Gene: Pdlim1 (PDZ and LIM domain 1) Rattus norvegicus
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Symbol: Pdlim1
Name: PDZ and LIM domain 1
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN response to hypoxia; regulation of transcription, DNA-templated (ortholog); FOUND IN transcription factor complex (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-terminal LIM domain protein 1; CLP36; elfin; LIM domain protein CLP-36; LIM protein; PDZ and LIM domain 1 (elfin); PDZ and LIM domain protein 1
Orthologs:
Homo sapiens (human) : PDLIM1 (PDZ and LIM domain 1)  HGNC  Alliance
Mus musculus (house mouse) : Pdlim1 (PDZ and LIM domain 1 (elfin))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pdlim1 (PDZ and LIM domain 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PDLIM1 (PDZ and LIM domain 1)
Canis lupus familiaris (dog) : PDLIM1 (PDZ and LIM domain 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pdlim1 (PDZ and LIM domain 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01259,308,326 - 259,357,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01266,752,410 - 266,800,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,350,086 - 245,399,534 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11245,446,644 - 245,496,093 (-)NCBI
Celera1234,889,852 - 234,937,718 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Pdlim1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 68324
Created: 2001-07-11
Species: Rattus norvegicus
Last Modified: 2018-08-14
Status: ACTIVE