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Gene: LOC108349828 (uncharacterized LOC108349828) Rattus norvegicus

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Symbol:

LOC108349828

Name:

uncharacterized LOC108349828

RGD ID:

11499189

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	267,239,220 - 267,244,772 (+)	NCBI		GRCr8
mRatBN7.2	1	257,234,383 - 257,241,269 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	1	279,121,539 - 279,127,159 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	1	252,917,298 - 252,922,918 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Variants in LOC108349828
41 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	199050459	259647894	Rat
1549910	Bw54	Body weight QTL 54		0.05	body mass (VT:0001259)	body weight (CMO:0000012)	1	214647894	259647894	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	214647894	259647894	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	222363780	260522016	Rat
631690	Scl5	Serum cholesterol level QTL 5	2.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	236125214	260522016	Rat
10053715	Scort24	Serum corticosterone level QTL 24	2.13	0.0088	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	221414816	260522016	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	216255568	260522016	Rat
1600392	Bw123	Body weight QTL 123		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	223201027	260522016	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	238699859	259647894	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	237147813	260522016	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	228581588	259647894	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	224054293	260122809	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	225126575	260522016	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	223262787	260522016	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	224054293	260122809	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	221264111	259647894	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	245907761	257976495	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	232156370	259647894	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	233948574	260522016	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	224569538	260122809	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
734768	Niddm59	Non-insulin dependent diabetes mellitus QTL 59			body mass (VT:0001259)	body weight (CMO:0000012)	1	213843987	258843987	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	216255568	260522016	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233190394	258625266	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	218748008	257976495	Rat
1358890	Bp259	Blood pressure QTL 259	3.06		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	210702053	260522016	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XR_001836361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001836565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001836361

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	267,239,220 - 267,244,772 (+)	NCBI
mRatBN7.2	1	257,234,383 - 257,241,269 (+)	NCBI
Rnor_6.0	1	279,121,539 - 279,127,159 (+)	NCBI

Sequence:

show sequence

TGTGTATATGTATACAATGTACTCACACAGGAAGGCATGTACACCACACACATGTACAACTCAAGTCAATGGACTACCAGATGTATCCTTTTGTGTCTGGTTCGTTTGCTCAACTCTGTGTCTTGTAA
GACTCACCCCCATCCTGTGAGGGATGGTTTTCTGTGTGTGCTGCTGTGTCATACAGAGGAGGGACCTAGTGGCAGTTCTCCATTGTATAGTTAATGGCCTCCTTGGTGCCTTTCCTCACCGTGATGCC
ATGGACATCCTTACCCTGGTCTCCTGGAAATATGAGTATACCTTTGAAGACAGAATTGTGAGGTATACCAGTTGGCTATAGTTCTGTCATAAGTGTTTTAAGAGAACTGCTCTGGCTTACTAAGTTGA
ATAATACAGGACTCACAGAAAGCCAGAGACAGAAGCGGATACAAGGATGCTGTGGCCCGCACATATGGACTCAAAGGAGAGGAAGAAGAAATCCTGTTGGGAGTTTGCACTGGCTTCTCTCTCCTTCC
TGGCCCAGTGTGATGTAGGCCGTTCTGCTCAGCCATGCCTTCTCTACGATGATGGGCCGAGATCTGAAAGAAATCCTTCTTTCCTTCTAATTGTCAGTTTTGGTGAATGTGAAGGGAGACGCTGGGAC
TGCCTATGACTGCGTAGCATCCCTGGATCACCAATTCTGCTACGCTCTGCCGGAGTCGTCATATGAATTCCCGTTTCCGCTGGCGATCCTGGCTCTGACTTCACAGTGCAAGTCACTTCATTGCTTTG
CTCGCTAACCATTCTAACTGGTGCGGGGTGGCATCTCACCTTGGTCACAGGGGCTAGGCATACAACCTGACAATGATCAAGCCACACGTGACACAAACTACCCTCCATCTCTGCATCCAGACTCTCTG
CAAGGGCCAGCTTCTACCTCCTAACAGTCAGAGCCAGAAAAAGTTAAACTCACACAACCGATTGGTACCATAAAGTGTGCCCTTGCCAACACCCTGCAGTTGGAGCACCCTGAAGCCTCCTTAGAGTT
TCTCTGTGAAATTTTCCACTCCTCAGTCTCTTCTGCAGCCCTGCTGAGCCTGAGGTTGGTGGCAGACAGAAGCCCTTGGTTATCTGCATCTGCACAAACAGGCCCTGCTTGCTCTCACTTGAGCACTT
ACTGTCCTTTTCCATGGAGTCATAATCTCCGAGCTTCACAGCCTCATGCCTGGATAGCACCTGGAATGCTGTGTGCTCTGGCATGATATTTGTTGACTGACTATAGGAACGCCTGCCCTTGTTTTGCT
CTTACCCTCAACTAACTTTTTTGGTTTGGTTTTTGTTTTTCAGTCTCAGGAACTGTCCAGGTGTGGAAGGAAGGCCCGAACCTCTGGGAAACCTCCGAGCTCCCAGTCAAACTACTTCCTTTCCAGTC
CAGTCCCAACTACCTCCTGGCTTCCTCACCTGTCTGAGCAGTCCATGCCTGCTCTGCATGGAGAGAGGCTTCAATGTCTTTGGAATGGCTCAGGGTATTCTGGGTAAAGTTCTAGTTCTTTCCAAGGG
AAAGACAAGAATGTAGTGTGGAGGAATGTAGCCCCCAGGTAGAAAGAGTACAGGCAACTGGTCAGCAGCCAGAACCTTTCTTGCAATTCGCAAGTGCCTTGGGGGAAGAATGGCTCAGTAAGACCAAA
TGTCTCTCTGTCCTCTATTGCTCTGGTCAGAAATATAGTTCAGGTTGTGCCTCTCCTGGGGGAAAGGATTTTTTGTGAAGGCTTTGTTAGAAGATGTCCTGCCTGCATCGTTGCTCATAGGCTTTCAA
AAGACCCTTCCAGAGCCAACGTTCAGAAAGTGAGCCCGGGCAAAAGCTCCTCAGACCTGGGAGGGCTTGGGACTCCAAGACTCCAAACTCTGGAAGATGGGCTTAGGGGTATGCAAGAGAAGTGAGCC
CGGATATGGCCTTTTACCCGATGAATCAAATACTAAGGAGACCATTGTGAACCAAAGTCTGCGTACCTGCACTTGGGCATGGGTCTTATGGGGGTCACTTCCTCACCTGAGGACGTGAGGTTTATTTT
CAGCCATGTCTGACGGTTGTTCAATCAGAAGTCACTCAGAACACCTCCTTAATGTCCTTGAGGATTTGAAAGTGACACTTTAAGCAGCTCTGACCCTTTGCAATATGATCAATTTGCCCTGTCCAGTG
TAAAATTGCCCAGTATTTGGTGCTACTGCTGCCTTCCCAAGTGTTGGATGATGCACACTGGGAGACCCTGATCAGTGGATCGTGGGCA

hide sequence

RefSeq Acc Id:

XR_005495227

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	267,239,220 - 267,244,772 (+)	NCBI
mRatBN7.2	1	257,234,383 - 257,241,269 (+)	NCBI

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-55277	BioCyc
NCBI Gene	LOC108349828	ENTREZGENE
PhenoGen	LOC108349828	PhenoGen
RNAcentral	URS0000CCF396	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-02	LOC108349828	uncharacterized LOC108349828			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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