGGTCTGGCTTTGTAATGGGTCTCCTCTCCTCAGTCACTCAGCAGCAGGCCTCAGGAACTGC
TTCATGCTCTGCAGAGAGGCCAGAGAAGTCAGGGCCTGGTGGCAGCGCCCCTAGTTTACAGAGC
CCTTGGCAGCAGCTTGAGCTCTCGTGTGGTTCTAAAGATGCTCAGGTTAGACCTGGATAGCCTC
ACGTGCCCTAGAACAAGTGTTTACTCATTTGCTGCTAGTCTTGCTTCCAATCTAAACACTTCCA
GCCAGATGCAATGGTTCCCGCCTGTAATCCCTAGTGCAGCGGAGGTGAAGGATTCCTGCATGGT
AGAAGCCAGCCAGGGCTAGGTAGTGAGTCCCAGCCAGCTATGGAGTTAGTCTCTTCATTTTTGA
AATCTACCTGACAGTTAATGTTCACATTGAATGAAGGCTTTTTCTTCCATACTTCAAAGGGTCT
ACTATTAGCATTTAGCGTGTTAAAATAGTTTCTGTGGAAGTGTACTGTTTCATTTTTATACATG
TAAGGTTTAGAAGGTATATGCAATTTGTGTTTTACAGAGCAACATGTGTACCTTTCAACATTGA
GGACCTAGGTCCTGTCCTAACACGTTAATCTCATGTACTACATTATTACAATTCAGTTAACCAG
CTGCAGACTCATGAACATTTACGGTTTTCCCATTTTCAATGTTATAAGCACGCACTTCAGTGAG
CAACCTTATCCTAACTATAGATATCTGTGCACTTGTTCTGGTTTTCTCTGTGGAATTCACTAGA
AGGACTCGTCAAGTCCAAGGGTGCATGTGTGCGCTTGCTGTTTAGAAATGAGCTGCTGACTTCA
CTTCCTCCAGTAGCCAATGAGGGTATCAGTATTTTGTTGTGTGGTTTTGTATTGTCTCCCCAGT
ACAAAAAAACCCAGGACCCAGGATGCTACTCGATAAGTGCTGTACAACTGAGCCCTGTCCTAGC
CCTGGCTACCAGTGTTTAACCTGTCAATTTAGCAGCTGAGAGATTATGTAATCTTGATTTTTTC
ATGGCAGCTAGTGGGTTTAGCACATGCGTATTTCTCGCTGACCACTACACATTTCCCACGCATC
GCATATCCCTTTTCCTTGGTACTGCTTCTCTTGGGCTTGGTCTTTCTCACTAGTTCCTAGGAGC
TCTTAGTATATTAAAGCAGTAACCATATATTGGAAAAGTTGCTGTTATTGGTTTAGGCTACCAA
ATGTATCAAACTTTTTTAAATGAGTTACAATTTTCAGATTCTGCTTTAGAAAGTCTAAATCCAG
AGCCGGAAGACCAATGTCTTCTTCTCACTTTATGTTAACAAATAAACTTATATTTACTATAGAG
AATAATCCTCTTTCTGCCGAAATTTAATCCAACAATAAAACATTTTCCCTTATATTCTATATTA
CATGGACCTTCGGCCTTTACCACAGTCTGCTGTTTCGTTTCATTTGTTTTATTTTGTTTCAGTT
ATGAGGCCCACTACTTTGTGCTTAGCAAGCTATGTTTGGAGGTTGTCAGAATTCAGACAGAATT
CAGCAGACATCTTCAAGTTCCTCCATAATCACAGATCCAAGTCTCATGGAAACTGATTTTTTTT
TCCTTTTGGTGCTATAAATAAAGCAAGGCAGAGCAGTTCTATTTTTGTGGCCAGGGTATAATTA
TTTTCTGTTAGGAAAATAAAGCCAAGTCCTGTGATGAGCTTGATGCCCTCCCTTAGATCCCTGC
AGAGGTGAGGACTGGGCTGAGACCTTTTTACAGAGAACCCCTGGGCCAAACGATGTGGGCCACT
CTGCTCGGGGAATGAGCTAGCTAACAGAAGAAGAAATGACAGAAGTTGGATCCAGAGTGCCAGT
GCCACAGACCACAGGCCACATGGCGCTTCCTTGTTTGAGAGAAAGAGAGAAGAAAGTTATAGAT
GTGGGCACTCACTCGGGTTGTTTTGCATCTAACATTACCCACTGTTACCAGAGTAGATATGATT
CGTGACTGCCATAGAGGTAGCCTGAGGGAAACCTTGGATGTATCCATTGGACTCATGTGTGACA
TGCTCACAGTGGATGACGCCACAGGGGTTATAAACTGTGTGTGCTGGAAAAGGCCAAGCAATGC
CGAGTCTTCATCAGACCCAGCTATTCTGAGCACTTCGAGAGAACTCAGCATGACCTCACAGCTT
AAGAAACTGCAGGAGACCATTGAGCAGAAAACCAAGATCGGGATTGGGGATATCATCCGAGTCC
GAGGCTACGTGCGTATGTTCCGAGAAGAGCGAGAGATCTGTGCCACCATTTATTATAAGGTGGA
CGATCCAGTGTGGAACATGCAAATTGCAAGGATGCTTGAGCTGCCAGAGCTCTACAAGAAGGTG
TATGACCAGCCCTTCCGGAACCCAGCCCTAAAGGAGGAAGAGGCACTAAACAGTAAAGACACTT
TGGATCTCGCTGGCCTCACGGCTTTGTTGAGTGAGAAAGTTAAAGAATTTCTCCAGGAGAAGAA
AGTGCAAAGCTTCTACCAGAAGGAGCTGGAAATGGTGGAGCCCTTGCAGTCTCTGGCCAGTCAG
CCCGTGACCCACAGCACGTGCTCGGACCAAGTGGAGTTAAAGAACGACGCCGCTTCTGACATAC
ACAGTGTGTTTAAGAATGCTCTGCACCTGCTTCAGGAAAAGGGGTTCGTGTTCCAGAGAGACGG
TGGCTCCGATAAGCTGTACTATGTTACCAGTAAGGACAAAGACCTGCACCAGAAGATCTACCAG
ATCATTAAGGAAGACTGTCAGAAACCAAATCATGTGGAGAAGGGCTGCCACTTGATGCACGTCC
TGAACTGCGTGCTCCTCAACCTCCGCTGGGACCTGAACAAGGCTGTGCTGCAGCAGGTGCTGGA
GCTCCTGGAGGACCAGAGCGACATTGTGAGTACTGGAGACCACTACTACACGGCCTTCTGAGCA
GAGCCACGGAGAGGCAGCAGGCAGCTTTACCCCAGGTTCTGCTCCCAGGCGTTGTAGAGACTTA
TTTGTGTATAATCCCCTAATAAAGTCTGATACAGCCACAGGAAAATA

