Htr7 (5-hydroxytryptamine receptor 7) - Rat Genome Database

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Gene: Htr7 (5-hydroxytryptamine receptor 7) Rattus norvegicus
Analyze
Symbol: Htr7
Name: 5-hydroxytryptamine receptor 7
RGD ID: 71034
Description: Exhibits G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Involved in several processes, including adenylate cyclase-activating serotonin receptor signaling pathway; detection of mechanical stimulus involved in sensory perception of pain; and modulation of chemical synaptic transmission. Localizes to several cellular components, including integral component of synaptic membrane; rough endoplasmic reticulum; and synaptic vesicle. Used to study amnestic disorder; anxiety disorder; childhood absence epilepsy; cognitive disorder; and migraine. Biomarker of irritable bowel syndrome. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7); PARTICIPATES IN serotonin signaling pathway via receptors engaging G alphas protein family; calcium/calcium-mediated signaling pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 5-HT-7; 5-HT-X; 5-HT7; 5-hydroxytryptamine (serotonin) receptor 7; 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled; 5Ht7; GPRFO; high affinity serotonin receptor (5HT7); high affinity serotonin receptor (5HT7) gene; LOC103694905; serotonin receptor 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Htr7em1Geh   Htr7em1Msu  
Genetic Models: SD-Htr7em1Msu WI-Htr7em1Geh
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21233,636,442 - 233,761,063 (-)NCBI
Rnor_6.0 Ensembl1254,547,620 - 254,671,778 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01254,547,964 - 254,671,811 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01261,759,122 - 261,879,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,136,279 - 240,260,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11240,308,574 - 240,434,503 (-)NCBI
Celera1230,737,463 - 230,859,847 (-)NCBICelera
Cytogenetic Map1q53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3',5'-cyclic AMP  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
5-carboxamidotryptamine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
8-OH-DPAT  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
bromocriptine  (ISO)
buta-1,3-diene  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
clozapine  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyproheptadine  (ISO)
decabromodiphenyl ether  (EXP)
dextran sulfate  (ISO)
diazinon  (EXP)
dioxygen  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
furan  (EXP)
glycidol  (EXP)
ketanserin  (ISO)
L-methionine  (ISO)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
lisuride  (ISO)
lurasidone hydrochloride  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
mesulergine  (ISO)
metergoline  (ISO)
methiothepin  (ISO)
mianserin  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
O-methylserotonin  (ISO)
paliperidone palmitate  (ISO)
PD 0325901  (ISO)
risperidone  (ISO)
ritanserin  (ISO)
rotenone  (ISO)
serotonin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
spiperone  (ISO)
tamoxifen  (ISO)
testosterone undecanoate  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
vortioxetine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. Amaya-Castellanos E, etal., Pharmacol Biochem Behav. 2011 Oct;99(4):591-7. Epub 2011 Jun 15.
2. Brenchat A, etal., Eur J Pain. 2012 Jan;16(1):72-81. doi: 10.1016/j.ejpain.2011.07.004.
3. Demireva EY, etal., Physiol Genomics. 2019 Jul 1;51(7):290-301. doi: 10.1152/physiolgenomics.00030.2019. Epub 2019 May 24.
4. Doly S, etal., J Comp Neurol. 2005 Sep 26;490(3):256-69.
5. Galici R, etal., Behav Pharmacol. 2008 Mar;19(2):153-9.
6. Gasbarri A, etal., Behav Brain Res. 2008 Dec 16;195(1):164-70. Epub 2008 Jan 9.
7. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Geurts FJ, etal., J Chem Neuroanat 2002 Jun;24(1):65-74.
