Stl8 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Stl8 (Serum triglyceride level QTL 8) Rattus norvegicus

Symbol: Stl8
Name: Serum triglyceride level QTL 8
RGD ID: 631215
Previously known as: Tgl4; Triglyceride level QTL 4
Trait: blood triglyceride amount   (VT:0002644)    
Measurement Type: serum triglyceride level   (CMO:0000360)    
LOD Score: 9.27
P Value: 1.0E-4
Variance: 13.6
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81234,540,191 - 270,518,180RGD_MAPPER_PIPELINE
mRatBN7.21225,126,575 - 260,522,016RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01245,529,606 - 282,763,074RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01252,776,360 - 290,094,216RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41230,963,695 - 267,910,886RGDRGSC3.4
RGSC_v3.11231,127,720 - 268,121,971RGD
Cross Type: backcross
Strains Crossed: BN OLETF 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8RatHypertriglyceridemia  IDA 70852 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8Ratincreased circulating triglyceride level  QTM 70852 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8Ratserum triglyceride level  IDA 70852 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8Ratfasting  IDA 70852 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8Ratserum triglyceride analysis  IDA 70852 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8RatBN  IEA 70852 RGD 
Stl8RatOLETF  IEA 70852 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl8Ratblood triglyceride amount  IDA 70852 RGD 


#
Reference Title
Reference Citation
1. Genetic determinants of plasma triglyceride levels in (OLETF x BN) x OLETF backcross rats. Okuno S, etal., Genomics 1999 Dec 15;62(3):350-5.


1 to 20 of 518 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
7700759LOC102555808uncharacterized LOC1025558081225114347225140414Rat
7566943LOC102555989uncharacterized LOC1025559891225289547225334401Rat
2325049Eif4e-ps2eukaryotic translation initiation factor 4E, pseudogene 21225371014225371531Rat
1307779Rfx3regulatory factor X31225449872225709622Rat
41377637LOC120100479U6atac minor spliceosomal RNA1225488774225488891Rat
41097335LOC120100391small nucleolar RNA SNORA511225495834225495966Rat
7517961Thoc3-ps1THO complex 3, pseudogene 11225665659225666454Rat
1589453Ppid-ps2peptidylprolyl isomerase D, pseudogene 21225740072225741290Rat
41401218Rnu6-613RNA, U6 small nuclear 6131225971183225971289Rat
1565505Glis3GLIS family zinc finger 31225976029226395849Rat
41142846LOC120098084uncharacterized LOC1200980841226451090226457544Rat
7715694LOC102546345uncharacterized LOC1025463451226521231226549807Rat
41277114Rnu6-525RNA, U6 small nuclear 5251226541765226541871Rat
3696Slc1a1solute carrier family 1 member 11226549932226631925Rat
1310039Spata6lspermatogenesis associated 6-like1226630470226682979Rat
1566000Plpp6phospholipid phosphatase 61226679100226681952Rat
1588239Phyh-ps1phytanoyl-CoA 2-hydroxylase, pseudogene 11226688444226689337Rat
1565057Tekt5l1tektin 5 like 11226689519226705125Rat
1309295Cdc37l1cell division cycle 37-like 11226705019226733994Rat
619885Ak3adenylate kinase 31226737472226764647Rat

1 to 20 of 518 rows
1 to 20 of 801 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10097D1Smu21291253050519253050648Ratregion
10105D1Smu11691255785337255785506Ratregion
10432D1Mgh243011245542075245542378Ratregion
10445D1Wox251821238755477238755659Ratregion
10446D1Mgh291061238755490238755596Ratregion
10805D1Mgh131381245907761245907899Ratregion
11148D1Mgh251961229550480229550676Ratregion
33830D1Mit321491244113147244113296Ratregion
33844D1Mit141041258625162258625266Ratregion
34009D1Mit341051225126575225126682Ratregion
34194D1Mgh141231256448513256448636Ratregion
34232D1Mgh151601254773191254773351Ratregion
34517D1Mgh321091241799011241799120Ratregion
33569D1Mit311791245480298245480477Ratregion
36083D1Rat1191731236036277236036450Ratregion
36169D1Rat891711257976324257976495Ratregion
36358D1Mit351231260274101260274224Ratregion
37506D1Rat1512401244863660244863900Ratregion
35266D1Rat791251240698709240698822Ratregion
35457D1Rat901621259647732259647894Ratregion
1 to 20 of 801 rows

Flank 1: (D1Mit34)
Rat AssemblyChrPosition (strand)Source
GRCr81234,540,191 - 234,540,296 (+)Marker Load Pipeline
mRatBN7.21225,126,575 - 225,126,682 (+)MAPPER
Rnor_6.01245,529,606 - 245,529,710NCBI
Rnor_5.01252,776,360 - 252,776,464UniSTS
RGSC_v3.41230,963,697 - 230,963,799RGD
RGSC_v3.41230,963,695 - 230,963,799UniSTS
RGSC_v3.11231,127,720 - 231,127,822RGD
Celera1222,301,636 - 222,301,740UniSTS
RH 3.4 Map11608.7UniSTS
RH 3.4 Map11608.7RGD
SHRSP x BN Map1125.45UniSTS
SHRSP x BN Map1125.45RGD
FHH x ACI Map1111.25RGD
Cytogenetic Map1 RGD
Peak: (D1Rat90)
Rat AssemblyChrPosition (strand)Source
GRCr81269,633,753 - 269,633,915 (+)Marker Load Pipeline
mRatBN7.21259,647,732 - 259,647,894 (+)MAPPER
Rnor_6.01281,795,624 - 281,795,785NCBI
Rnor_5.01289,137,107 - 289,137,268UniSTS
RGSC_v3.41267,110,921 - 267,111,153RGD
RGSC_v3.41267,110,926 - 267,111,087UniSTS
RGSC_v3.11267,322,011 - 267,322,172RGD
Celera1255,291,309 - 255,291,470UniSTS
RH 3.4 Map11708.8UniSTS
RH 3.4 Map11708.8RGD
RH 2.0 Map11313.1999RGD
SHRSP x BN Map1148.15RGD


1 to 10 of 95 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1207987464234238494Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1214537555238757011Rat

1 to 10 of 95 rows


Database
Acc Id
Source(s)
NCBI Gene Stl8


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Stl8  Serum triglyceride level QTL 8  Tgl4  Triglyceride level QTL 4  Symbol and Name updated 1299863 APPROVED

Note Type Note Reference
qtl_cross_type backcross