hide sequence

RefSeq Acc Id:

XM_017589043 ⟹ XP_017444532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,916 - 256,371,123 (-)	NCBI
mRatBN7.2	1	246,391,311 - 246,429,835 (-)	NCBI
Rnor_6.0	1	267,281,786 - 267,315,714 (-)	NCBI

Sequence:

show sequence

GGGGGCGTGGCCTCAGCGGGAGTGGCTGGCGGTAGCCAGGCGCGGGTGGCGGGAAGGAAATACG
CCGGCGGGAGTGTGCTAGCTTCCTTCTCGCAACCGGAACTATTTCGGCAATCTTGGCCAACTGC
TCCTGCTCCGGGAGAGGCTGTAAACCGCTCTGATTCTGCCTCCTTTTCCTTTCCTCCGCTCTTC
CCAGAAGAGTCTTGGCTCAGGGTTAGCAGATGCCAGAACCTTGCCTTTTGATGCAGTGCGAATC
CAGTCCAAAAGAAGAGGAGATCCCGTCCCTCTTTTGGGGTCTGGATCCCGTGTTTCTAGCCTTT
GCAAAACTCTACATCAAGGACATCCTGGAGATGAAGGAGTCCCAACAAGTGCCAGGCATGTATT
TTTACAATGGACATCCAATAAGACGGGTGGATATCATGGGAGCTGTCATCAGTGTGAAAGAGAG
AGAGACTTTCTACAGCTATGGAGTGGATGACGCCACAGGGGTTATAAACTGTGTGTGCTGGAAA
AGGCCAAGCAATGCCGAGTCTTCATCAGACCCAGCTATTCTGAGCACTTCGAGAGAACTCAGCA
TGACCTCACAGCTTAAGAAACTGCAGGAGACCATTGAGCAGAAAACCAAGATCGGGATTGGGGA
TATCATCCGAGTCCGAGGCTACGTGCGTATGTTCCGAGAAGAGCGAGAGATCTGTGCCACCATT
TATTATAAGGTGGACGATCCAGTGTGGAACATGCAAATTGCAAGGATGCTTGAGCTGCCAGAGC
TCTACAAGAAGGTGTATGACCAGCCCTTCCGGAACCCAGCCCTAAAGGAGGAAGAGGCACTAAA
CAGTAAAGACACTTTGGATCTCGCTGGCCTCACGGCTTTGTTGAGTGAGAAAGTTAAAGAATTT
CTCCAGGAGAAGAAAGTGCAAAGCTTCTACCAGAAGGAGCTGGAAATGGTGGAGCCCTTGCAGT
CTCTGGCCAGTCAGCCCGTGACCCACAGCACGTGCTCGGACCAAGTGGAGTTAAAGAACGACGC
CGCTTCTGACATACACAGTGTGTTTAAGAATGCTCTGCACCTGCTTCAGGAAAAGGGGTTCGTG
TTCCAGAGAGACGGTGGCTCCGATAAGCTGTACTATGTTACCAGTAAGGACAAAGACCTGCACC
AGAAGATCTACCAGATCATTAAGGAAGACTGTCAGAAACCAAATCATGTGGAGAAGGGCTGCCA
CTTGATGCACGTCCTGAACTGCGTGCTCCTCAACCTCCGCTGGGACCTGAACAAGGCTGTGCTG
CAGCAGGTGCTGGAGCTCCTGGAGGACCAGAGCGACATTGTGAGTACTGGAGACCACTACTACA
CGGCCTTCTGAGCAGAGCCACGGAGAGGCAGCAGGCAGCTTTACCCCAGGTTCTGCTCCCAGGC
GTTGTAGAGACTTATTTGTGTATAATCCCCTAATAAAGTCTGATACAGCCACAGGAAAATA

