D1Rat296 Marker Search Result - Rat Genome Database

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Marker: D1Rat296

Symbol: D1Rat296
Previously known as: oxsts10169; R0108-B05; 
RGD ID: 41048
Expected Size: 242 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,633,398 - 226,633,640 (+)Marker Load Pipeline
mRatBN7.21217,206,835 - 217,207,077 (+)MAPPERmRatBN7.2
Rnor_6.01237,187,160 - 237,187,401NCBIRnor6.0
Rnor_5.01244,487,143 - 244,487,384UniSTSRnor5.0
Celera1214,495,955 - 214,496,196UniSTS
SHRSP x BN Map1115.4RGD
SHRSP x BN Map1115.4UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CACCAACCACTTTTGCAGAA
Reverse Primer CCACTGGCACTTAGTCTTTGC
 
Template 
GCTGCAGGTCGACTCTAGAGGATCCCCTTTCTTCTTACTTCGTTTTAATTCATTTAGAAATAAA
AAGATAGAAGCTTTGTCTTCCCCTATGTGATAAAGATTGGAGTGCATTTTTCATCTAGAATGAG
TGAGTTCTTTCTCCACTGGCACTTAGTCTTTGCTCCATATACATATGTAAGTATGGATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTAAGCATTTGATTGTGAGATACA
ATGTTAGTAATACCCAACTATTTTGAATGGAAATGTATATGTATATATGCAGGAATTTGTATAT
GAATTTATGTGCGTTTAATCCATATTTGCTTGTGTAAAATTTTTCCTTCTGCAAAAGTGGTTGG
TGACTCTCTTCTCATGGTTCAATAGAAGTTAATGCTCCAACTCTTGCCCTAGCCTGACAAGTAT
GAGGCATCTGAGCAAGAAGGAAAAGACACTTACAATGAATCCTTTACTTCACCCCCTGCTGTTT
TACAATGAAGTGCTAATGCAAAGATGCAGTNCTGGCCTCAAGGGA
Strain, Expected Size(s)

ACI/N 248 AVN/Orl 248 BBDP/Rhw 248
BBDR/Rhw 244 BC/CpbU 244 BDIX/Han 244
BN-Lx/Cub 244 BN/SsNHsd 244 BP/Cub 244
BUF/Pit 244 COP/OlaHsd 248 DA/PitN 248
DON/Melb 244 F344/Pit 244 FHH/Eur 244
GH/Omr 252 GK/KyoSwe 248 IS/Kyo 248
LE/Mol 244 LH/Mav 248 LN/Mav 240
LOU/CHan 244 M520/N 248 MHS/Gib 240
MNR/N 248 MNRA/N 248 MNS/Gib 240
MR/Pit 240 NEDH/K 240 NP9 240
ODU/N 244 OKA/Wsl 244 OM/Ztm 240
P5C 240 PVG/Pit 242 SD/Rij 240
SHR/OlaHsd 248 SHRSP/Riv 244 SR/Jr 240
SS/Jr 240 WAG/RijKyo 240 WF/Pit 240
WIST/Nhg 240 WKY/OlaHsd 244 WN/N 244


GenBank Nucleotide CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat

1 to 10 of 84 rows