9. GOA data from the GO Consortium
10. Graf M, etal., Neurosci Lett. 2004 Apr 8;359(1-2):45-8.
11. Harsing LG Jr, etal., Neurochem Res. 2004 Aug;29(8):1487-97.
12. Hedlund PB and Sutcliffe JG, Neurosci Lett. 2007 Mar 13;414(3):247-51. Epub 2007 Jan 11.
13. Heidmann DE, etal., J Neurochem 1997 Apr;68(4):1372-81.
14. Horiguchi M, etal., J Pharmacol Exp Ther. 2011 Aug;338(2):605-14. Epub 2011 May 10.
15. Lenglet S, etal., Endocrinology 2002 May;143(5):1748-60.
16. Leo D, etal., Genes Brain Behav. 2009 Apr;8(3):356-68. Epub 2009 Feb 19.
17. Liy-Salmeron G and Meneses A, Hippocampus. 2008;18(9):965-74.
18. Lovenberg TW, etal., Neuron 1993 Sep;11(3):449-58.
19. Matott MP and Kline DD, Brain Res. 2016 Mar 15;1635:12-26. doi: 10.1016/j.brainres.2016.01.017. Epub 2016 Jan 15.
20. MGD Curation, June 12, 2002
21. MGD data from the GO Consortium
22. Monti JM, etal., Behav Brain Res. 2008 Aug 22;191(2):184-9. Epub 2008 Mar 25.
23. NCBI rat LocusLink and RefSeq merged data July 26, 2002
24. Parga J, etal., Dev Neurobiol. 2007 Jan;67(1):10-22.
25. Pipeline to import KEGG annotations from KEGG into RGD
26. Pipeline to import SMPDB annotations from SMPDB into RGD
27. Pitra P, etal., Pharmacol Rep. 2007 Nov-Dec;59(6):627-35.
28. Read KE, etal., Br J Pharmacol. 2003 Sep;140(1):53-60. Epub 2003 Jul 29.
29. Rekik M, etal., Eur J Pharmacol. 2011 Jan 10;650(1):403-10. Epub 2010 Oct 20.
30. RGD automated data pipeline
31. RGD automated import pipeline for gene-chemical interactions
32. Rocha-Gonzalez HI, etal., Pain. 2005 Sep;117(1-2):182-92.
33. Ruat M, etal., Proc Natl Acad Sci U S A 1993 Sep 15;90(18):8547-51.
34. Seitz BM, etal., Physiol Genomics. 2019 Jul 1;51(7):302-310. doi: 10.1152/physiolgenomics.00031.2019. Epub 2019 May 24.
35. Shen Y, etal., J Biol Chem 1993 Aug 25;268(24):18200-4.
36. Tokarski K, etal., J Physiol Pharmacol. 2009 Jun;60(2):83-8.
37. Tokarski K, etal., J Physiol Pharmacol. 2011 Dec;62(6):663-7.
38. Wang X, etal., Headache. 2010 Apr;50(4):579-87. Epub 2010 Mar 5.
39. Wesolowska A, etal., Neuropharmacology. 2006 Sep;51(3):578-86. Epub 2006 Jul 7.
40. Witkin JM, etal., Epilepsy Res. 2007 Jun;75(1):39-45. Epub 2007 May 7.
41. Yelleswarapu NK, etal., Neurosci Lett. 2012 Mar 21.
42. Zlojutro M, etal., Am J Med Genet B Neuropsychiatr Genet. 2011 Jan;156B(1):44-58. doi: 10.1002/ajmg.b.31136. Epub 2010 Nov 2.
43. Zou BC, etal., Chin Med J (Engl). 2007 Dec 5;120(23):2069-74.
Additional References at PubMed
PMID:8517926   PMID:15707674   PMID:16759802   PMID:16901936   PMID:17543469   PMID:17853773   PMID:18996171   PMID:19302555   PMID:19447286   PMID:19629447   PMID:19805745   PMID:20071609  
PMID:21248402   PMID:21403818   PMID:21538661   PMID:22543085   PMID:22922122   PMID:23164613   PMID:23542440   PMID:23603557   PMID:23672716   PMID:23694713   PMID:23742863   PMID:24129596  
PMID:24162801   PMID:24603678   PMID:24709857   PMID:26470809   PMID:26773257   PMID:26979176   PMID:27178363   PMID:27393215   PMID:28987281   PMID:29384698   PMID:29730242   PMID:32329363  


Genomics

Comparative Map Data
Htr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21233,636,442 - 233,761,063 (-)NCBI
Rnor_6.0 Ensembl1254,547,620 - 254,671,778 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01254,547,964 - 254,671,811 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01261,759,122 - 261,879,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,136,279 - 240,260,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11240,308,574 - 240,434,503 (-)NCBI
Celera1230,737,463 - 230,859,847 (-)NCBICelera
Cytogenetic Map1q53NCBI
HTR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1090,740,823 - 90,858,039 (-)EnsemblGRCh38hg38GRCh38
GRCh381090,738,693 - 90,858,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371092,500,580 - 92,617,796 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361092,490,555 - 92,607,651 (-)NCBINCBI36hg18NCBI36
Build 341092,490,557 - 92,607,651NCBI
Celera1086,247,007 - 86,364,124 (-)NCBI
Cytogenetic Map10q23.31NCBI
HuRef1086,129,586 - 86,246,677 (-)NCBIHuRef
CHM1_11092,778,457 - 92,895,518 (-)NCBICHM1_1
Htr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391935,935,815 - 36,035,533 (-)NCBIGRCm39mm39
GRCm39 Ensembl1935,936,134 - 36,034,907 (-)Ensembl
GRCm381935,958,415 - 36,058,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1935,958,734 - 36,057,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv371936,033,217 - 36,131,850 (-)NCBIGRCm37mm9NCBIm37
MGSCv361936,025,416 - 36,122,486 (-)NCBImm8
Celera1936,736,456 - 36,835,310 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1930.3NCBI
Htr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554252,321,420 - 2,420,530 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554252,321,420 - 2,420,420 (+)NCBIChiLan1.0ChiLan1.0
HTR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11091,008,278 - 91,125,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1091,009,941 - 91,125,158 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01087,480,970 - 87,598,212 (-)NCBIMhudiblu_PPA_v0panPan3
HTR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,438,872 - 5,524,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl285,440,388 - 5,524,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha285,605,815 - 5,691,701 (-)NCBI
ROS_Cfam_1.0285,658,606 - 5,744,502 (-)NCBI
UMICH_Zoey_3.1285,415,879 - 5,501,608 (-)NCBI
UNSW_CanFamBas_1.0285,454,660 - 5,540,434 (-)NCBI
UU_Cfam_GSD_1.0285,588,358 - 5,595,285 (-)NCBI
Htr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721341,937,016 - 42,106,548 (+)NCBI
SpeTri2.0NW_0049366013,569,626 - 3,626,782 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14102,444,566 - 102,548,931 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114102,443,312 - 102,548,894 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214111,526,055 - 111,660,097 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HTR7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1984,081,713 - 84,191,112 (-)NCBI
