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Gene: Shoc2 (SHOC2 leucine-rich repeat scaffold protein) Rattus norvegicus
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Symbol: Shoc2
Name: SHOC2 leucine-rich repeat scaffold protein
Description: Predicted to have protein phosphatase 1 binding activity. Predicted to be involved in positive regulation of Ras protein signal transduction. Predicted to localize to the cytosol; nucleoplasm; and protein phosphatase type 1 complex. Orthologous to human SHOC2 (SHOC2 leucine rich repeat scaffold protein); INTERACTS WITH bisphenol A; ketamine; rotenone.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: leucine-rich repeat protein SHOC-2; LOC309548; protein soc-2 homolog; protein sur-8 homolog; soc-2 (suppressor of clear) homolog; soc-2 (suppressor of clear) homolog (C. elegans); soc-2 suppressor of clear homolog; soc-2 suppressor of clear homolog (C. elegans)
Orthologs:
Homo sapiens (human) : SHOC2 (SHOC2 leucine rich repeat scaffold protein)  HGNC  Alliance
Mus musculus (house mouse) : Shoc2 (Shoc2, leucine rich repeat scaffold protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shoc2 (SHOC2 leucine rich repeat scaffold protein)
Pan paniscus (bonobo/pygmy chimpanzee) : SHOC2 (SHOC2 leucine rich repeat scaffold protein)
Canis lupus familiaris (dog) : SHOC2 (SHOC2 leucine rich repeat scaffold protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shoc2 (SHOC2 leucine rich repeat scaffold protein)
Sus scrofa (pig) : SHOC2 (SHOC2 leucine rich repeat scaffold protein)
more info ...
Is Marker For: Strains:   F344.GK-(D1Swe8-D1Gpam-1)/Swe  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly; Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01274,700,621 - 274,751,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1274,688,580 - 274,751,816 (+)Ensembl
Rnor_5.01282,112,968 - 282,163,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41260,255,253 - 260,273,170 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11260,429,356 - 260,484,216 (+)NCBI
Celera1248,709,991 - 248,759,976 (+)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Shoc2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308146
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.