D1Rat303 Marker Search Result - Rat Genome Database

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Marker: D1Rat303

Symbol: D1Rat303
Previously known as: oxsts10176; R0244-D12; 
RGD ID: 41598
Expected Size: 123 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81242,805,172 - 242,805,295 (+)Marker Load Pipeline
mRatBN7.21233,392,538 - 233,392,661 (+)MAPPERmRatBN7.2
Rnor_6.01254,304,198 - 254,304,320NCBIRnor6.0
Rnor_5.01261,517,644 - 261,517,766UniSTSRnor5.0
RGSC_v3.41239,889,105 - 239,889,228RGDRGSC3.4
RGSC_v3.41239,889,106 - 239,889,228UniSTSRGSC3.4
RGSC_v3.11240,054,703 - 240,055,160RGD
Celera1230,494,130 - 230,494,252UniSTS
SHRSP x BN Map1128.82RGD
SHRSP x BN Map1128.82UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GATGAACAAACAGATAGATGCACA
Reverse Primer GTCTGTTTTCAGAAGGGGGC
 
Template 
GCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTTTTATTGACTGAACC
ATCTCTACAACTTTATAATTTTTAATAACTGCTCTTAAGAATATGGTTTTTTGAACCATGCAAG
TGTGAATGGTATAAAAAGTAAAAACGAAAACAAAAACAAAACAACAACAACAAAAAACAAACAC
AAGGCATTGTCCTAACTCTGAGCAACAGACTCATTAAATATTTAATTGTTTAAATTAAAAAATG
TAGAGCCTTTGATCAATAAAAATGTAGTGATTGTGTTTAATATATGATTATTTAGATTGTGATC
CTGTAGTCTGTTTTCAGAAGGGGGCCCAAAGATACAGTTATGAGAGAAAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTGCATCTATCTGTTTGTTCA
TCTACAAAATTTCTCTTTAGGATCATTCTTTTTTCTGTGTTAATCTGAAAATTTCAAGGGTACG
AGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCC
Strain, Expected Size(s)

ACI/N 127 AVN/Orl 125 BBDP/Rhw 125
BBDR/Rhw 125 BC/CpbU 125 BDIX/Han 127
BDVII/Cub 125 BN-Lx/Cub 125 BN/SsNHsd 125
BP/Cub 127 BUF/Pit 125 COP/OlaHsd 125
DA/PitN 127 DON/Melb 125 F344/Pit 125
FHH/Eur 125 GH/Omr 125 GK/KyoSwe 125
IS/Kyo 125 LE/Mol 125 LEW/Pit 125
LH/Mav 125 LN/Mav 125 LOU/CHan 125
M520/N 125 MHS/Gib 101 MNR/N 125
MNRA/N 125 MNS/Gib 101 MR/Pit 127
NEDH/K 125 NP9 125 ODU/N 127
OKA/Wsl 127 OM/Ztm 125 P5C 125
PVG/Pit 125 SD/Rij 119 SHR/OlaHsd 125
SHRSP/Riv 127 SR/Jr 125 SS/Jr 125
WAG/RijKyo 125 WF/Pit 125 WIST/Nhg 125
WKY/OlaHsd 127 WN/N 127 WTC/Kyo 127


GenBank Nucleotide AC103077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC130926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH613103.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 75 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat

1 to 10 of 75 rows