Cuedc2 (CUE domain containing 2) - Rat Genome Database

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Gene: Cuedc2 (CUE domain containing 2) Rattus norvegicus
Analyze
Symbol: Cuedc2
Name: CUE domain containing 2
RGD ID: 1308096
Description: Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within negative regulation of cytokine production involved in inflammatory response and negative regulation of macrophage cytokine production. Predicted to be located in cytosol; nuclear membrane; and nucleoplasm. Orthologous to human CUEDC2 (CUE domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CUE domain-containing protein 2; LOC294009; MGC156734
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21245,192,057 - 245,200,594 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,192,063 - 245,200,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,313,471 - 253,321,666 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01260,008,153 - 260,016,346 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01252,659,906 - 252,668,098 (-)NCBIRnor_WKY
Rnor_6.01266,078,107 - 266,087,057 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,078,108 - 266,086,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,509,048 - 273,517,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,546,666 - 251,554,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,809,748 - 251,818,045 (-)NCBI
Celera1240,974,831 - 240,983,023 (-)NCBICelera
Cytogenetic Map1q54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nuclear membrane  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:24882011   PMID:33494071  


Genomics

Comparative Map Data
Cuedc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21245,192,057 - 245,200,594 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,192,063 - 245,200,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,313,471 - 253,321,666 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01260,008,153 - 260,016,346 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01252,659,906 - 252,668,098 (-)NCBIRnor_WKY
Rnor_6.01266,078,107 - 266,087,057 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,078,108 - 266,086,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,509,048 - 273,517,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,546,666 - 251,554,858 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11251,809,748 - 251,818,045 (-)NCBI
Celera1240,974,831 - 240,983,023 (-)NCBICelera
Cytogenetic Map1q54NCBI
CUEDC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,423,249 - 102,432,574 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl10102,423,245 - 102,432,584 (-)EnsemblGRCh38hg38GRCh38
GRCh3710104,183,006 - 104,192,331 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,172,992 - 104,182,413 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410104,172,997 - 104,182,343NCBI
Celera1097,923,900 - 97,933,326 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1097,816,186 - 97,825,506 (-)NCBIHuRef
CHM1_110104,466,440 - 104,475,877 (-)NCBICHM1_1
T2T-CHM13v2.010103,308,213 - 103,317,546 (-)NCBIT2T-CHM13v2.0
Cuedc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,318,251 - 46,327,144 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,318,251 - 46,327,141 (-)EnsemblGRCm39 Ensembl
GRCm381946,329,812 - 46,338,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,329,812 - 46,338,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,404,302 - 46,413,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,383,855 - 46,391,935 (-)NCBIMGSCv36mm8
Celera1947,093,205 - 47,102,049 (-)NCBICelera
Cytogenetic Map19C3NCBI
Cuedc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,975,190 - 7,976,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,969,389 - 7,977,073 (+)NCBIChiLan1.0ChiLan1.0
CUEDC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110102,492,412 - 102,502,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,492,412 - 102,502,107 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01099,026,735 - 99,036,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CUEDC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,929,980 - 14,937,611 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,930,027 - 14,937,686 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,102,323 - 15,109,956 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,403,994 - 15,411,629 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,404,041 - 15,411,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12814,949,036 - 14,967,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02814,988,136 - 14,995,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,120,753 - 15,128,387 (-)NCBIUU_Cfam_GSD_1.0
Cuedc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,836,148 - 31,842,506 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366003,439,385 - 3,445,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUEDC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,434,465 - 113,464,028 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,434,458 - 113,443,643 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,267,612 - 123,269,611 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUEDC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,454,936 - 95,463,491 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl995,451,470 - 95,463,454 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604856,560,698 - 56,570,962 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cuedc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248311,826,744 - 1,828,822 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248311,826,744 - 1,833,945 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH140950  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,192,210 - 245,192,482 (+)MAPPERmRatBN7.2
Rnor_6.01266,078,261 - 266,078,532NCBIRnor6.0
Rnor_5.01273,509,202 - 273,509,473UniSTSRnor5.0
RGSC_v3.41251,546,820 - 251,547,091UniSTSRGSC3.4
Celera1240,974,985 - 240,975,256UniSTS
RH 3.4 Map11627.6UniSTS
Cytogenetic Map1q54UniSTS
AW434352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,191,816 - 245,191,955 (+)MAPPERmRatBN7.2
Rnor_6.01266,077,867 - 266,078,005NCBIRnor6.0
Rnor_5.01273,508,808 - 273,508,946UniSTSRnor5.0
RGSC_v3.41251,546,426 - 251,546,564UniSTSRGSC3.4
Celera1240,974,591 - 240,974,729UniSTS
RH 3.4 Map11623.9UniSTS
Cytogenetic Map1q54UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
1578778Pur4Proteinuria QTL 43.30.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1206081677251081677Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
1357404Bw42Body weight QTL 424.490.0001body mass (VT:0001259)body weight (CMO:0000012)1206329708251329708Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1213707201252085212Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1218748008257976495Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1218753689245907899Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1218753816256448513Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228985440245907899Rat
1581544Rf52Renal function QTL 520.05total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233190394258625266Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:76
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000026609