hide sequence

RefSeq Acc Id:

XM_039109088 ⟹ XP_038965016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,336,916 - 256,371,123 (-)	NCBI
mRatBN7.2	1	246,391,311 - 246,429,836 (-)	NCBI

RefSeq Acc Id:

XM_039109099 ⟹ XP_038965027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,348,741 - 256,371,143 (-)	NCBI
mRatBN7.2	1	246,407,177 - 246,429,844 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011943	(Get FASTA)	NCBI Sequence Viewer
	XP_006231534	(Get FASTA)	NCBI Sequence Viewer
	XP_006231536	(Get FASTA)	NCBI Sequence Viewer
	XP_006231537	(Get FASTA)	NCBI Sequence Viewer
	XP_017444532	(Get FASTA)	NCBI Sequence Viewer
	XP_038965016	(Get FASTA)	NCBI Sequence Viewer
	XP_038965027	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79096	(Get FASTA)	NCBI Sequence Viewer
	EDL94380	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027614
	ENSRNOP00000027614.6
	ENSRNOP00000087203.1
GenBank Protein	Q6AYD2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011943 ⟸ NM_001011943

- UniProtKB:

Q6AYD2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPEPCLLMQCESSPKEEEIPSLFWGLDPVFLAFAKLYIKDILEMKESQQVPGMYFYNGHPIRRV
DIMGAVISVKERETFYSYGVDDATGVINCVCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQE
TIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKVDDPVWNMQIARMLELPELYKKVYDQPF
RNPALKEEEALNSKDTLDLAGLTALLSEKVKEFLQEKKVQSFYQKELEMVEPLQSLASQPVTHS
TCSDQVELKNDAASDIHSVFKNALHLLQEKGFVFQRDGGSDKLYYVTSKDKDLHQKIYQIIKED
CQKPNLWCMLPQEAWRGTEEGLAVVVTLSVCLPLPVDVEKGCHLMHVLNCVLLNLRWDLNKAVL
QQVLELLEDQSDIVSTGDHYYTAF

hide sequence

RefSeq Acc Id:	XP_006231534 ⟸ XM_006231472
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHR9 (UniProtKB/TrEMBL), A6JHQ6 (UniProtKB/TrEMBL), A0A8I6A2S8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEPCLLMQCESSPKEEEIPSLFWGLDPVFLAFAKLYIKDILEMKESQQVPGMYFYNGHPIRRV DIMGAVISVKERETFYSYGVDDATGVINCVCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQE TIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKVDDPVWNMQIARMLELPELYKKVYDQPF RNPALKEEEALNSKDTLDLAGLTALLSEKVKEFLQEKKVQSFYQKELEMVEPLQSLASQPVTHS TCSDQVELKNDAASDIHSVFKNALHLLQEKGFVFQRDGGSDKLYYVTSKDKDLHQKIYQIIKED CQKPNHVEKGCHLMHVLNCVLLNLRWDLNKAVLQQVLELLEDQSDIVSTGDHYYTAF hide sequence

RefSeq Acc Id:

XP_006231537 ⟸ XM_006231475

- Peptide Label:

isoform X3

- Sequence:

show sequence

MWALTRVVLHLTLPTVTRVDMIRDCHRGSLRETLDVSIGLMCDMLTVDDATGVINCVCWKRPSN
AESSSDPAILSTSRELSMTSQLKKLQETIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKV
DDPVWNMQIARMLELPELYKKVYDQPFRNPALKEEEALNSKDTLDLAGLTALLSEKVKEFLQEK
KVQSFYQKELEMVEPLQSLASQPVTHSTCSDQVELKNDAASDIHSVFKNALHLLQEKGFVFQRD
GGSDKLYYVTSKDKDLHQKIYQIIKEDCQKPNHVEKGCHLMHVLNCVLLNLRWDLNKAVLQQVL
ELLEDQSDIVSTGDHYYTAF

hide sequence

RefSeq Acc Id:	XP_006231536 ⟸ XM_006231474
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A2S8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEPCLLMQCESSPKEEEIPSLFWGLDPVFLAFAKLYIKDILEMKESQQVPGMYFYNGHPIRRV DIMGAVISVKERETFYSYGVDDATGVINCVCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQE TIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKVDDPVWNMQIARMLELPELYKKVYDQPF RNPALKEEEALNKDTLDLAGLTALLSEKVKEFLQEKKVQSFYQKELEMVEPLQSLASQPVTHST CSDQVELKNDAASDIHSVFKNALHLLQEKGFVFQRDGGSDKLYYVTSKDKDLHQKIYQIIKEDC QKPNHVEKGCHLMHVLNCVLLNLRWDLNKAVLQQVLELLEDQSDIVSTGDHYYTAF hide sequence

RefSeq Acc Id:	XP_017444532 ⟸ XM_017589043
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHR9 (UniProtKB/TrEMBL), A6JHQ6 (UniProtKB/TrEMBL), A0A8I6A2S8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEPCLLMQCESSPKEEEIPSLFWGLDPVFLAFAKLYIKDILEMKESQQVPGMYFYNGHPIRRV DIMGAVISVKERETFYSYGVDDATGVINCVCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQE TIEQKTKIGIGDIIRVRGYVRMFREEREICATIYYKVDDPVWNMQIARMLELPELYKKVYDQPF RNPALKEEEALNSKDTLDLAGLTALLSEKVKEFLQEKKVQSFYQKELEMVEPLQSLASQPVTHS TCSDQVELKNDAASDIHSVFKNALHLLQEKGFVFQRDGGSDKLYYVTSKDKDLHQKIYQIIKED CQKPNHVEKGCHLMHVLNCVLLNLRWDLNKAVLQQVLELLEDQSDIVSTGDHYYTAF hide sequence

RefSeq Acc Id:

ENSRNOP00000027614 ⟸ ENSRNOT00000027614

RefSeq Acc Id:	XP_038965016 ⟸ XM_039109088
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHR9 (UniProtKB/TrEMBL), A6JHQ6 (UniProtKB/TrEMBL), A0A8I6A2S8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965027 ⟸ XM_039109099
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSRNOP00000087203 ⟸ ENSRNOT00000099473

Protein Domains

CST complex subunit Stn1 N-terminal Stn1 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYD2-F1-model_v2	AlphaFold	Q6AYD2	1-408	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690979

Promoter ID:

EPDNEW_R1503

Type:

initiation region

Name:

Stn1_1

Description:

STN1, CST complex subunit

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	267,315,628 - 267,315,688	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305637	AgrOrtholog
BioCyc Gene	G2FUF-55477	BioCyc
Ensembl Genes	ENSRNOG00000020376	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027614.8	UniProtKB/TrEMBL
	ENSRNOT00000099473.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.10.10.980	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.40.50.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7124109	IMAGE-MGC_LOAD
InterPro	CST_STN1_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CST_Stn1_N_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RFA2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Stn1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Stn1_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:294025	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94071	IMAGE-MGC_LOAD
NCBI Gene	294025	ENTREZGENE
PANTHER	CST COMPLEX SUBUNIT STN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR13989	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Stn1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	STN1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Stn1	PhenoGen
PIRSF	UCP036950	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020376	RatGTEx
Superfamily-SCOP	SSF46785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50249	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHR9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2S8	ENTREZGENE, UniProtKB/TrEMBL
	A6JHQ6	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYD2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-02	Stn1	STN1 subunit of CST complex	Stn1	STN1, CST complex subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-01-17	Stn1	STN1, CST complex subunit	Obfc1	oligonucleotide/oligosaccharide-binding fold containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Obfc1	oligonucleotide/oligosaccharide-binding fold containing 1	Obfc1_predicted	oligonucleotide/oligosaccharide-binding fold containing 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Obfc1_predicted	oligonucleotide/oligosaccharide-binding fold containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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