ChlSab1.1 Ensembl984,083,396 - 84,190,876 (-)Ensembl
Htr7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247371,960,985 - 2,067,086 (-)NCBI

Position Markers
RH132467  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,600,468 - 254,600,652NCBIRnor6.0
Rnor_5.01261,812,236 - 261,812,420UniSTSRnor5.0
RGSC_v3.41240,187,535 - 240,187,719UniSTSRGSC3.4
Celera1230,788,543 - 230,788,727UniSTS
Cytogenetic Map1q53UniSTS
RH66814  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,558,311 - 254,558,450NCBIRnor6.0
Rnor_5.01261,769,469 - 261,769,608UniSTSRnor5.0
RGSC_v3.41240,145,378 - 240,145,517UniSTSRGSC3.4
Celera1230,746,558 - 230,746,697UniSTS
Cytogenetic Map1q53UniSTS
Htr7  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,670,943 - 254,671,483NCBIRnor6.0
Rnor_5.01261,879,084 - 261,879,624UniSTSRnor5.0
RGSC_v3.41240,259,967 - 240,260,507UniSTSRGSC3.4
Celera1230,859,194 - 230,859,734UniSTS
Cytogenetic Map1q53UniSTS
RH143843  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,548,030 - 254,548,148NCBIRnor6.0
Rnor_5.01261,759,188 - 261,759,306UniSTSRnor5.0
RGSC_v3.41240,135,095 - 240,135,213UniSTSRGSC3.4
Celera1230,736,279 - 230,736,397UniSTS
RH 3.4 Map11585.11UniSTS
Cytogenetic Map1q53UniSTS
UniSTS:495969  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,671,043 - 254,671,133NCBIRnor6.0
Rnor_5.01261,879,184 - 261,879,274UniSTSRnor5.0
RGSC_v3.41240,260,067 - 240,260,157UniSTSRGSC3.4
Celera1230,859,294 - 230,859,384UniSTS
Cytogenetic Map1q53UniSTS
Htr7  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01254,549,169 - 254,549,275NCBIRnor6.0
Rnor_5.01261,760,327 - 261,760,433UniSTSRnor5.0
RGSC_v3.41240,136,234 - 240,136,340UniSTSRGSC3.4
Celera1230,737,418 - 230,737,524UniSTS
Cytogenetic Map1q53UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292216Bw80Body weight QTL 803.230.0019body mass (VT:0001259)body weight (CMO:0000012)1233490105264802994Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1236795785281795785Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1245529606282763074Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1236265430281265430Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1215711860260711860Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1156446196274977688Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1236763415258766873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1161321152273792054Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1238830534278228767Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1233663100273792054Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1243272341282763074Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1244401175282365384Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1235850810280850810Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1244992467282365384Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1215828102260828102Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1216324817261324817Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1252955158280632620Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1167394665278228889Rat
1581544Rf52Renal function QTL 520.05total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1252948438281795785Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1241482188281795785Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1191825895279986079Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1215711860258765521Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1238824734279986079Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1221901238266901238Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1221901238266901238Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1221901238266901238Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1221901238266901238Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1244401175264636028Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1244401175264636028Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1244401175282365384Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1217054291281795785Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1193968438261264776Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1215828102260828102Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1225689973270689973Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1225689973270689973Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1195598053265002735Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1215684498260684498Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1244087148282763074Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1213476630278978026Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1213476630278978026Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1226706329271706329Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1161321256273791893Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1196395041282763074Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1161321256273791893Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1249206242281795785Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1192639698278228889Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1161784169278228889Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1192639698278228889Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1161784169278228889Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1236795785281795785Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1249607907266793958Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1163796316282763074Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1210360774264802828Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1174905700264802994Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1230420627282645769Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1208517798266948272Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1230420627262031693Rat