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 35 26 18 26 2 4 49 29 34 9 2
Low 14 22 15 1 15 6 7 25 6 7 2 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC096600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000026609   ⟹   ENSRNOP00000026609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,192,063 - 245,200,266 (-)Ensembl
Rnor_6.0 Ensembl1266,078,108 - 266,086,299 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097448   ⟹   ENSRNOP00000080530
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1245,192,063 - 245,200,339 (-)Ensembl
RefSeq Acc Id: NM_001079886   ⟹   NP_001073355
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,057 - 245,200,249 (-)NCBI
Rnor_6.01266,078,107 - 266,086,299 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
RGSC_v3.41251,546,666 - 251,554,858 (-)RGD
Celera1240,974,831 - 240,983,023 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231458   ⟹   XP_006231520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,429 (-)NCBI
Rnor_6.01266,078,110 - 266,086,430 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231460   ⟹   XP_006231522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,430 (-)NCBI
Rnor_6.01266,078,110 - 266,086,430 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231462   ⟹   XP_006231524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,373 (-)NCBI
Rnor_6.01266,078,110 - 266,086,493 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231465   ⟹   XP_006231527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,429 (-)NCBI
Rnor_6.01266,078,110 - 266,086,430 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231466   ⟹   XP_006231528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,430 (-)NCBI
Rnor_6.01266,078,110 - 266,086,430 (-)NCBI
Rnor_5.01273,509,048 - 273,517,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760409   ⟹   XP_008758631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,260 (-)NCBI
Rnor_6.01266,078,110 - 266,086,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760410   ⟹   XP_008758632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,594 (-)NCBI
Rnor_6.01266,078,110 - 266,087,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760411   ⟹   XP_008758633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,404 (-)NCBI
Rnor_6.01266,078,113 - 266,086,526 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589041   ⟹   XP_017444530
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,428 (-)NCBI
Rnor_6.01266,078,110 - 266,086,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109079   ⟹   XP_038965007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,260 (-)NCBI
RefSeq Acc Id: XM_039109080   ⟹   XP_038965008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,348 (-)NCBI
RefSeq Acc Id: XM_039109081   ⟹   XP_038965009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,197,177 (-)NCBI
RefSeq Acc Id: XM_039109082   ⟹   XP_038965010
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,199,723 (-)NCBI
RefSeq Acc Id: XM_039109083   ⟹   XP_038965011
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,197,319 (-)NCBI
RefSeq Acc Id: XM_039109084   ⟹   XP_038965012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,197,178 (-)NCBI
RefSeq Acc Id: XM_039109086   ⟹   XP_038965014
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21245,192,063 - 245,200,428 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001073355   ⟸   NM_001079886
- UniProtKB: A1L131 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231528   ⟸   XM_006231466
- Peptide Label: isoform X2
- UniProtKB: A1L131 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231522   ⟸   XM_006231460
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006231527   ⟸   XM_006231465
- Peptide Label: isoform X2
- UniProtKB: A1L131 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231520   ⟸   XM_006231458
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006231524   ⟸   XM_006231462
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008758632   ⟸   XM_008760410
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008758631   ⟸   XM_008760409
- Peptide Label: isoform X2
- UniProtKB: A1L131 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008758633   ⟸   XM_008760411
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017444530   ⟸   XM_017589041
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000026609   ⟸   ENSRNOT00000026609
RefSeq Acc Id: XP_038965014   ⟸   XM_039109086
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038965008   ⟸   XM_039109080
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965007   ⟸   XM_039109079
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965010   ⟸   XM_039109082
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965011   ⟸   XM_039109083
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965012   ⟸   XM_039109084
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965009   ⟸   XM_039109081
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000080530   ⟸   ENSRNOT00000097448
Protein Domains
CUE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L131-F1-model_v2 AlphaFold A1L131 1-267 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690962
Promoter ID:EPDNEW_R1487
Type:initiation region
Name:Cuedc2_1
Description:CUE domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01266,086,388 - 266,086,448EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 266078654 266078655 T C snv CDR, WAG/Rij (RGD), CDS, SHR/NHsd (RGD), SHRSP/Gcrc (RGD), BXH2/CubMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), MWF/Hsd (2019), COP/CrCrl (MCW & UW)
1 266086489 266086490 C A snv WKY/N (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 273509595 273509596 T C snv COP/CrCrl (MCW & UW), WAG/Rij (KNAW), SHR/NCrlPrin (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHR/NHsd (KNAW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 251547213 251547214 T C snv SHRSP/Gcrc (MDC), SHR/OlaIpcv (KNAW), COP/CrCrl (MCW & UW), WAG/Rij (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), SHR/OlaIpcv (ICL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308096 AgrOrtholog
BioCyc Gene G2FUF-55515 BioCyc
Ensembl Genes ENSRNOG00000019574 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026609 ENTREZGENE
  ENSRNOP00000026609.6 UniProtKB/TrEMBL
  ENSRNOP00000080530 ENTREZGENE
  ENSRNOP00000080530.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026609 ENTREZGENE
  ENSRNOT00000026609.7 UniProtKB/TrEMBL
  ENSRNOT00000097448 ENTREZGENE
  ENSRNOT00000097448.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7104051 IMAGE-MGC_LOAD
InterPro CUE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CUE_CUED2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CUEDC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:294009 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156734 IMAGE-MGC_LOAD
NCBI Gene 294009 ENTREZGENE
PANTHER PTHR12493 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cuedc2 PhenoGen
PROSITE CUE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZQ90_RAT UniProtKB/TrEMBL
  A0A8L2UK80_RAT UniProtKB/TrEMBL
  A1L131 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cuedc2  CUE domain containing 2   Cuedc2_predicted  CUE domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cuedc2_predicted  CUE domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED