D1Swe6 Marker Search Result - Rat Genome Database

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Marker: D1Swe6

Symbol: D1Swe6
Previously known as:
RGD ID: 1600314
Expected Size: 282 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21249,556,757 - 249,557,041 (+)MAPPERmRatBN7.2
Rnor_6.01270,435,354 - 270,435,635NCBIRnor6.0
Rnor_5.01277,874,526 - 277,874,807UniSTSRnor5.0
RGSC_v3.41256,242,053 - 256,242,334UniSTSRGSC3.4
Celera1245,295,908 - 245,296,189UniSTS
Cytogenetic Map1q55UniSTS
Is Marker For: Genes:   Sorcs1  


Annotation


#
Reference Title
Reference Citation
1. High-resolution quantitative trait locus analysis reveals multiple diabetes susceptibility loci mapped to intervals<800 kb in the species-conserved Niddm1i of the GK rat. Granhall C, etal., Genetics. 2006 Nov;174(3):1565-72. Epub 2006 Sep 1.
2. UniSTS Pipeline RGD automated pipelines


 
Forward Primer ACACAGATACTGCCCAGGTTG
Reverse Primer CATAGGTGCTACTTGCCTGCT
 
Strain, Expected Size(s)

F344/NCrl 284,274 GK/KyoSwe 284,274


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1305910Sorcs1sortilin-related VPS10 domain containing receptor 11249080662249594520Rat
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1357399Bw45Body weight QTL 453.05body mass (VT:0001259)body mass index (BMI) (CMO:0000105)1206329708251329708Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat

1 to 10 of 46 rows


Database
Acc Id
Source(s)
NCBI Gene 309533 UniSTS