1358292Cm37Cardiac mass QTL 376.20.00000081heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1216324817261324817Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1236265430281265430Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1215828102260828102Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238830408266793958Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1202571665264802994Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1122614824262664716Rat
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1227509470255131140Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1125875758262433692Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1210652654255652654Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221901238266901238Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1244148899282763074Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1202571665264802994Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1242302911282763074Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1222492538267492538Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1210990171255990171Rat


Genetic Models
This gene Htr7 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:322
Count of miRNA genes:193
Interacting mature miRNAs:245
Transcripts:ENSRNOT00000025450, ENSRNOT00000025493
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5
Low 8 2 2 2 53 24 19
Below cutoff 20 35 28 19 28 1 1 27 7 14 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025450   ⟹   ENSRNOP00000025450
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1254,547,627 - 254,671,596 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000025493   ⟹   ENSRNOP00000025493
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1254,547,937 - 254,671,778 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078150   ⟹   ENSRNOP00000071410
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1254,547,620 - 254,671,588 (-)Ensembl
RefSeq Acc Id: NM_022938   ⟹   NP_075227
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21233,638,046 - 233,760,444 (-)NCBI
Rnor_6.01254,549,214 - 254,671,596 (-)NCBI
Rnor_5.01261,759,122 - 261,879,914 (-)NCBI
RGSC_v3.41240,136,279 - 240,260,620 (-)RGD
Celera1230,737,463 - 230,859,847 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231307   ⟹   XP_006231369
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21233,636,442 - 233,761,056 (-)NCBI
Rnor_6.01254,547,964 - 254,671,811 (-)NCBI
Rnor_5.01261,759,122 - 261,879,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589691   ⟹   XP_017445180
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01254,547,964 - 254,671,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089833   ⟹   XP_038945761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21233,636,442 - 233,680,229 (-)NCBI
RefSeq Acc Id: XM_039089840   ⟹   XP_038945768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21233,639,589 - 233,761,063 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_075227   ⟸   NM_022938
- UniProtKB: P32305 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231369   ⟸   XM_006231307
- Peptide Label: isoform X1
- UniProtKB: P32305 (UniProtKB/Swiss-Prot),   A0A0H2UHQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445180   ⟸   XM_017589691
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000071410   ⟸   ENSRNOT00000078150
RefSeq Acc Id: ENSRNOP00000025493   ⟸   ENSRNOT00000025493
RefSeq Acc Id: ENSRNOP00000025450   ⟸   ENSRNOT00000025450
RefSeq Acc Id: XP_038945761   ⟸   XM_039089833
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945768   ⟸   XM_039089840
- Peptide Label: isoform X3
Protein Domains
G_PROTEIN_RECEP_F1_2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71034 AgrOrtholog
Ensembl Genes ENSRNOG00000018827 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000055705 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025450 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000025493 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000071410 UniProtKB/TrEMBL
  ENSRNOP00000073500 UniProtKB/TrEMBL
  ENSRNOP00000074238 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025450 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000025493 UniProtKB/Swiss-Prot
  ENSRNOT00000078150 UniProtKB/TrEMBL
  ENSRNOT00000082732 UniProtKB/Swiss-Prot
  ENSRNOT00000089855 UniProtKB/TrEMBL
InterPro 5HT_7_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:103694905 UniProtKB/Swiss-Prot
  rno:65032 UniProtKB/Swiss-Prot
NCBI Gene 65032 ENTREZGENE
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Htr7 PhenoGen
PRINTS 5HT7RECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt 5HT7R_RAT UniProtKB/Swiss-Prot
  A0A0G2K0E3_RAT UniProtKB/TrEMBL
  A0A0G2K5P0_RAT UniProtKB/TrEMBL
  A0A0H2UHQ4 ENTREZGENE
  P32305 ENTREZGENE
  P97842_RAT UniProtKB/TrEMBL
UniProt Secondary P97936 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Htr7  5-hydroxytryptamine receptor 7  LOC103694905  5-hydroxytryptamine receptor 7  Data Merged 737654 PROVISIONAL
2016-02-11 Htr7  5-hydroxytryptamine receptor 7  Htr7  5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103694905  5-hydroxytryptamine receptor 7      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-06 Htr7  5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled  Htr7  5-hydroxytryptamine (serotonin) receptor 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Htr7  5-hydroxytryptamine (serotonin) receptor 7      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in Purkinje cells 727384
gene_process activation results in aldosterone secretion via the adenylyl cyclase/PKA pathway and the calcium influx 729310